Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G56310 |
| fragaria_vesca | FvH4_3g46060 FvH4_3g46060 FvH4_3g46060 |
| malus_domestica | MD03G1001200.v1.1 |
| prunus_persica | Prupe.6G000700_v2.0.a1 |
| rosa_laevigata | RLG00000037084 |
| rosa_multiflora | Rmu_co8446957.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00000530 |
| rosa_rugosa | Rorug05G0489400 |
| rosa_samantha | Rh5AG541900 Rh5BG567500 Rh5CG589300 Rh5DG575700 |
| rosa_wichuraiana | Rw5G050410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 388 |
| AccBSI | CCGCTC | 1 cut(s) | 9 |
| AccI | GTMKAC | 1 cut(s) | 621 |
| AccII | CGCG | 2 cut(s) | 1220, 1222 |
| AccIII | TCCGGA | 1 cut(s) | 741 |
| AclWI | GGATC | 2 cut(s) | 835, 848 |
| AcoI | YGGCCR | 1 cut(s) | 229 |
| AcsI | RAATTY | 3 cut(s) | 866, 1529, 1649 |
| AcyI | GRCGYC | 2 cut(s) | 389, 519 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 60, 139, 724, 816, 817, 832, 1170 |
| AflIII | ACRYGT | 1 cut(s) | 906 |
| AjnI | CCWGG | 2 cut(s) | 168, 1489 |
| AleI | CACNNNNGTG | 1 cut(s) | 1475 |
| AluBI | AGCT | 9 cut(s) | 19, 107, 542, 754, 877, 1286, 1336, 1609, 1642 |
| AluI | AGCT | 9 cut(s) | 19, 107, 542, 754, 877, 1286, 1336, 1609, 1642 |
| Alw21I | GWGCWC | 4 cut(s) | 21, 83, 369, 1194 |
| Alw26I | GTCTC | 3 cut(s) | 67, 1022, 1536 |
| Alw44I | GTGCAC | 1 cut(s) | 1190 |
| AlwI | GGATC | 2 cut(s) | 835, 848 |
| Aor13HI | TCCGGA | 1 cut(s) | 741 |
| AoxI | GGCC | 7 cut(s) | 130, 171, 229, 267, 372, 726, 1135 |
| ApaLI | GTGCAC | 1 cut(s) | 1190 |
| ApeKI | GCWGC | 6 cut(s) | 542, 545, 751, 1200, 1283, 1642 |
| ApoI | RAATTY | 3 cut(s) | 866, 1529, 1649 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1498 |
| AspA2I | CCTAGG | 1 cut(s) | 656 |
| AspLEI | GCGC | 4 cut(s) | 339, 391, 419, 1222 |
| AspS9I | GGNCC | 1 cut(s) | 712 |
| AsuHPI | GGTGA | 2 cut(s) | 208, 626 |
| AsuII | TTCGAA | 1 cut(s) | 642 |
| AvaII | GGWCC | 1 cut(s) | 712 |
| AvrII | CCTAGG | 1 cut(s) | 656 |
| BaeGI | GKGCMC | 2 cut(s) | 811, 1194 |
| BalI | TGGCCA | 1 cut(s) | 231 |
| BamHI | GGATCC | 1 cut(s) | 840 |
| BanI | GGYRCC | 1 cut(s) | 388 |
| BanII | GRGCYC | 3 cut(s) | 21, 823, 1377 |
| BauI | CACGAG | 1 cut(s) | 722 |
| BbsI | GAAGAC | 3 cut(s) | 205, 730, 1490 |
| Bbv12I | GWGCWC | 4 cut(s) | 21, 83, 369, 1194 |
| BbvCI | CCTCAGC | 2 cut(s) | 59, 65 |
| BbvI | GCAGC | 6 cut(s) | 529, 532, 763, 1187, 1295, 1629 |
| BccI | CCATC | 4 cut(s) | 266, 308, 737, 1103 |
| BceAI | ACGGC | 1 cut(s) | 359 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 893, 927 |
| BciT130I | CCWGG | 2 cut(s) | 170, 1491 |
| BcoDI | GTCTC | 3 cut(s) | 67, 1022, 1536 |
| BfaI | CTAG | 3 cut(s) | 657, 1370, 1566 |
| BfoI | RGCGCY | 1 cut(s) | 392 |
| BglII | AGATCT | 1 cut(s) | 1210 |
| BisI | GCNGC | 9 cut(s) | 330, 543, 546, 752, 792, 1201, 1284, 1308, 1643 |
| BlnI | CCTAGG | 1 cut(s) | 656 |
| BlsI | GCNGC | 9 cut(s) | 331, 544, 547, 753, 793, 1202, 1285, 1309, 1644 |
| Bme1390I | CCNGG | 2 cut(s) | 170, 1491 |
| Bme18I | GGWCC | 1 cut(s) | 712 |
| BmgT120I | GGNCC | 1 cut(s) | 712 |
| BmiI | GGNNCC | 2 cut(s) | 390, 842 |
| BmrFI | CCNGG | 2 cut(s) | 170, 1491 |
| BmsI | GCATC | 4 cut(s) | 451, 1161, 1254, 1318 |
| BpiI | GAAGAC | 3 cut(s) | 205, 730, 1490 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 35 |
| BpmI | CTGGAG | 1 cut(s) | 1473 |
| Bpu10I | CCTNAGC | 4 cut(s) | 59, 65, 705, 1451 |
| Bpu14I | TTCGAA | 1 cut(s) | 642 |
| BpuEI | CTTGAG | 3 cut(s) | 353, 381, 776 |
| BsaHI | GRCGYC | 2 cut(s) | 389, 519 |
| BsaI | GGTCTC | 1 cut(s) | 1022 |
| BsaJI | CCNNGG | 4 cut(s) | 226, 270, 656, 1114 |
| BsaWI | WCCGGW | 1 cut(s) | 741 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 35, 65, 335, 365 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 60, 139, 724, 816, 817, 832, 1170 |
| Bse118I | RCCGGY | 1 cut(s) | 1226 |
| Bse1I | ACTGG | 2 cut(s) | 414, 1008 |
| Bse3DI | GCAATG | 3 cut(s) | 594, 1089, 1533 |
| BseAI | TCCGGA | 1 cut(s) | 741 |
| BseBI | CCWGG | 2 cut(s) | 170, 1491 |
| BseDI | CCNNGG | 4 cut(s) | 226, 270, 656, 1114 |
| BseGI | GGATG | 8 cut(s) | 28, 165, 466, 512, 574, 1095, 1333, 1441 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 60, 139, 724, 816, 817, 832, 1170 |
| BseMI | GCAATG | 3 cut(s) | 594, 1089, 1533 |
| BseMII | CTCAG | 5 cut(s) | 50, 56, 62, 207, 719 |
| BseNI | ACTGG | 2 cut(s) | 414, 1008 |
| BseRI | GAGGAG | 2 cut(s) | 19, 27 |
| BseSI | GKGCMC | 2 cut(s) | 811, 1194 |
| BseXI | GCAGC | 6 cut(s) | 529, 532, 763, 1187, 1295, 1629 |
| Bsh1236I | CGCG | 2 cut(s) | 1220, 1222 |
| BshFI | GGCC | 7 cut(s) | 132, 173, 231, 269, 374, 728, 1137 |
| BshNI | GGYRCC | 1 cut(s) | 388 |
| BsiHKAI | GWGCWC | 4 cut(s) | 21, 83, 369, 1194 |
| BsiSI | CCGG | 4 cut(s) | 126, 696, 742, 1227 |
| BslFI | GGGAC | 1 cut(s) | 1481 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 60, 139, 724, 816, 817, 832, 1170 |
| BsmAI | GTCTC | 3 cut(s) | 67, 1022, 1536 |
| BsmFI | GGGAC | 1 cut(s) | 1481 |
| BsmI | GAATGC | 2 cut(s) | 753, 1565 |
| BsnI | GGCC | 7 cut(s) | 132, 173, 231, 269, 374, 728, 1137 |
| Bso31I | GGTCTC | 1 cut(s) | 1022 |
| Bsp119I | TTCGAA | 1 cut(s) | 642 |
| Bsp1286I | GDGCHC | 7 cut(s) | 21, 83, 369, 811, 823, 1194, 1377 |
| Bsp13I | TCCGGA | 1 cut(s) | 741 |
| Bsp143I | GATC | 2 cut(s) | 840, 1210 |
| Bsp19I | CCATGG | 2 cut(s) | 226, 1114 |
| BspANI | GGCC | 7 cut(s) | 132, 173, 231, 269, 374, 728, 1137 |
| BspCNI | CTCAG | 5 cut(s) | 51, 57, 63, 206, 718 |
| BspEI | TCCGGA | 1 cut(s) | 741 |
| BspFNI | CGCG | 2 cut(s) | 1220, 1222 |
| BspHI | TCATGA | 1 cut(s) | 1525 |
| BspLI | GGNNCC | 2 cut(s) | 390, 842 |
| BspPI | GGATC | 2 cut(s) | 835, 848 |
| BspQI | GCTCTTC | 1 cut(s) | 184 |
| BspT104I | TTCGAA | 1 cut(s) | 642 |
| BspT107I | GGYRCC | 1 cut(s) | 388 |
| BspTNI | GGTCTC | 1 cut(s) | 1022 |
| BsrBI | CCGCTC | 1 cut(s) | 9 |
| BsrDI | GCAATG | 3 cut(s) | 594, 1089, 1533 |
| BsrFI | RCCGGY | 1 cut(s) | 1226 |
| BsrI | ACTGG | 2 cut(s) | 414, 1008 |
| BssAI | RCCGGY | 1 cut(s) | 1226 |
| BssECI | CCNNGG | 4 cut(s) | 226, 270, 656, 1114 |
| BssMI | GATC | 2 cut(s) | 840, 1210 |
| BssNI | GRCGYC | 2 cut(s) | 389, 519 |
| BssSI | CACGAG | 1 cut(s) | 722 |
| BssT1I | CCWWGG | 4 cut(s) | 226, 270, 656, 1114 |
| Bst2BI | CACGAG | 1 cut(s) | 722 |
| Bst2UI | CCWGG | 2 cut(s) | 170, 1491 |
| Bst4CI | ACNGT | 5 cut(s) | 78, 431, 531, 736, 973 |
| Bst6I | CTCTTC | 3 cut(s) | 184, 1018, 1305 |
| BstACI | GRCGYC | 2 cut(s) | 389, 519 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 593, 602, 800 |
| BstBI | TTCGAA | 1 cut(s) | 642 |
| BstC8I | GCNNGC | 9 cut(s) | 105, 175, 233, 466, 523, 631, 1224, 1448, 1611 |
| BstDEI | CTNAG | 6 cut(s) | 59, 65, 71, 193, 705, 1451 |
| BstDSI | CCRYGG | 2 cut(s) | 226, 1114 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 58, 137 |
| BstF5I | GGATG | 8 cut(s) | 28, 165, 466, 512, 574, 1095, 1333, 1441 |
| BstFNI | CGCG | 2 cut(s) | 1220, 1222 |
| BstH2I | RGCGCY | 1 cut(s) | 392 |
| BstHHI | GCGC | 4 cut(s) | 339, 391, 419, 1222 |
| BstKTI | GATC | 2 cut(s) | 843, 1213 |
| BstMAI | GTCTC | 3 cut(s) | 67, 1022, 1536 |
| BstMBI | GATC | 2 cut(s) | 840, 1210 |
| BstNI | CCWGG | 2 cut(s) | 170, 1491 |
| BstNSI | RCATGY | 3 cut(s) | 910, 1349, 1450 |
| BstSCI | CCNGG | 2 cut(s) | 168, 1489 |
| BstSLI | GKGCMC | 2 cut(s) | 811, 1194 |
| BstUI | CGCG | 2 cut(s) | 1220, 1222 |
| BstV1I | GCAGC | 6 cut(s) | 529, 532, 763, 1187, 1295, 1629 |
| BstV2I | GAAGAC | 3 cut(s) | 205, 730, 1490 |
| BstX2I | RGATCY | 2 cut(s) | 840, 1210 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1385 |
| BstYI | RGATCY | 2 cut(s) | 840, 1210 |
| BsuRI | GGCC | 7 cut(s) | 132, 173, 231, 269, 374, 728, 1137 |
| BtgI | CCRYGG | 2 cut(s) | 226, 1114 |
| BtsCI | GGATG | 8 cut(s) | 28, 165, 466, 512, 574, 1095, 1333, 1441 |
| BtsI | GCAGTG | 1 cut(s) | 474 |
| BtsIMutI | CAGTG | 4 cut(s) | 83, 427, 474, 527 |
| Cac8I | GCNNGC | 9 cut(s) | 105, 175, 233, 466, 523, 631, 1224, 1448, 1611 |
| CciI | TCATGA | 1 cut(s) | 1525 |
| CfoI | GCGC | 4 cut(s) | 339, 391, 419, 1222 |
| Cfr10I | RCCGGY | 1 cut(s) | 1226 |
| Cfr13I | GGNCC | 1 cut(s) | 712 |
| CseI | GACGC | 2 cut(s) | 457, 527 |
| DdeI | CTNAG | 6 cut(s) | 59, 65, 71, 193, 705, 1451 |
| DinI | GGCGCC | 1 cut(s) | 390 |
| DpnI | GATC | 2 cut(s) | 842, 1212 |
| DpnII | GATC | 2 cut(s) | 840, 1210 |
| EaeI | YGGCCR | 1 cut(s) | 229 |
| Eam1104I | CTCTTC | 3 cut(s) | 184, 1018, 1305 |
| EarI | CTCTTC | 3 cut(s) | 184, 1018, 1305 |
| EciI | GGCGGA | 1 cut(s) | 56 |
| Ecl136II | GAGCTC | 1 cut(s) | 19 |
| Eco130I | CCWWGG | 4 cut(s) | 226, 270, 656, 1114 |
| Eco147I | AGGCCT | 2 cut(s) | 132, 173 |
| Eco24I | GRGCYC | 3 cut(s) | 21, 823, 1377 |
| Eco31I | GGTCTC | 1 cut(s) | 1022 |
| Eco32I | GATATC | 2 cut(s) | 780, 1081 |
| Eco47I | GGWCC | 1 cut(s) | 712 |
| Eco53kI | GAGCTC | 1 cut(s) | 19 |
| EcoICRI | GAGCTC | 1 cut(s) | 19 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 58, 137 |
| EcoRI | GAATTC | 1 cut(s) | 1529 |
| EcoRII | CCWGG | 2 cut(s) | 168, 1489 |
| EcoRV | GATATC | 2 cut(s) | 780, 1081 |
| EcoT14I | CCWWGG | 4 cut(s) | 226, 270, 656, 1114 |
| EcoT38I | GRGCYC | 3 cut(s) | 21, 823, 1377 |
| EgeI | GGCGCC | 1 cut(s) | 390 |
| EheI | GGCGCC | 1 cut(s) | 390 |
| ErhI | CCWWGG | 4 cut(s) | 226, 270, 656, 1114 |
| FaqI | GGGAC | 1 cut(s) | 1481 |
| FauI | CCCGC | 3 cut(s) | 227, 530, 638 |
| FauNDI | CATATG | 1 cut(s) | 489 |
| FblI | GTMKAC | 1 cut(s) | 621 |
| Fnu4HI | GCNGC | 9 cut(s) | 330, 543, 546, 752, 792, 1201, 1284, 1308, 1643 |
| FokI | GGATG | 8 cut(s) | 15, 152, 473, 519, 581, 1082, 1340, 1448 |
| FriOI | GRGCYC | 3 cut(s) | 21, 823, 1377 |
| Fsp4HI | GCNGC | 9 cut(s) | 330, 543, 546, 752, 792, 1201, 1284, 1308, 1643 |
| FspBI | CTAG | 3 cut(s) | 657, 1370, 1566 |
| GlaI | GCGC | 4 cut(s) | 338, 390, 418, 1221 |
| GluI | GCNGC | 9 cut(s) | 330, 543, 546, 752, 792, 1201, 1284, 1308, 1643 |
| GsuI | CTGGAG | 1 cut(s) | 1473 |
| HaeII | RGCGCY | 1 cut(s) | 392 |
| HaeIII | GGCC | 7 cut(s) | 132, 173, 231, 269, 374, 728, 1137 |
| HapII | CCGG | 4 cut(s) | 126, 696, 742, 1227 |
| HgaI | GACGC | 2 cut(s) | 457, 527 |
| HhaI | GCGC | 4 cut(s) | 339, 391, 419, 1222 |
| Hin1I | GRCGYC | 2 cut(s) | 389, 519 |
| Hin6I | GCGC | 4 cut(s) | 337, 389, 417, 1220 |
| HinP1I | GCGC | 4 cut(s) | 337, 389, 417, 1220 |
| HincII | GTYRAC | 1 cut(s) | 622 |
| HindII | GTYRAC | 1 cut(s) | 622 |
| HinfI | GANTC | 5 cut(s) | 162, 318, 424, 1439, 1486 |
| HpaII | CCGG | 4 cut(s) | 126, 696, 742, 1227 |
| HphI | GGTGA | 2 cut(s) | 208, 626 |
| Hpy166II | GTNNAC | 3 cut(s) | 622, 712, 1192 |
| Hpy188I | TCNGA | 3 cut(s) | 196, 517, 1022 |
| Hpy188III | TCNNGA | 5 cut(s) | 140, 580, 742, 1238, 1526 |
| Hpy8I | GTNNAC | 3 cut(s) | 622, 712, 1192 |
| Hpy99I | CGWCG | 2 cut(s) | 380, 521 |
| HpyAV | CCTTC | 5 cut(s) | 143, 164, 364, 950, 1488 |
| HpyCH4III | ACNGT | 5 cut(s) | 78, 431, 531, 736, 973 |
| HpyF3I | CTNAG | 6 cut(s) | 59, 65, 71, 193, 705, 1451 |
| Hsp92I | GRCGYC | 2 cut(s) | 389, 519 |
| HspAI | GCGC | 4 cut(s) | 337, 389, 417, 1220 |
| KasI | GGCGCC | 1 cut(s) | 388 |
| Kpn2I | TCCGGA | 1 cut(s) | 741 |
| Kzo9I | GATC | 2 cut(s) | 840, 1210 |
| LguI | GCTCTTC | 1 cut(s) | 184 |
| LmnI | GCTCC | 6 cut(s) | 6, 24, 86, 539, 1333, 1639 |
| Lsp1109I | GCAGC | 6 cut(s) | 529, 532, 763, 1187, 1295, 1629 |
| LweI | GCATC | 4 cut(s) | 451, 1161, 1254, 1318 |
| MaeI | CTAG | 3 cut(s) | 657, 1370, 1566 |
| MaeIII | GTNAC | 1 cut(s) | 976 |
| MalI | GATC | 2 cut(s) | 842, 1212 |
| MbiI | CCGCTC | 1 cut(s) | 9 |
| MboI | GATC | 2 cut(s) | 840, 1210 |
| MboII | GAAGA | 8 cut(s) | 171, 205, 730, 1035, 1226, 1292, 1492, 1495 |
| MflI | RGATCY | 2 cut(s) | 840, 1210 |
| MhlI | GDGCHC | 7 cut(s) | 21, 83, 369, 811, 823, 1194, 1377 |
| MlsI | TGGCCA | 1 cut(s) | 231 |
| MluCI | AATT | 7 cut(s) | 444, 866, 1185, 1250, 1390, 1529, 1649 |
| MluNI | TGGCCA | 1 cut(s) | 231 |
| Mly113I | GGCGCC | 1 cut(s) | 389 |
| MlyI | GAGTC | 2 cut(s) | 156, 1480 |
| MmeI | TCCRAC | 3 cut(s) | 108, 346, 540 |
| Mox20I | TGGCCA | 1 cut(s) | 231 |
| MroI | TCCGGA | 1 cut(s) | 741 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1498 |
| MscI | TGGCCA | 1 cut(s) | 231 |
| MseI | TTAA | 2 cut(s) | 1062, 1176 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1326, 1383, 1475, 1508 |
| Msp20I | TGGCCA | 1 cut(s) | 231 |
| MspI | CCGG | 4 cut(s) | 126, 696, 742, 1227 |
| MspR9I | CCNGG | 2 cut(s) | 170, 1491 |
| Mva1269I | GAATGC | 2 cut(s) | 753, 1565 |
| MvaI | CCWGG | 2 cut(s) | 170, 1491 |
| MvnI | CGCG | 2 cut(s) | 1220, 1222 |
| NarI | GGCGCC | 1 cut(s) | 389 |
| NcoI | CCATGG | 2 cut(s) | 226, 1114 |
| NdeI | CATATG | 1 cut(s) | 489 |
| NdeII | GATC | 2 cut(s) | 840, 1210 |
| NlaIV | GGNNCC | 2 cut(s) | 390, 842 |
| NspI | RCATGY | 3 cut(s) | 910, 1349, 1450 |
| NspV | TTCGAA | 1 cut(s) | 642 |
| OliI | CACNNNNGTG | 1 cut(s) | 1475 |
| PaeI | GCATGC | 1 cut(s) | 1450 |
| PagI | TCATGA | 1 cut(s) | 1525 |
| PceI | AGGCCT | 2 cut(s) | 132, 173 |
| PciI | ACATGT | 1 cut(s) | 906 |
| PciSI | GCTCTTC | 1 cut(s) | 184 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 207, 900 |
| PctI | GAATGC | 2 cut(s) | 753, 1565 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1498 |
| PfeI | GAWTC | 3 cut(s) | 318, 424, 1439 |
| PfoI | TCCNGGA | 1 cut(s) | 1489 |
| PkrI | GCNGC | 9 cut(s) | 331, 544, 547, 753, 793, 1202, 1285, 1309, 1644 |
| PleI | GAGTC | 2 cut(s) | 156, 1480 |
| PluTI | GGCGCC | 1 cut(s) | 392 |
| PpsI | GAGTC | 2 cut(s) | 156, 1480 |
| PscI | ACATGT | 1 cut(s) | 906 |
| Psp124BI | GAGCTC | 1 cut(s) | 21 |
| Psp6I | CCWGG | 2 cut(s) | 168, 1489 |
| PspGI | CCWGG | 2 cut(s) | 168, 1489 |
| PspN4I | GGNNCC | 2 cut(s) | 390, 842 |
| PspPI | GGNCC | 1 cut(s) | 712 |
| PsuI | RGATCY | 2 cut(s) | 840, 1210 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1326, 1383, 1475, 1508 |
| SacI | GAGCTC | 1 cut(s) | 21 |
| SalI | GTCGAC | 1 cut(s) | 620 |
| SapI | GCTCTTC | 1 cut(s) | 184 |
| SaqAI | TTAA | 2 cut(s) | 1062, 1176 |
| SatI | GCNGC | 9 cut(s) | 330, 543, 546, 752, 792, 1201, 1284, 1308, 1643 |
| Sau3AI | GATC | 2 cut(s) | 840, 1210 |
| Sau96I | GGNCC | 1 cut(s) | 712 |
| SchI | GAGTC | 2 cut(s) | 156, 1480 |
| ScrFI | CCNGG | 2 cut(s) | 170, 1491 |
| SduI | GDGCHC | 7 cut(s) | 21, 83, 369, 811, 823, 1194, 1377 |
| SfaNI | GCATC | 4 cut(s) | 451, 1161, 1254, 1318 |
| SfoI | GGCGCC | 1 cut(s) | 390 |
| SfuI | TTCGAA | 1 cut(s) | 642 |
| SinI | GGWCC | 1 cut(s) | 712 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1326, 1383, 1475, 1508 |
| SmlI | CTYRAG | 3 cut(s) | 368, 396, 755 |
| SmoI | CTYRAG | 3 cut(s) | 368, 396, 755 |
| SphI | GCATGC | 1 cut(s) | 1450 |
| Sse9I | AATT | 7 cut(s) | 444, 866, 1185, 1250, 1390, 1529, 1649 |
| SseBI | AGGCCT | 2 cut(s) | 132, 173 |
| SspDI | GGCGCC | 1 cut(s) | 388 |
| SspI | AATATT | 1 cut(s) | 1318 |
| SspMI | CTAG | 3 cut(s) | 657, 1370, 1566 |
| SstI | GAGCTC | 1 cut(s) | 21 |
| StuI | AGGCCT | 2 cut(s) | 132, 173 |
| StyD4I | CCNGG | 2 cut(s) | 168, 1489 |
| StyI | CCWWGG | 4 cut(s) | 226, 270, 656, 1114 |
| TaaI | ACNGT | 5 cut(s) | 78, 431, 531, 736, 973 |
| TaqI | TCGA | 5 cut(s) | 148, 621, 642, 903, 1120 |
| TasI | AATT | 7 cut(s) | 444, 866, 1185, 1250, 1390, 1529, 1649 |
| TauI | GCSGC | 3 cut(s) | 332, 794, 1310 |
| TfiI | GAWTC | 3 cut(s) | 318, 424, 1439 |
| Tru1I | TTAA | 2 cut(s) | 1062, 1176 |
| Tru9I | TTAA | 2 cut(s) | 1062, 1176 |
| TscAI | CASTG | 4 cut(s) | 83, 434, 481, 534 |
| TseI | GCWGC | 6 cut(s) | 542, 545, 751, 1200, 1283, 1642 |
| TspGWI | ACGGA | 2 cut(s) | 199, 552 |
| TspRI | CASTG | 4 cut(s) | 83, 434, 481, 534 |
| VneI | GTGCAC | 1 cut(s) | 1190 |
| VpaK11BI | GGWCC | 1 cut(s) | 712 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 58, 137 |
| XapI | RAATTY | 3 cut(s) | 866, 1529, 1649 |
| XceI | RCATGY | 3 cut(s) | 910, 1349, 1450 |
| XmaJI | CCTAGG | 1 cut(s) | 656 |
| XmiI | GTMKAC | 1 cut(s) | 621 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1498 |
| XspI | CTAG | 3 cut(s) | 657, 1370, 1566 |