AT5G59070

Glycosyltransferase Family 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016183
Physical Location & Seq
Forward (+)
23845073 .. 23847393
2321 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G59070.1

Sequence Viewer

Length: 1518 bp
ATGGCTAGAGAAAACCCATTGATGAGCTTCTCCTTTAGTTTCAGATATCTCTGTCACTTTGCTCTACTCCTCTCTCTCCTCTCCTTTGTCTCTTTTCTCTTCAGACACAACACATCACTCTGTTCTTGTCTTTACGATCACAACACCTACGTTAACACATTCGATCATCAGCAAAACAATGAAACCATCGATCTTCTTCGATTCTCTTCTGCTTGGAACCATCTCACTTTCCCTTCTAAACCCAAGAAGACTCTCAAGATCGCTGTGGTGGTCAAGAAATGGCCGAGGAAATCGCAAGCTGGTGGGCTCGAGCGACACGCGCTTACATTGCATCTCGCTCTAGCCAATCGTGGCCACGAGCTTCATGTTTTCACCGCTGCTTCTCCATCGTTCCCTGAATATCAACTGAAAAATCTGATGTTCCATCTCTCTGAGCCAACCGCTGCTGGATATCTTGATCAAGCTTCTGTCTCGCAACAGCTTCAGACGCAGAACGCTAGTGGAAGACCGTTTGACGTAATTCACACAGAGAGCGTTGGGCTTCTCCACACAAGAGCCAAGAATCTCCGTAACGTGGTCGCGTCTTGGCATGGAATCGCTTACGAAACTTTTCACTCTGACATCATCCAAGAACTCCTTCGTCAAGCAGACATCGCCGCCGCCACCGCTGCTGGAACCGAAGAAGAACAGCCACCGCCTTCATCGCCAGCTCTGACGGAGCGAGCGAAGCGAGTCGTCGAGGAAGTCAAATTCTTCCAACGTTACGCTCACCACGTGGCAACTAGCGATCACTGCGGTGACGTACTCAAGAGGATTTACATGATTCCGGAGGAACGTGTCCATATCATTCTAAACGGCGTCGACGAGAACGTTTTCAAACCGGACGTTTCAAAACGTGAGAGCTTTAGAGAGAAATTTGGCGTTAGAAGCGGCAAGAACAAGAAATCTCCTCTGGTTTTGGGAATTGCAGGGAGGTTAGTGAGAGATAAAGGTCATCCTTTGATGTTCTCAGCTTTGAAGCGAGTGTTTGAAGAAAACAAGGAGGCACGTGAAAACGTTGTCGTTTTGGTAGCTGGAGATGGTCCATGGGGAAACAGATATAAAGACCTCGGGTCTACTAATGTGATTGTTCTTGGACCGTTGGATCAAGAAAAGCTAGCGGGATTCTACAACGCGATCGATGTGTTTGTGAATCCGACCCTTCGAGCTCAAGGGCTGGATCACACTCTCTTGGAAGCCATGGTTTCAGGAAAACCGGTCTTAGCTACTAGGCTAGCGAGTATCACTGGGTCAGTGGTTGTCGGTCCACATTTGGGATATACTTTCTCACCAAATGTTGAGTCTCTTACCGAGGCGATTTTGCGGGTTGTTAGCGATGGAACAGAGGAATTACAGAGGAAAGGCAAGGAAGCGCGTGAACGGTCGTTGAGGCTTTTCACGGCGACTAAAATGGCTGATTCATATGAAAGGTTTTTTCTTTGCATTTCGGATCAGAGGTTTTGTACGTTACAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_1_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

505

Amino Acids

56.69

Weight (kDa)

8.95

Isoelectric Point (pI)

43.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_4 PF13439 101 - 289 3.9e-16 Glycosyltransferase Family 4
Glycos_transf_1 PF00534 310 - 474 6.6e-19 Glycosyl transferases group 1
Glyco_trans_1_4 PF13692 319 - 459 2.8e-19 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59070
fragaria_vesca FvH4_3g37200
malus_domestica MD03G1083000.v1.1
prunus_persica Prupe.6G067300_v2.0.a1
pyrus_communis pycom03g06600
rosa_chinensis RchiOBHm_Chr5g0066941
rosa_laevigata RLG00000035895
rosa_multiflora Rmu_sc0008378.1_g000007
rosa_roxburghii Rroxscaffold_1G00014180
rosa_rugosa Rorug05G0379900
rosa_samantha Rh5AG439500 Rh5BG456600 Rh5CG478700 Rh5DG471400
rosa_wichuraiana Rw5G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 861, 1115
AccII CGCG 4 cut(s) 320, 581, 1175, 1414
AccIII TCCGGA 1 cut(s) 826
AclI AACGTT 3 cut(s) 760, 870, 1056
AclWI GGATC 3 cut(s) 1152, 1227, 1497
AcoI YGGCCR 2 cut(s) 281, 352
AcsI RAATTY 2 cut(s) 749, 914
AcuI CTGAAG 2 cut(s) 85, 467
AcvI CACGTG 2 cut(s) 775, 1049
AcyI GRCGYC 1 cut(s) 858
AdeI CACNNNGTG 1 cut(s) 775
AfaI GTAC 2 cut(s) 804, 1504
AfiI CCNNNNNNNGG 2 cut(s) 574, 1313
AflIII ACRYGT 1 cut(s) 835
AgeI ACCGGT 1 cut(s) 1255
AgsI TTSAA 4 cut(s) 877, 891, 1018, 1031
AhdI GACNNNNNGTC 1 cut(s) 1111
AjuI GAANNNNNNNTTGG 2 cut(s) 621, 653
AleI CACNNNNGTG 1 cut(s) 795
Alw21I GWGCWC 1 cut(s) 1210
Alw26I GTCTC 3 cut(s) 94, 475, 1347
AlwI GGATC 3 cut(s) 1152, 1227, 1497
Ama87I CYCGRG 2 cut(s) 308, 1109
Aor13HI TCCGGA 1 cut(s) 826
AoxI GGCC 2 cut(s) 281, 352
ApeKI GCWGC 3 cut(s) 377, 443, 668
ApoI RAATTY 2 cut(s) 749, 914
ArsI GACNNNNNNTTYG 2 cut(s) 1325, 1357
AsiGI ACCGGT 1 cut(s) 1255
Asp700I GAANNNNTTC 3 cut(s) 609, 636, 872
AspLEI GCGC 2 cut(s) 322, 1414
AspS9I GGNCC 3 cut(s) 1082, 1136, 1304
AsuHPI GGTGA 4 cut(s) 364, 761, 809, 1320
AsuNHI GCTAGC 2 cut(s) 1156, 1273
AvaI CYCGRG 2 cut(s) 308, 1109
AvaII GGWCC 3 cut(s) 1082, 1136, 1304
BalI TGGCCA 1 cut(s) 354
BanII GRGCYC 2 cut(s) 309, 1210
BauI CACGAG 1 cut(s) 356
BbrPI CACGTG 2 cut(s) 775, 1049
BbsI GAAGAC 2 cut(s) 254, 511
Bbv12I GWGCWC 1 cut(s) 1210
BbvI GCAGC 3 cut(s) 364, 430, 655
BccI CCATC 6 cut(s) 194, 228, 394, 432, 1073, 1370
BceAI ACGGC 2 cut(s) 871, 1455
BclI TGATCA 1 cut(s) 457
BcoDI GTCTC 3 cut(s) 94, 475, 1347
BfaI CTAG 7 cut(s) 6, 341, 498, 783, 1157, 1269, 1274
BisI GCNGC 6 cut(s) 378, 444, 657, 660, 669, 931
BlsI GCNGC 6 cut(s) 379, 445, 658, 661, 670, 932
Bme18I GGWCC 3 cut(s) 1082, 1136, 1304
BmeRI GACNNNNNGTC 1 cut(s) 1111
BmeT110I CYCGRG 2 cut(s) 308, 1109
BmgT120I GGNCC 3 cut(s) 1082, 1136, 1304
BmiI GGNNCC 2 cut(s) 218, 676
BmrI ACTGGG 1 cut(s) 1296
BmsI GCATC 1 cut(s) 340
BmtI GCTAGC 2 cut(s) 1160, 1277
BmuI ACTGGG 1 cut(s) 1296
BpiI GAAGAC 2 cut(s) 254, 511
BpmI CTGGAG 1 cut(s) 1095
BpuEI CTTGAG 3 cut(s) 239, 791, 1194
Bsa29I ATCGAT 2 cut(s) 189, 1179
BsaAI YACGTR 2 cut(s) 775, 1049
BsaHI GRCGYC 1 cut(s) 858
BsaJI CCNNGG 5 cut(s) 284, 1085, 1108, 1239, 1350
BsaWI WCCGGW 3 cut(s) 826, 880, 1255
Bsc4I CCNNNNNNNGG 2 cut(s) 574, 1313
Bse118I RCCGGY 1 cut(s) 1255
Bse1I ACTGG 1 cut(s) 1291
Bse3DI GCAATG 1 cut(s) 326
BseAI TCCGGA 1 cut(s) 826
BseCI ATCGAT 2 cut(s) 189, 1179
BseDI CCNNGG 5 cut(s) 284, 1085, 1108, 1239, 1350
BseGI GGATG 2 cut(s) 624, 994
BseLI CCNNNNNNNGG 2 cut(s) 574, 1313
BseMI GCAATG 1 cut(s) 326
BseMII CTCAG 2 cut(s) 423, 1023
BseNI ACTGG 1 cut(s) 1291
BseRI GAGGAG 3 cut(s) 59, 68, 939
BseXI GCAGC 3 cut(s) 364, 430, 655
Bsh1236I CGCG 4 cut(s) 320, 581, 1175, 1414
Bsh1285I CGRYCG 2 cut(s) 1179, 1424
BshFI GGCC 2 cut(s) 283, 354
BshTI ACCGGT 1 cut(s) 1255
BshVI ATCGAT 2 cut(s) 189, 1179
BsiEI CGRYCG 2 cut(s) 1179, 1424
BsiHKAI GWGCWC 1 cut(s) 1210
BsiHKCI CYCGRG 2 cut(s) 308, 1109
BsiSI CCGG 3 cut(s) 827, 881, 1256
BslI CCNNNNNNNGG 2 cut(s) 574, 1313
BsmAI GTCTC 3 cut(s) 94, 475, 1347
BsnI GGCC 2 cut(s) 283, 354
BsoBI CYCGRG 2 cut(s) 308, 1109
Bsp1286I GDGCHC 2 cut(s) 309, 1210
Bsp13I TCCGGA 1 cut(s) 826
Bsp19I CCATGG 2 cut(s) 1085, 1239
BspANI GGCC 2 cut(s) 283, 354
BspCNI CTCAG 2 cut(s) 424, 1022
BspDI ATCGAT 2 cut(s) 189, 1179
BspEI TCCGGA 1 cut(s) 826
BspFNI CGCG 4 cut(s) 320, 581, 1175, 1414
BspLI GGNNCC 2 cut(s) 218, 676
BspOI GCTAGC 2 cut(s) 1160, 1277
BspPI GGATC 3 cut(s) 1152, 1227, 1497
BsrDI GCAATG 1 cut(s) 326
BsrFI RCCGGY 1 cut(s) 1255
BsrI ACTGG 1 cut(s) 1291
BssAI RCCGGY 1 cut(s) 1255
BssECI CCNNGG 5 cut(s) 284, 1085, 1108, 1239, 1350
BssNI GRCGYC 1 cut(s) 858
BssSI CACGAG 1 cut(s) 356
BssT1I CCWWGG 2 cut(s) 1085, 1239
Bst2BI CACGAG 1 cut(s) 356
Bst4CI ACNGT 3 cut(s) 510, 1140, 1422
Bst6I CTCTTC 2 cut(s) 104, 211
BstACI GRCGYC 1 cut(s) 858
BstBAI YACGTR 2 cut(s) 775, 1049
BstC8I GCNNGC 5 cut(s) 297, 708, 723, 1158, 1275
BstDEI CTNAG 3 cut(s) 432, 1009, 1261
BstDSI CCRYGG 2 cut(s) 1085, 1239
BstF5I GGATG 2 cut(s) 624, 994
BstFNI CGCG 4 cut(s) 320, 581, 1175, 1414
BstHHI GCGC 2 cut(s) 322, 1414
BstMAI GTCTC 3 cut(s) 94, 475, 1347
BstMCI CGRYCG 2 cut(s) 1179, 1424
BstUI CGCG 4 cut(s) 320, 581, 1175, 1414
BstV1I GCAGC 3 cut(s) 364, 430, 655
BstV2I GAAGAC 2 cut(s) 254, 511
Bsu15I ATCGAT 2 cut(s) 189, 1179
BsuRI GGCC 2 cut(s) 283, 354
BsuTUI ATCGAT 2 cut(s) 189, 1179
BtgI CCRYGG 2 cut(s) 1085, 1239
BtgZI GCGATG 3 cut(s) 637, 687, 1389
BtsCI GGATG 2 cut(s) 624, 994
BtsI GCAGTG 1 cut(s) 790
BtsIMutI CAGTG 3 cut(s) 790, 1284, 1299
Cac8I GCNNGC 5 cut(s) 297, 708, 723, 1158, 1275
CfoI GCGC 2 cut(s) 322, 1414
Cfr10I RCCGGY 1 cut(s) 1255
Cfr13I GGNCC 3 cut(s) 1082, 1136, 1304
ClaI ATCGAT 2 cut(s) 189, 1179
CseI GACGC 3 cut(s) 496, 570, 847
Csp6I GTAC 2 cut(s) 803, 1503
CspAI ACCGGT 1 cut(s) 1255
CviAII CATG 5 cut(s) 365, 590, 820, 1086, 1240
CviQI GTAC 2 cut(s) 803, 1503
DdeI CTNAG 3 cut(s) 432, 1009, 1261
DraIII CACNNNGTG 1 cut(s) 775
DriI GACNNNNNGTC 1 cut(s) 1111
EaeI YGGCCR 2 cut(s) 281, 352
Eam1104I CTCTTC 2 cut(s) 104, 211
Eam1105I GACNNNNNGTC 1 cut(s) 1111
EarI CTCTTC 2 cut(s) 104, 211
Ecl136II GAGCTC 1 cut(s) 1208
Eco130I CCWWGG 2 cut(s) 1085, 1239
Eco24I GRGCYC 2 cut(s) 309, 1210
Eco32I GATATC 2 cut(s) 47, 452
Eco47I GGWCC 3 cut(s) 1082, 1136, 1304
Eco53kI GAGCTC 1 cut(s) 1208
Eco57I CTGAAG 2 cut(s) 85, 467
Eco72I CACGTG 2 cut(s) 775, 1049
Eco88I CYCGRG 2 cut(s) 308, 1109
EcoICRI GAGCTC 1 cut(s) 1208
EcoRV GATATC 2 cut(s) 47, 452
EcoT14I CCWWGG 2 cut(s) 1085, 1239
EcoT38I GRGCYC 2 cut(s) 309, 1210
ErhI CCWWGG 2 cut(s) 1085, 1239
FaeI CATG 5 cut(s) 368, 593, 823, 1089, 1243
FalI AAGNNNNNCTT 2 cut(s) 621, 653
FatI CATG 5 cut(s) 364, 589, 819, 1085, 1239
FauI CCCGC 2 cut(s) 1153, 1356
FauNDI CATATG 1 cut(s) 1462
FbaI TGATCA 1 cut(s) 457
FblI GTMKAC 2 cut(s) 861, 1115
Fnu4HI GCNGC 6 cut(s) 378, 444, 657, 660, 669, 931
FokI GGATG 2 cut(s) 611, 981
FriOI GRGCYC 2 cut(s) 309, 1210
Fsp4HI GCNGC 6 cut(s) 378, 444, 657, 660, 669, 931
FspBI CTAG 7 cut(s) 6, 341, 498, 783, 1157, 1269, 1274
GlaI GCGC 2 cut(s) 321, 1413
GluI GCNGC 6 cut(s) 378, 444, 657, 660, 669, 931
GsuI CTGGAG 1 cut(s) 1095
HaeIII GGCC 2 cut(s) 283, 354
HapII CCGG 3 cut(s) 827, 881, 1256
HgaI GACGC 3 cut(s) 496, 570, 847
HhaI GCGC 2 cut(s) 322, 1414
Hin1I GRCGYC 1 cut(s) 858
Hin1II CATG 5 cut(s) 368, 593, 823, 1089, 1243
Hin6I GCGC 2 cut(s) 320, 1412
HinP1I GCGC 2 cut(s) 320, 1412
HincII GTYRAC 2 cut(s) 154, 862
HindII GTYRAC 2 cut(s) 154, 862
HindIII AAGCTT 2 cut(s) 462, 1512
HpaI GTTAAC 1 cut(s) 154
HpaII CCGG 3 cut(s) 827, 881, 1256
HphI GGTGA 4 cut(s) 364, 761, 809, 1320
Hpy166II GTNNAC 5 cut(s) 154, 862, 1116, 1307, 1418
Hpy188III TCNNGA 7 cut(s) 256, 274, 455, 808, 827, 1148, 1248
Hpy8I GTNNAC 5 cut(s) 154, 862, 1116, 1307, 1418
Hpy99I CGWCG 3 cut(s) 740, 863, 866
HpyAV CCTTC 4 cut(s) 243, 647, 708, 1211
HpyCH4III ACNGT 3 cut(s) 510, 1140, 1422
HpyCH4V TGCA 3 cut(s) 331, 968, 1482
HpyF3I CTNAG 3 cut(s) 432, 1009, 1261
Hsp92I GRCGYC 1 cut(s) 858
Hsp92II CATG 5 cut(s) 368, 593, 823, 1089, 1243
HspAI GCGC 2 cut(s) 320, 1412
Kpn2I TCCGGA 1 cut(s) 826
Ksp22I TGATCA 1 cut(s) 457
KspAI GTTAAC 1 cut(s) 154
LmnI GCTCC 1 cut(s) 718
Lsp1109I GCAGC 3 cut(s) 364, 430, 655
LweI GCATC 1 cut(s) 340
MaeI CTAG 7 cut(s) 6, 341, 498, 783, 1157, 1269, 1274
MaeIII GTNAC 5 cut(s) 53, 569, 761, 797, 1506
MhlI GDGCHC 2 cut(s) 309, 1210
MlsI TGGCCA 1 cut(s) 354
MluCI AATT 5 cut(s) 519, 749, 914, 963, 1388
MluNI TGGCCA 1 cut(s) 354
MlyI GAGTC 3 cut(s) 244, 741, 1349
MmeI TCCRAC 3 cut(s) 781, 1122, 1220
Mox20I TGGCCA 1 cut(s) 354
MroI TCCGGA 1 cut(s) 826
MroXI GAANNNNTTC 3 cut(s) 609, 636, 872
MscI TGGCCA 1 cut(s) 354
MseI TTAA 2 cut(s) 153, 1516
MslI CAYNNNNRTG 1 cut(s) 795
Msp20I TGGCCA 1 cut(s) 354
MspA1I CMGCKG 3 cut(s) 377, 443, 668
MspI CCGG 3 cut(s) 827, 881, 1256
MvnI CGCG 4 cut(s) 320, 581, 1175, 1414
NcoI CCATGG 2 cut(s) 1085, 1239
NdeI CATATG 1 cut(s) 1462
NheI GCTAGC 2 cut(s) 1156, 1273
NlaIII CATG 5 cut(s) 368, 593, 823, 1089, 1243
NlaIV GGNNCC 2 cut(s) 218, 676
NmeAIII GCCGAG 1 cut(s) 309
NmuCI GTSAC 2 cut(s) 53, 797
OliI CACNNNNGTG 1 cut(s) 795
PaeR7I CTCGAG 1 cut(s) 308
PcsI WCGNNNNNNNCGW 4 cut(s) 722, 771, 861, 867
PdmI GAANNNNTTC 3 cut(s) 609, 636, 872
PfeI GAWTC 7 cut(s) 201, 562, 594, 823, 1164, 1192, 1457
PinAI ACCGGT 1 cut(s) 1255
PkrI GCNGC 6 cut(s) 379, 445, 658, 661, 670, 932
Ple19I CGATCG 1 cut(s) 1179
PleI GAGTC 3 cut(s) 244, 740, 1348
PmaCI CACGTG 2 cut(s) 775, 1049
PmlI CACGTG 2 cut(s) 775, 1049
PpsI GAGTC 3 cut(s) 244, 740, 1348
Ppu21I YACGTR 2 cut(s) 775, 1049
Psp124BI GAGCTC 1 cut(s) 1210
Psp1406I AACGTT 3 cut(s) 760, 870, 1056
PspCI CACGTG 2 cut(s) 775, 1049
PspN4I GGNNCC 2 cut(s) 218, 676
PspPI GGNCC 3 cut(s) 1082, 1136, 1304
PspXI VCTCGAGB 1 cut(s) 308
PvuI CGATCG 1 cut(s) 1179
RsaI GTAC 2 cut(s) 804, 1504
RsaNI GTAC 2 cut(s) 803, 1503
RseI CAYNNNNRTG 1 cut(s) 795
SacI GAGCTC 1 cut(s) 1210
SalI GTCGAC 1 cut(s) 860
SaqAI TTAA 2 cut(s) 153, 1516
SatI GCNGC 6 cut(s) 378, 444, 657, 660, 669, 931
Sau96I GGNCC 3 cut(s) 1082, 1136, 1304
SchI GAGTC 3 cut(s) 244, 741, 1349
SduI GDGCHC 2 cut(s) 309, 1210
SfaNI GCATC 1 cut(s) 340
Sfr274I CTCGAG 1 cut(s) 308
SgrDI CGTCGACG 1 cut(s) 860
SinI GGWCC 3 cut(s) 1082, 1136, 1304
SlaI CTCGAG 1 cut(s) 308
SmiMI CAYNNNNRTG 1 cut(s) 795
SmlI CTYRAG 4 cut(s) 254, 308, 806, 1209
SmoI CTYRAG 4 cut(s) 254, 308, 806, 1209
Sse9I AATT 5 cut(s) 519, 749, 914, 963, 1388
SspMI CTAG 7 cut(s) 6, 341, 498, 783, 1157, 1269, 1274
SstI GAGCTC 1 cut(s) 1210
StyI CCWWGG 2 cut(s) 1085, 1239
TaaI ACNGT 3 cut(s) 510, 1140, 1422
TaqI TCGA 8 cut(s) 162, 189, 199, 309, 738, 861, 1179, 1204
TaqII GACCGA 1 cut(s) 1292
TasI AATT 5 cut(s) 519, 749, 914, 963, 1388
TauI GCSGC 3 cut(s) 659, 662, 933
TfiI GAWTC 7 cut(s) 201, 562, 594, 823, 1164, 1192, 1457
Tru1I TTAA 2 cut(s) 153, 1516
Tru9I TTAA 2 cut(s) 153, 1516
TscAI CASTG 3 cut(s) 797, 1291, 1299
TseFI GTSAC 2 cut(s) 53, 797
TseI GCWGC 3 cut(s) 377, 443, 668
Tsp45I GTSAC 2 cut(s) 53, 797
TspDTI ATGAA 5 cut(s) 195, 353, 690, 1449, 1479
TspGWI ACGGA 2 cut(s) 557, 731
TspRI CASTG 3 cut(s) 797, 1291, 1299
VpaK11BI GGWCC 3 cut(s) 1082, 1136, 1304
XapI RAATTY 2 cut(s) 749, 914
XhoI CTCGAG 1 cut(s) 308
XmiI GTMKAC 2 cut(s) 861, 1115
XmnI GAANNNNTTC 3 cut(s) 609, 636, 872
XspI CTAG 7 cut(s) 6, 341, 498, 783, 1157, 1269, 1274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.