Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020865

Physical Location & Seq

Genomic Coordinates Reverse (-)

23365805 .. 23367063

Gene Structure 1259 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57685.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAAGGAAGACAATATTACCCTCCGAGAGAAAACGTTGAAGGAAACAGAACCACCATGGGAGGAGGACCTCACTCACCGTGGCATTCACCGGTTCCTTATCTCTTTGGTGGTTTAGCAGCGATGCTTGGTCTCATAGCTTTTGCTCTTCTAATCCTCGCTTGCTCTTACTGGCGTCTCTCCGGTTATCTAGACGGCGAGGAAAACCAGAGCAGAGAGAGAGATCTTGAAGTCGGAGATGTGAAACCTGACAAAACGGCGGTGAAGCCTGTAGCTTTGCCGGAGAAGTTCTTGGTGATTATGGCCGGAAATGTCAAACCTACTTACTTAGCAACGCCGTCGGTAAAAACGTGTACTTGTGACGATGATGACGATGAAGATGATGACGTGGAGGGAAGTGATCAGGTGGTGCCGCGGAGTAGTGAAAGTAACGGTGAGACACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016032 GO:0019048 GO:0032879 GO:0032890 GO:0032940 GO:0034762 GO:0034765 GO:0035821 GO:0043207 GO:0043269 GO:0044003 GO:0044070 GO:0044403 GO:0044419 GO:0046903 GO:0050789 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0051952 GO:0051955 GO:0065007 GO:0080143 GO:1903789 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.2

Weight (kDa)

4.5

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57685
malus_domestica	MD13G1263000.v1.1 MD16G1264600.v1.1
prunus_persica	Prupe.1G094400_v2.0.a1
pyrus_communis	pycom16g23390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	409
AccII	CGCG	1 cut(s)	415
AciI	CCGC	3 cut(s)	260, 413, 415
AclI	AACGTT	1 cut(s)	36
AcoI	YGGCCR	1 cut(s)	303
AcyI	GRCGYC	1 cut(s)	175
AfaI	GTAC	1 cut(s)	355
AflIII	ACRYGT	1 cut(s)	350
AgeI	ACCGGT	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	41, 230
AjiI	CACGTC	1 cut(s)	388
AluBI	AGCT	2 cut(s)	140, 275
AluI	AGCT	2 cut(s)	140, 275
Alw26I	GTCTC	3 cut(s)	137, 182, 431
AoxI	GGCC	1 cut(s)	303
ApeKI	GCWGC	1 cut(s)	119
AsiGI	ACCGGT	1 cut(s)	91
AspS9I	GGNCC	1 cut(s)	68
AsuHPI	GGTGA	5 cut(s)	69, 81, 274, 307, 446
AvaII	GGWCC	1 cut(s)	68
BanI	GGYRCC	1 cut(s)	409
BbsI	GAAGAC	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	131
BceAI	ACGGC	3 cut(s)	211, 273, 322
BcgI	CGANNNNNNTGC	2 cut(s)	321, 355
BclI	TGATCA	1 cut(s)	400
BcoDI	GTCTC	3 cut(s)	137, 182, 431
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	270
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	2 cut(s)	120, 413
BlsI	GCNGC	2 cut(s)	121, 414
Bme18I	GGWCC	1 cut(s)	68
BmgBI	CACGTC	1 cut(s)	388
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	2 cut(s)	96, 411
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	16
BsaHI	GRCGYC	1 cut(s)	175
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	3 cut(s)	57, 80, 413
BsaWI	WCCGGW	2 cut(s)	91, 182
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	176
BseDI	CCNNGG	3 cut(s)	57, 80, 413
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	131
Bsh1236I	CGCG	1 cut(s)	415
BshFI	GGCC	1 cut(s)	305
BshNI	GGYRCC	1 cut(s)	409
BshTI	ACCGGT	1 cut(s)	91
BsiSI	CCGG	4 cut(s)	92, 183, 281, 306
BsmAI	GTCTC	3 cut(s)	137, 182, 431
BsmBI	CGTCTC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	305
Bso31I	GGTCTC	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	223, 400
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	3 cut(s)	260, 413, 415
BspANI	GGCC	1 cut(s)	305
BspFNI	CGCG	1 cut(s)	415
BspLI	GGNNCC	2 cut(s)	96, 411
BspQI	GCTCTTC	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	409
BspTNI	GGTCTC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	3 cut(s)	57, 80, 413
BssMI	GATC	2 cut(s)	223, 400
BssNI	GRCGYC	1 cut(s)	175
BssT1I	CCWWGG	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	81, 434
Bst6I	CTCTTC	1 cut(s)	153
BstACI	GRCGYC	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	328
BstDSI	CCRYGG	3 cut(s)	57, 80, 413
BstFNI	CGCG	1 cut(s)	415
BstKTI	GATC	2 cut(s)	226, 403
BstMAI	GTCTC	3 cut(s)	137, 182, 431
BstMBI	GATC	2 cut(s)	223, 400
BstSFI	CTRYAG	1 cut(s)	270
BstUI	CGCG	1 cut(s)	415
BstV1I	GCAGC	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	305
BtgI	CCRYGG	3 cut(s)	57, 80, 413
BtgZI	GCGATG	1 cut(s)	137
BtrI	CACGTC	1 cut(s)	388
Cac8I	GCNNGC	1 cut(s)	163
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	68
Cfr42I	CCGCGG	1 cut(s)	416
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	354
CspAI	ACCGGT	1 cut(s)	91
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	4 cut(s)	140, 268, 275, 305
CviKI_1	RGCY	4 cut(s)	140, 268, 275, 305
CviQI	GTAC	1 cut(s)	354
DdeI	CTNAG	1 cut(s)	328
DpnI	GATC	2 cut(s)	225, 402
DpnII	GATC	2 cut(s)	223, 400
EaeI	YGGCCR	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	68
EcoO109I	RGGNCCY	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	57
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	1 cut(s)	61
FaiI	YATR	3 cut(s)	59, 137, 302
FatI	CATG	1 cut(s)	57
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	2 cut(s)	120, 413
Fsp4HI	GCNGC	2 cut(s)	120, 413
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	2 cut(s)	120, 413
HaeIII	GGCC	1 cut(s)	305
HapII	CCGG	4 cut(s)	92, 183, 281, 306
HgaI	GACGC	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	61
HpaII	CCGG	4 cut(s)	92, 183, 281, 306
HphI	GGTGA	5 cut(s)	69, 81, 274, 307, 446
Hpy166II	GTNNAC	1 cut(s)	354
Hpy188I	TCNGA	2 cut(s)	27, 236
Hpy188III	TCNNGA	2 cut(s)	191, 227
Hpy8I	GTNNAC	1 cut(s)	354
Hpy99I	CGWCG	1 cut(s)	343
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	2 cut(s)	81, 434
HpyCH4IV	ACGT	3 cut(s)	36, 350, 387
HpyF3I	CTNAG	1 cut(s)	328
HpySE526I	ACGT	3 cut(s)	36, 350, 387
Hsp92I	GRCGYC	1 cut(s)	175
Hsp92II	CATG	1 cut(s)	61
Ksp22I	TGATCA	1 cut(s)	400
KspI	CCGCGG	1 cut(s)	416
Kzo9I	GATC	2 cut(s)	223, 400
LguI	GCTCTTC	1 cut(s)	153
LpnPI	CCDG	9 cut(s)	105, 157, 196, 221, 261, 282, 294, 319, 389
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	3 cut(s)	36, 350, 387
MaeIII	GTNAC	2 cut(s)	359, 428
MalI	GATC	2 cut(s)	225, 402
MboI	GATC	2 cut(s)	223, 400
MboII	GAAGA	3 cut(s)	21, 140, 389
MflI	RGATCY	1 cut(s)	223
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	7 cut(s)	33, 56, 59, 81, 167, 193, 385
MspA1I	CMGCKG	1 cut(s)	415
MspI	CCGG	4 cut(s)	92, 183, 281, 306
Mva1269I	GAATGC	1 cut(s)	85
MvnI	CGCG	1 cut(s)	415
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	2 cut(s)	223, 400
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	2 cut(s)	96, 411
NmuCI	GTSAC	1 cut(s)	359
PciSI	GCTCTTC	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	2 cut(s)	347, 369
PctI	GAATGC	1 cut(s)	85
PinAI	ACCGGT	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	121, 414
PpuMI	RGGWCCY	1 cut(s)	68
Psp1406I	AACGTT	1 cut(s)	36
Psp5II	RGGWCCY	1 cut(s)	68
PspN4I	GGNNCC	2 cut(s)	96, 411
PspPI	GGNCC	1 cut(s)	68
PspPPI	RGGWCCY	1 cut(s)	68
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
SacII	CCGCGG	1 cut(s)	416
SapI	GCTCTTC	1 cut(s)	153
SatI	GCNGC	2 cut(s)	120, 413
Sau3AI	GATC	2 cut(s)	223, 400
Sau96I	GGNCC	1 cut(s)	68
SetI	ASST	9 cut(s)	39, 73, 142, 250, 277, 322, 353, 390, 408
SfaNI	GCATC	1 cut(s)	114
SfcI	CTRYAG	1 cut(s)	270
Sfr303I	CCGCGG	1 cut(s)	416
SgrBI	CCGCGG	1 cut(s)	416
SinI	GGWCC	1 cut(s)	68
SsiI	CCGC	3 cut(s)	260, 413, 415
SspI	AATATT	1 cut(s)	17
SspMI	CTAG	1 cut(s)	191
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	2 cut(s)	81, 434
TaiI	ACGT	3 cut(s)	39, 353, 390
TatI	WGTACW	1 cut(s)	353
TauI	GCSGC	1 cut(s)	415
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	1 cut(s)	390
VpaK11BI	GGWCC	1 cut(s)	68
XbaI	TCTAGA	1 cut(s)	190
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.