Prupe.6G067300_v2.0.a1

Glycosyltransferase Family 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016183
Physical Location & Seq
Forward (+)
4642324 .. 4643781
1458 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G067300.1

Sequence Viewer

Length: 1458 bp
ATGGCGAAGGATTCAGTTACTGTGTTGAACTTTCGGCGTCTTTGTTGCATCGTCTTGGTGTTCTGTGCGTGGTCATTTATCTCATTCATTTACTGGTGCCATTACTATGGTCCAGGCTACTCTCTATACCAAAAAATGGAGCTGAAGCAAAACCAAATCAATGACCTCCTTGCATTCCCTTCTGCATGGAATCAGCTTGCTTTTTCCTCAAAACCGCCTCCGAAGCTTCTTAAAATTGCTCTGTTTGTCAAGAAATGGCCTCATAGATCTCAAGCAGGAGGGCTTGAAAGGCATGCCTTGACCCTCCACCTTGCACTTGCCAAAAGGGGTCATGAGCTTCACATCTTTACCACTTCTTCAAATTCCTCCTTCCCAAGGTACCCGATAAGCAATTTGTATTTTCACCTCTCAAAACCAACTGCTGCTGGGTATCTGGACCAAGCTCTGGTTTGGAAGCTGTTTCAAACTCAAAACTCAACAGGAAGGCCTTTTGATGTGATCCACACTGAAAGTGTCGGCCTCTTGCATACTCGATCACGTAACCAGACAAACCTGGCTGTTACTTGGCATGGGATTGCATATGAGACTATCCATTCTGACGTCATACAAGAACTTTTGCGCAGCCCTGAAGAACCACAGGGATCTGCATTGACTGAAAGAACTATGAAGGTTATTGAAGAGGTGAGGTTTTTCCCCAGTTATGCTCACCATGTTGCTACCAGTGACCATGTTGGAGATGTACTCAAGAGGATTTACATGCTCCCGGATGATCGTGTTCACATTATTCTTAACGGTGTCGATGAGGATATTTTCAAGCCAGACATTGCCAAGGGGAATGACTTTAAGAAAAAATTTGGGGTACCTGAATCCAGGACACTGGTTTTGGGAATGGCTGGAAGGTTGGTAAAGGATAAAGGGCACCCCTTGATGTTTGAGGCTTTGAAACAAATGCTCAAGGAAAATGAAGCATTTCGGCAAAGTATTGTGGTTCTGGTTGCTGGTAATGGTCCTTGGGGTGCTAGGTACAGAGATCTTGGAACTAATGTACTTGTTTTGGGGCCACTGGAACAAGCTCAGCTTGCTGAGTTCTATAACGCAGTCGATATTTTTGTGAACCCGACTCTACGCGCTCAGGGATTGGATCATACTTTGTTAGAAGCAATGCTCTCCGGGAAGCCAGTAATGGCAACAAGGCTTGCCAGCATTACAGGTTCTGTGGTTGTTGGCACAGAAGTGGGATATACATTTTCACCAACAATAACTACACTAAAGACGACCCTCTATAGAGTTTGGAAAGATGGCAGAGGAGACTTAAAGCAGAAAGGCCAGGCAGCAAGGCAGAGAGGTTTGCAATTGTTCACTGCTACCAAAATGGCTGCTGCTTATGAAAGGCTTTTCCTTTGCATATCCAATGATGAGAACAGAGGGGAGAACTATTGTCAATATCAGATTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_1_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

486

Amino Acids

54.76

Weight (kDa)

9.26

Isoelectric Point (pI)

31.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59070
fragaria_vesca FvH4_3g37200
malus_domestica MD03G1083000.v1.1
prunus_persica Prupe.6G067300_v2.0.a1
pyrus_communis pycom03g06600
rosa_chinensis RchiOBHm_Chr5g0066941
rosa_laevigata RLG00000035895
rosa_multiflora Rmu_sc0008378.1_g000007
rosa_roxburghii Rroxscaffold_1G00014180
rosa_rugosa Rorug05G0379900
rosa_samantha Rh5AG439500 Rh5BG456600 Rh5CG478700 Rh5DG471400
rosa_wichuraiana Rw5G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 603
Acc16I TGCGCA 1 cut(s) 620
Acc65I GGTACC 2 cut(s) 378, 859
AccB1I GGYRCC 4 cut(s) 96, 378, 859, 918
AccB7I CCANNNNNTGG 2 cut(s) 136, 445
AccII CGCG 1 cut(s) 1128
AciI CCGC 1 cut(s) 215
AclWI GGATC 3 cut(s) 493, 649, 1149
AcsI RAATTY 2 cut(s) 361, 851
AcuI CTGAAG 2 cut(s) 164, 648
AcyI GRCGYC 2 cut(s) 37, 600
AfaI GTAC 5 cut(s) 380, 741, 861, 1025, 1047
AfiI CCNNNNNNNGG 3 cut(s) 136, 375, 445
AgsI TTSAA 7 cut(s) 28, 287, 360, 464, 677, 814, 943
AjnI CCWGG 4 cut(s) 112, 552, 869, 1326
AleI CACNNNNGTG 1 cut(s) 1232
AluBI AGCT 8 cut(s) 142, 196, 226, 337, 443, 457, 1073, 1078
AluI AGCT 8 cut(s) 142, 196, 226, 337, 443, 457, 1073, 1078
Alw26I GTCTC 2 cut(s) 578, 1302
AlwI GGATC 3 cut(s) 493, 649, 1149
AlwNI CAGNNNCTG 2 cut(s) 20, 1214
AoxI GGCC 5 cut(s) 257, 485, 517, 1058, 1324
ApeKI GCWGC 5 cut(s) 422, 621, 1331, 1376, 1379
ApoI RAATTY 2 cut(s) 361, 851
ArsI GACNNNNNNTTYG 2 cut(s) 865, 897
Asp700I GAANNNNTTC 1 cut(s) 969
Asp718I GGTACC 2 cut(s) 378, 859
AspLEI GCGC 2 cut(s) 621, 1130
AspS9I GGNCC 4 cut(s) 110, 436, 1007, 1058
AsuC2I CCSGG 2 cut(s) 764, 1171
AsuHPI GGTGA 4 cut(s) 395, 694, 698, 1242
AvaII GGWCC 3 cut(s) 110, 436, 1007
BaeGI GKGCMC 1 cut(s) 921
BanI GGYRCC 4 cut(s) 96, 378, 859, 918
BbvI GCAGC 5 cut(s) 409, 633, 1343, 1363, 1366
BccI CCATC 1 cut(s) 1292
BciT130I CCWGG 4 cut(s) 114, 554, 871, 1328
BcnI CCSGG 2 cut(s) 764, 1171
BcoDI GTCTC 2 cut(s) 578, 1302
BfaI CTAG 1 cut(s) 1020
BfmI CTRYAG 1 cut(s) 1282
BglII AGATCT 2 cut(s) 266, 1030
BisI GCNGC 5 cut(s) 423, 622, 1332, 1377, 1380
BlpI GCTNAGC 1 cut(s) 1074
BlsI GCNGC 5 cut(s) 424, 623, 1333, 1378, 1381
Bme1390I CCNGG 6 cut(s) 114, 554, 764, 871, 1171, 1328
Bme18I GGWCC 3 cut(s) 110, 436, 1007
BmgT120I GGNCC 4 cut(s) 110, 436, 1007, 1058
BmiI GGNNCC 5 cut(s) 98, 380, 861, 920, 1059
BmrFI CCNGG 6 cut(s) 114, 554, 764, 871, 1171, 1328
BmrI ACTGGG 1 cut(s) 690
BmsI GCATC 1 cut(s) 57
BmuI ACTGGG 1 cut(s) 690
BplI GAGNNNNNCTC 2 cut(s) 726, 758
Bpu10I CCTNAGC 1 cut(s) 1131
Bpu1102I GCTNAGC 1 cut(s) 1074
BpuEI CTTGAG 3 cut(s) 255, 728, 938
BpuMI CCSGG 2 cut(s) 764, 1171
BsaAI YACGTR 1 cut(s) 539
BsaHI GRCGYC 2 cut(s) 37, 600
BsaJI CCNNGG 3 cut(s) 374, 828, 1010
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 375, 445
Bse1I ACTGG 6 cut(s) 98, 696, 720, 882, 1068, 1178
Bse3DI GCAATG 2 cut(s) 822, 1167
BseBI CCWGG 4 cut(s) 114, 554, 871, 1328
BseDI CCNNGG 3 cut(s) 374, 828, 1010
BseGI GGATG 1 cut(s) 772
BseLI CCNNNNNNNGG 3 cut(s) 136, 375, 445
BseMI GCAATG 2 cut(s) 822, 1167
BseMII CTCAG 3 cut(s) 1074, 1088, 1145
BseNI ACTGG 6 cut(s) 98, 696, 720, 882, 1068, 1178
BseRI GAGGAG 1 cut(s) 1320
BseSI GKGCMC 1 cut(s) 921
BseXI GCAGC 5 cut(s) 409, 633, 1343, 1363, 1366
BseYI CCCAGC 1 cut(s) 425
Bsh1236I CGCG 1 cut(s) 1128
BshFI GGCC 5 cut(s) 259, 487, 519, 1060, 1326
BshNI GGYRCC 4 cut(s) 96, 378, 859, 918
BsiSI CCGG 2 cut(s) 764, 1170
BslI CCNNNNNNNGG 3 cut(s) 136, 375, 445
BsmAI GTCTC 2 cut(s) 578, 1302
BsmI GAATGC 1 cut(s) 173
BsnI GGCC 5 cut(s) 259, 487, 519, 1060, 1326
Bsp1286I GDGCHC 1 cut(s) 921
Bsp143I GATC 7 cut(s) 266, 498, 533, 641, 769, 1030, 1141
Bsp1720I GCTNAGC 1 cut(s) 1074
BspACI CCGC 1 cut(s) 215
BspANI GGCC 5 cut(s) 259, 487, 519, 1060, 1326
BspCNI CTCAG 3 cut(s) 1075, 1087, 1144
BspFNI CGCG 1 cut(s) 1128
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 5 cut(s) 98, 380, 861, 920, 1059
BspPI GGATC 3 cut(s) 493, 649, 1149
BspT107I GGYRCC 4 cut(s) 96, 378, 859, 918
BsrDI GCAATG 2 cut(s) 822, 1167
BsrI ACTGG 6 cut(s) 98, 696, 720, 882, 1068, 1178
BssECI CCNNGG 3 cut(s) 374, 828, 1010
BssMI GATC 7 cut(s) 266, 498, 533, 641, 769, 1030, 1141
BssNI GRCGYC 2 cut(s) 37, 600
BssT1I CCWWGG 3 cut(s) 374, 828, 1010
Bst2UI CCWGG 4 cut(s) 114, 554, 871, 1328
Bst4CI ACNGT 2 cut(s) 22, 794
Bst6I CTCTTC 1 cut(s) 672
BstACI GRCGYC 2 cut(s) 37, 600
BstBAI YACGTR 1 cut(s) 539
BstC8I GCNNGC 5 cut(s) 198, 294, 1080, 1197, 1201
BstDEI CTNAG 3 cut(s) 1074, 1083, 1131
BstENI CCTNNNNNAGG 1 cut(s) 373
BstF5I GGATG 1 cut(s) 772
BstFNI CGCG 1 cut(s) 1128
BstHHI GCGC 2 cut(s) 621, 1130
BstKTI GATC 7 cut(s) 269, 501, 536, 644, 772, 1033, 1144
BstMAI GTCTC 2 cut(s) 578, 1302
BstMBI GATC 7 cut(s) 266, 498, 533, 641, 769, 1030, 1141
BstMWI GCNNNNNNNGC 3 cut(s) 223, 289, 1079
BstNI CCWGG 4 cut(s) 114, 554, 871, 1328
BstNSI RCATGY 2 cut(s) 296, 760
BstSCI CCNGG 6 cut(s) 112, 552, 762, 869, 1169, 1326
BstSFI CTRYAG 1 cut(s) 1282
BstSLI GKGCMC 1 cut(s) 921
BstUI CGCG 1 cut(s) 1128
BstV1I GCAGC 5 cut(s) 409, 633, 1343, 1363, 1366
BstX2I RGATCY 3 cut(s) 266, 641, 1030
BstXI CCANNNNNNTGG 2 cut(s) 107, 877
BstYI RGATCY 3 cut(s) 266, 641, 1030
BsuRI GGCC 5 cut(s) 259, 487, 519, 1060, 1326
BtsCI GGATG 1 cut(s) 772
BtsI GCAGTG 1 cut(s) 1359
BtsIMutI CAGTG 5 cut(s) 504, 727, 875, 1061, 1359
Cac8I GCNNGC 5 cut(s) 198, 294, 1080, 1197, 1201
CaiI CAGNNNCTG 2 cut(s) 20, 1214
CciI TCATGA 1 cut(s) 331
CfoI GCGC 2 cut(s) 621, 1130
Cfr13I GGNCC 4 cut(s) 110, 436, 1007, 1058
CseI GACGC 1 cut(s) 26
Csp6I GTAC 5 cut(s) 379, 740, 860, 1024, 1046
CviAII CATG 8 cut(s) 186, 293, 332, 569, 710, 728, 757, 1455
CviQI GTAC 5 cut(s) 379, 740, 860, 1024, 1046
DdeI CTNAG 3 cut(s) 1074, 1083, 1131
DpnI GATC 7 cut(s) 268, 500, 535, 643, 771, 1032, 1143
DpnII GATC 7 cut(s) 266, 498, 533, 641, 769, 1030, 1141
Eam1104I CTCTTC 1 cut(s) 672
EarI CTCTTC 1 cut(s) 672
Eco130I CCWWGG 3 cut(s) 374, 828, 1010
Eco147I AGGCCT 1 cut(s) 487
Eco47I GGWCC 3 cut(s) 110, 436, 1007
Eco57I CTGAAG 2 cut(s) 164, 648
EcoNI CCTNNNNNAGG 1 cut(s) 373
EcoRII CCWGG 4 cut(s) 112, 552, 869, 1326
EcoT14I CCWWGG 3 cut(s) 374, 828, 1010
ErhI CCWWGG 3 cut(s) 374, 828, 1010
FaeI CATG 8 cut(s) 189, 296, 335, 572, 713, 731, 760, 1458
FalI AAGNNNNNCTT 2 cut(s) 1062, 1094
FatI CATG 8 cut(s) 185, 292, 331, 568, 709, 727, 756, 1454
FauNDI CATATG 1 cut(s) 580
Fnu4HI GCNGC 5 cut(s) 423, 622, 1332, 1377, 1380
FokI GGATG 1 cut(s) 779
Fsp4HI GCNGC 5 cut(s) 423, 622, 1332, 1377, 1380
FspBI CTAG 1 cut(s) 1020
FspI TGCGCA 1 cut(s) 620
GlaI GCGC 2 cut(s) 620, 1129
GluI GCNGC 5 cut(s) 423, 622, 1332, 1377, 1380
GsaI CCCAGC 1 cut(s) 429
HaeIII GGCC 5 cut(s) 259, 487, 519, 1060, 1326
HapII CCGG 2 cut(s) 764, 1170
HgaI GACGC 1 cut(s) 26
HhaI GCGC 2 cut(s) 621, 1130
Hin1I GRCGYC 2 cut(s) 37, 600
Hin1II CATG 8 cut(s) 189, 296, 335, 572, 713, 731, 760, 1458
Hin6I GCGC 2 cut(s) 619, 1128
HinP1I GCGC 2 cut(s) 619, 1128
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 5 cut(s) 11, 190, 866, 1120, 1450
HpaII CCGG 2 cut(s) 764, 1170
HphI GGTGA 4 cut(s) 395, 694, 698, 1242
Hpy166II GTNNAC 3 cut(s) 778, 1114, 1359
Hpy188I TCNGA 3 cut(s) 222, 598, 1449
Hpy188III TCNNGA 4 cut(s) 250, 332, 434, 745
Hpy8I GTNNAC 3 cut(s) 778, 1114, 1359
HpyAV CCTTC 5 cut(s) 189, 379, 477, 661, 891
HpyCH4III ACNGT 2 cut(s) 22, 794
HpyCH4IV ACGT 2 cut(s) 538, 600
HpyCH4V TGCA 9 cut(s) 48, 173, 185, 314, 526, 578, 647, 1351, 1404
HpyF10VI GCNNNNNNNGC 3 cut(s) 223, 289, 1079
HpyF3I CTNAG 3 cut(s) 1074, 1083, 1131
HpySE526I ACGT 2 cut(s) 538, 600
Hsp92I GRCGYC 2 cut(s) 37, 600
Hsp92II CATG 8 cut(s) 189, 296, 335, 572, 713, 731, 760, 1458
HspAI GCGC 2 cut(s) 619, 1128
KpnI GGTACC 2 cut(s) 382, 863
Kzo9I GATC 7 cut(s) 266, 498, 533, 641, 769, 1030, 1141
LmnI GCTCC 2 cut(s) 139, 765
Lsp1109I GCAGC 5 cut(s) 409, 633, 1343, 1363, 1366
LweI GCATC 1 cut(s) 57
MaeI CTAG 1 cut(s) 1020
MaeII ACGT 2 cut(s) 538, 600
MaeIII GTNAC 4 cut(s) 16, 539, 559, 722
MalI GATC 7 cut(s) 268, 500, 535, 643, 771, 1032, 1143
MboI GATC 7 cut(s) 266, 498, 533, 641, 769, 1030, 1141
MboII GAAGA 3 cut(s) 348, 641, 689
MfeI CAATTG 1 cut(s) 1352
MflI RGATCY 3 cut(s) 266, 641, 1030
MhlI GDGCHC 1 cut(s) 921
MluCI AATT 5 cut(s) 234, 361, 391, 851, 1352
MlyI GAGTC 1 cut(s) 1114
MmeI TCCRAC 1 cut(s) 712
MroXI GAANNNNTTC 1 cut(s) 969
MseI TTAA 4 cut(s) 231, 789, 843, 1313
MslI CAYNNNNRTG 2 cut(s) 105, 1232
MspI CCGG 2 cut(s) 764, 1170
MspR9I CCNGG 6 cut(s) 114, 554, 764, 871, 1171, 1328
MunI CAATTG 1 cut(s) 1352
Mva1269I GAATGC 1 cut(s) 173
MvaI CCWGG 4 cut(s) 114, 554, 871, 1328
MvnI CGCG 1 cut(s) 1128
MwoI GCNNNNNNNGC 3 cut(s) 223, 289, 1079
NciI CCSGG 2 cut(s) 764, 1171
NdeI CATATG 1 cut(s) 580
NdeII GATC 7 cut(s) 266, 498, 533, 641, 769, 1030, 1141
NlaIII CATG 8 cut(s) 189, 296, 335, 572, 713, 731, 760, 1458
NlaIV GGNNCC 5 cut(s) 98, 380, 861, 920, 1059
NmuCI GTSAC 1 cut(s) 722
NsbI TGCGCA 1 cut(s) 620
NspI RCATGY 2 cut(s) 296, 760
OliI CACNNNNGTG 1 cut(s) 1232
PaeI GCATGC 1 cut(s) 296
PagI TCATGA 1 cut(s) 331
PceI AGGCCT 1 cut(s) 487
PctI GAATGC 1 cut(s) 173
PdmI GAANNNNTTC 1 cut(s) 969
PfeI GAWTC 4 cut(s) 11, 190, 866, 1450
PflMI CCANNNNNTGG 2 cut(s) 136, 445
PfoI TCCNGGA 3 cut(s) 762, 869, 1169
PkrI GCNGC 5 cut(s) 424, 623, 1333, 1378, 1381
PleI GAGTC 1 cut(s) 1114
PpsI GAGTC 1 cut(s) 1114
Ppu21I YACGTR 1 cut(s) 539
Psp6I CCWGG 4 cut(s) 112, 552, 869, 1326
PspFI CCCAGC 1 cut(s) 425
PspGI CCWGG 4 cut(s) 112, 552, 869, 1326
PspN4I GGNNCC 5 cut(s) 98, 380, 861, 920, 1059
PspPI GGNCC 4 cut(s) 110, 436, 1007, 1058
PstNI CAGNNNCTG 2 cut(s) 20, 1214
PsuI RGATCY 3 cut(s) 266, 641, 1030
RsaI GTAC 5 cut(s) 380, 741, 861, 1025, 1047
RsaNI GTAC 5 cut(s) 379, 740, 860, 1024, 1046
RseI CAYNNNNRTG 2 cut(s) 105, 1232
SaqAI TTAA 4 cut(s) 231, 789, 843, 1313
SatI GCNGC 5 cut(s) 423, 622, 1332, 1377, 1380
Sau3AI GATC 7 cut(s) 266, 498, 533, 641, 769, 1030, 1141
Sau96I GGNCC 4 cut(s) 110, 436, 1007, 1058
SchI GAGTC 1 cut(s) 1114
ScrFI CCNGG 6 cut(s) 114, 554, 764, 871, 1171, 1328
SduI GDGCHC 1 cut(s) 921
SfaNI GCATC 1 cut(s) 57
SfcI CTRYAG 1 cut(s) 1282
SinI GGWCC 3 cut(s) 110, 436, 1007
SmiMI CAYNNNNRTG 2 cut(s) 105, 1232
SmlI CTYRAG 3 cut(s) 270, 743, 953
SmoI CTYRAG 3 cut(s) 270, 743, 953
SphI GCATGC 1 cut(s) 296
Sse9I AATT 5 cut(s) 234, 361, 391, 851, 1352
SseBI AGGCCT 1 cut(s) 487
SsiI CCGC 1 cut(s) 215
SspMI CTAG 1 cut(s) 1020
StuI AGGCCT 1 cut(s) 487
StyD4I CCNGG 6 cut(s) 112, 552, 762, 869, 1169, 1326
StyI CCWWGG 3 cut(s) 374, 828, 1010
TaaI ACNGT 2 cut(s) 22, 794
TaiI ACGT 2 cut(s) 541, 603
TaqI TCGA 3 cut(s) 532, 798, 1101
TasI AATT 5 cut(s) 234, 361, 391, 851, 1352
TatI WGTACW 2 cut(s) 739, 1045
TfiI GAWTC 4 cut(s) 11, 190, 866, 1450
Tru1I TTAA 4 cut(s) 231, 789, 843, 1313
Tru9I TTAA 4 cut(s) 231, 789, 843, 1313
TscAI CASTG 5 cut(s) 511, 727, 882, 1068, 1366
TseFI GTSAC 1 cut(s) 722
TseI GCWGC 5 cut(s) 422, 621, 1331, 1376, 1379
Tsp45I GTSAC 1 cut(s) 722
TspDTI ATGAA 4 cut(s) 76, 680, 978, 1401
TspRI CASTG 5 cut(s) 511, 727, 882, 1068, 1366
Van91I CCANNNNNTGG 2 cut(s) 136, 445
VpaK11BI GGWCC 3 cut(s) 110, 436, 1007
XagI CCTNNNNNAGG 1 cut(s) 373
XapI RAATTY 2 cut(s) 361, 851
XceI RCATGY 2 cut(s) 296, 760
XmnI GAANNNNTTC 1 cut(s) 969
XspI CTAG 1 cut(s) 1020
ZraI GACGTC 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.