FvH4_3g37200

Glycosyltransferase Family 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016183
Physical Location & Seq
Reverse (-)
31862974 .. 31864440
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37200.t1

Sequence Viewer

Length: 1467 bp
ATGGCTAAGGATCCAGTTGCTGGATTCAGCTTCCGCCGTCTTTGCTCCATTGTCTCAGTGCTGTGTGCATGGTCCTTCATCTCATTCATTTTCTGGTGTCATCGCTATGGTCCCTGCTATTCTCTATACCAAAAGATGGAGCAGAAGCAAAGCCAGATCATTGAACTTCTTTCTTTCCCTTCTGCCTGGAATCAGCTTGCTTTTTCCTCAAATCCGCCGCCAAAGCTCCTCAAAATTGCTCTCTTCGTCAAGAAATGGCCTCATAGATCTCAAGCAGGAGGGCTAGAACGCCATGCTTTGACTCTCCACCTTGCACTCGCCAAAAGAGGTCATGAACTTCACATCTTCACCAGTTCTCCTCCAAATTCCTCCTTTCCAAGGTACCCTTTCAATAATTTACGCTTTCACCTCTCAAAGCCAACAGCTTCTGGTTACCTGGACCAAGCTCTAGTTTGGAAACTATTTCAAACCCAAAACTCAACAGGAAGACCTTTTGATGTGATCCACACTGAAAGTGTTGGTCTCATGCATACTCGATCACGCAATCATACGAATCTGGCTGTTACTTGGCATGGGATTGCATATGAAACTATCCATTCTGACATCATACAAGAACTTATTCGGAGTCCTGAAGAACCACAGGGGTACGCATTGGCTGAAAGAGTTACCAAGGTTGTCGAAGAGGTGAGGTTCTTCCCCAGTTATGCTCACCATGTTGCTACCAGTGACCATGTCGGAGATGTACTGAAGAGGATTTACATGATCCCGGATGAACGCGTACACATTATTCTTAATGGTGTTGATGAGGAGATTTTCAAGCCAGACATTGTCAAAGGGAAGGATTTCAAGAAAAGGTTTGGGGTGCCTGAATCTAAGACGTTGGTTTTAGGAATGGCTGGGAGGTTGGTGAAGGATAAAGGACATCCATTGATGTTCGAGGCTTTGAAGCAAATGCTCAGTGAAAATGATGCATTCAGGCATAGTGTTGTCCTTCTAGTTGCTGGCAATGGTCCTTGGGGAGCTAGGTACAGAGATCTTGGATCTAATGTTCTTGTTTTAGGGCCACTAGAACAAGCTCAGCTAGCTGACTTCTACAACGCAATAGATATTTTCGTGAACCCAACTCTTCGTGCTCAGGGATTGGATCATACTTTGTTGGAAGCAATGCTCTCTGGTAAGCCAGTAATGGCGACAAGACTTGCAAGCATTACAGGCTCTGTGGTTGTTGGGACAGAAGTCGGTTATACATTTTCACCGACAATAGCTTCACTAAAGAAGACCCTCTATAGAGTTTGGGATGATGGCAGAGGAGGTCTAAAGCAGAAAGGTCAGGCAGCAAGGCAAAGAGGCTTACAATTGTTCACTGCTACCAAGATGGTAGCTGCTTATGAAAGGCTATTCCTTTGTTTATCCAATGATGAGAAAAATGGGGAAAACTACTGTCAATATCAAGCTCCTTTACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_1_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

489

Amino Acids

54.99

Weight (kDa)

9.34

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_4 PF13439 93 - 270 2.1e-18 Glycosyltransferase Family 4
Glyco_trans_4_4 PF13579 93 - 266 2.7e-09 Glycosyl transferase 4-like domain
Glycos_transf_1 PF00534 285 - 437 5.4e-15 Glycosyl transferases group 1
Glyco_trans_1_4 PF13692 295 - 432 1.1e-16 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59070
fragaria_vesca FvH4_3g37200
malus_domestica MD03G1083000.v1.1
prunus_persica Prupe.6G067300_v2.0.a1
pyrus_communis pycom03g06600
rosa_chinensis RchiOBHm_Chr5g0066941
rosa_laevigata RLG00000035895
rosa_multiflora Rmu_sc0008378.1_g000007
rosa_roxburghii Rroxscaffold_1G00014180
rosa_rugosa Rorug05G0379900
rosa_samantha Rh5AG439500 Rh5BG456600 Rh5CG478700 Rh5DG471400
rosa_wichuraiana Rw5G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 381
AccB1I GGYRCC 2 cut(s) 381, 862
AccB7I CCANNNNNTGG 2 cut(s) 20, 136
AccII CGCG 1 cut(s) 777
AciI CCGC 3 cut(s) 34, 215, 218
AclWI GGATC 6 cut(s) 5, 18, 496, 757, 1048, 1152
AcsI RAATTY 1 cut(s) 364
AcuI CTGAAG 2 cut(s) 651, 767
AfaI GTAC 5 cut(s) 383, 647, 744, 780, 1028
AfiI CCNNNNNNNGG 3 cut(s) 20, 136, 378
AflIII ACRYGT 1 cut(s) 775
AgsI TTSAA 6 cut(s) 164, 391, 467, 817, 847, 946
AjnI CCWGG 2 cut(s) 185, 435
AloI GAACNNNNNNTCC 2 cut(s) 1032, 1064
Alw21I GWGCWC 1 cut(s) 1135
Alw26I GTCTC 2 cut(s) 58, 527
AlwI GGATC 6 cut(s) 5, 18, 496, 757, 1048, 1152
AlwNI CAGNNNCTG 3 cut(s) 20, 428, 1217
AoxI GGCC 2 cut(s) 257, 1061
ApeKI GCWGC 2 cut(s) 1334, 1382
ApoI RAATTY 1 cut(s) 364
Asp700I GAANNNNTTC 2 cut(s) 618, 842
Asp718I GGTACC 1 cut(s) 381
AspS9I GGNCC 5 cut(s) 72, 110, 439, 1010, 1061
AsuC2I CCSGG 1 cut(s) 767
AsuHPI GGTGA 6 cut(s) 340, 398, 697, 701, 919, 1245
AsuNHI GCTAGC 1 cut(s) 1081
AvaII GGWCC 4 cut(s) 72, 110, 439, 1010
BamHI GGATCC 1 cut(s) 10
BanI GGYRCC 2 cut(s) 381, 862
BarI GAAGNNNNNNTAC 2 cut(s) 740, 772
BbsI GAAGAC 2 cut(s) 493, 1283
Bbv12I GWGCWC 1 cut(s) 1135
BbvI GCAGC 2 cut(s) 1346, 1369
BccI CCATC 3 cut(s) 130, 1295, 1369
BceAI ACGGC 1 cut(s) 21
BciT130I CCWGG 2 cut(s) 187, 437
BcnI CCSGG 1 cut(s) 767
BcoDI GTCTC 2 cut(s) 58, 527
BfaI CTAG 6 cut(s) 284, 449, 995, 1023, 1067, 1082
BfmI CTRYAG 1 cut(s) 1285
BglII AGATCT 2 cut(s) 266, 1033
BisI GCNGC 3 cut(s) 218, 1335, 1383
BlpI GCTNAGC 1 cut(s) 1077
BlsI GCNGC 3 cut(s) 219, 1336, 1384
Bme1390I CCNGG 3 cut(s) 187, 437, 767
Bme18I GGWCC 4 cut(s) 72, 110, 439, 1010
BmgT120I GGNCC 5 cut(s) 72, 110, 439, 1010, 1061
BmiI GGNNCC 4 cut(s) 12, 112, 383, 864
BmrFI CCNGG 3 cut(s) 187, 437, 767
BmrI ACTGGG 1 cut(s) 693
BmsI GCATC 1 cut(s) 958
BmtI GCTAGC 1 cut(s) 1085
BmuI ACTGGG 1 cut(s) 693
BoxI GACNNNNGTC 1 cut(s) 1235
BpiI GAAGAC 2 cut(s) 493, 1283
Bpu10I CCTNAGC 2 cut(s) 6, 1134
Bpu1102I GCTNAGC 1 cut(s) 1077
BpuEI CTTGAG 1 cut(s) 255
BpuMI CCSGG 1 cut(s) 767
BsaI GGTCTC 1 cut(s) 527
BsaJI CCNNGG 3 cut(s) 377, 669, 1013
BsaXI ACNNNNNCTCC 2 cut(s) 340, 370
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 136, 378
Bse1I ACTGG 5 cut(s) 14, 351, 699, 723, 1181
Bse3DI GCAATG 2 cut(s) 1012, 1170
BseBI CCWGG 2 cut(s) 187, 437
BseDI CCNNGG 3 cut(s) 377, 669, 1013
BseGI GGATG 3 cut(s) 775, 922, 1303
BseLI CCNNNNNNNGG 3 cut(s) 20, 136, 378
BseMI GCAATG 2 cut(s) 1012, 1170
BseMII CTCAG 4 cut(s) 69, 970, 1091, 1148
BseNI ACTGG 5 cut(s) 14, 351, 699, 723, 1181
BseRI GAGGAG 4 cut(s) 218, 348, 821, 1323
BseXI GCAGC 2 cut(s) 1346, 1369
BseYI CCCAGC 1 cut(s) 896
Bsh1236I CGCG 1 cut(s) 777
BshFI GGCC 2 cut(s) 259, 1063
BshNI GGYRCC 2 cut(s) 381, 862
BsiHKAI GWGCWC 1 cut(s) 1135
BsiSI CCGG 1 cut(s) 767
BslFI GGGAC 2 cut(s) 96, 1243
BslI CCNNNNNNNGG 3 cut(s) 20, 136, 378
BsmAI GTCTC 2 cut(s) 58, 527
BsmFI GGGAC 2 cut(s) 96, 1243
BsmI GAATGC 1 cut(s) 971
BsnI GGCC 2 cut(s) 259, 1063
Bso31I GGTCTC 1 cut(s) 527
Bsp1286I GDGCHC 1 cut(s) 1135
Bsp143I GATC 9 cut(s) 10, 156, 266, 501, 536, 762, 1033, 1040, 1144
Bsp1720I GCTNAGC 1 cut(s) 1077
BspACI CCGC 3 cut(s) 34, 215, 218
BspANI GGCC 2 cut(s) 259, 1063
BspCNI CTCAG 4 cut(s) 68, 969, 1090, 1147
BspFNI CGCG 1 cut(s) 777
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 4 cut(s) 12, 112, 383, 864
BspOI GCTAGC 1 cut(s) 1085
BspPI GGATC 6 cut(s) 5, 18, 496, 757, 1048, 1152
BspT107I GGYRCC 2 cut(s) 381, 862
BspTNI GGTCTC 1 cut(s) 527
BsrDI GCAATG 2 cut(s) 1012, 1170
BsrI ACTGG 5 cut(s) 14, 351, 699, 723, 1181
BssECI CCNNGG 3 cut(s) 377, 669, 1013
BssMI GATC 9 cut(s) 10, 156, 266, 501, 536, 762, 1033, 1040, 1144
BssT1I CCWWGG 3 cut(s) 377, 669, 1013
Bst2UI CCWGG 2 cut(s) 187, 437
Bst4CI ACNGT 1 cut(s) 1442
Bst6I CTCTTC 4 cut(s) 248, 675, 743, 1131
BstC8I GCNNGC 4 cut(s) 198, 1003, 1083, 1204
BstDEI CTNAG 6 cut(s) 6, 55, 873, 956, 1077, 1134
BstEII GGTNACC 1 cut(s) 431
BstENI CCTNNNNNAGG 1 cut(s) 376
BstF5I GGATG 3 cut(s) 775, 922, 1303
BstFNI CGCG 1 cut(s) 777
BstKTI GATC 9 cut(s) 13, 159, 269, 504, 539, 765, 1036, 1043, 1147
BstMAI GTCTC 2 cut(s) 58, 527
BstMBI GATC 9 cut(s) 10, 156, 266, 501, 536, 762, 1033, 1040, 1144
BstMWI GCNNNNNNNGC 4 cut(s) 42, 223, 1082, 1212
BstNI CCWGG 2 cut(s) 187, 437
BstPAI GACNNNNGTC 1 cut(s) 1235
BstPI GGTNACC 1 cut(s) 431
BstSCI CCNGG 3 cut(s) 185, 435, 765
BstSFI CTRYAG 1 cut(s) 1285
BstUI CGCG 1 cut(s) 777
BstV1I GCAGC 2 cut(s) 1346, 1369
BstV2I GAAGAC 2 cut(s) 493, 1283
BstX2I RGATCY 4 cut(s) 10, 266, 1033, 1040
BstYI RGATCY 4 cut(s) 10, 266, 1033, 1040
BsuRI GGCC 2 cut(s) 259, 1063
BtgZI GCGATG 1 cut(s) 86
BtsCI GGATG 3 cut(s) 775, 922, 1303
BtsI GCAGTG 1 cut(s) 1362
BtsIMutI CAGTG 5 cut(s) 63, 507, 730, 964, 1362
Cac8I GCNNGC 4 cut(s) 198, 1003, 1083, 1204
CaiI CAGNNNCTG 3 cut(s) 20, 428, 1217
CciI TCATGA 1 cut(s) 331
Cfr13I GGNCC 5 cut(s) 72, 110, 439, 1010, 1061
Csp6I GTAC 5 cut(s) 382, 646, 743, 779, 1027
CviAII CATG 8 cut(s) 69, 293, 332, 526, 572, 713, 731, 760
CviQI GTAC 5 cut(s) 382, 646, 743, 779, 1027
DdeI CTNAG 6 cut(s) 6, 55, 873, 956, 1077, 1134
DpnI GATC 9 cut(s) 12, 158, 268, 503, 538, 764, 1035, 1042, 1146
DpnII GATC 9 cut(s) 10, 156, 266, 501, 536, 762, 1033, 1040, 1144
Eam1104I CTCTTC 4 cut(s) 248, 675, 743, 1131
EarI CTCTTC 4 cut(s) 248, 675, 743, 1131
EciI GGCGGA 2 cut(s) 23, 204
Eco130I CCWWGG 3 cut(s) 377, 669, 1013
Eco31I GGTCTC 1 cut(s) 527
Eco47I GGWCC 4 cut(s) 72, 110, 439, 1010
Eco57I CTGAAG 2 cut(s) 651, 767
Eco91I GGTNACC 1 cut(s) 431
EcoNI CCTNNNNNAGG 1 cut(s) 376
EcoO65I GGTNACC 1 cut(s) 431
EcoRII CCWGG 2 cut(s) 185, 435
EcoT14I CCWWGG 3 cut(s) 377, 669, 1013
EcoT22I ATGCAT 2 cut(s) 531, 973
ErhI CCWWGG 3 cut(s) 377, 669, 1013
FaeI CATG 8 cut(s) 72, 296, 335, 529, 575, 716, 734, 763
FalI AAGNNNNNCTT 2 cut(s) 370, 402
FaqI GGGAC 2 cut(s) 96, 1243
FatI CATG 8 cut(s) 68, 292, 331, 525, 571, 712, 730, 759
FauNDI CATATG 1 cut(s) 583
Fnu4HI GCNGC 3 cut(s) 218, 1335, 1383
FokI GGATG 3 cut(s) 782, 909, 1310
Fsp4HI GCNGC 3 cut(s) 218, 1335, 1383
FspBI CTAG 6 cut(s) 284, 449, 995, 1023, 1067, 1082
GluI GCNGC 3 cut(s) 218, 1335, 1383
GsaI CCCAGC 1 cut(s) 900
HaeIII GGCC 2 cut(s) 259, 1063
HapII CCGG 1 cut(s) 767
Hin1II CATG 8 cut(s) 72, 296, 335, 529, 575, 716, 734, 763
HinfI GANTC 6 cut(s) 24, 190, 301, 553, 625, 869
HpaII CCGG 1 cut(s) 767
HphI GGTGA 6 cut(s) 340, 398, 697, 701, 919, 1245
Hpy166II GTNNAC 3 cut(s) 781, 1117, 1362
Hpy188I TCNGA 3 cut(s) 601, 624, 737
Hpy188III TCNNGA 5 cut(s) 250, 332, 629, 847, 1114
Hpy8I GTNNAC 3 cut(s) 781, 1117, 1362
HpyAV CCTTC 5 cut(s) 85, 189, 832, 904, 1001
HpyCH4III ACNGT 1 cut(s) 1442
HpyCH4IV ACGT 1 cut(s) 878
HpyCH4V TGCA 6 cut(s) 68, 314, 529, 581, 971, 1202
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 223, 1082, 1212
HpyF3I CTNAG 6 cut(s) 6, 55, 873, 956, 1077, 1134
HpySE526I ACGT 1 cut(s) 878
Hsp92II CATG 8 cut(s) 72, 296, 335, 529, 575, 716, 734, 763
KpnI GGTACC 1 cut(s) 385
Kzo9I GATC 9 cut(s) 10, 156, 266, 501, 536, 762, 1033, 1040, 1144
LmnI GCTCC 5 cut(s) 50, 139, 231, 1019, 1459
Lsp1109I GCAGC 2 cut(s) 1346, 1369
LweI GCATC 1 cut(s) 958
MaeI CTAG 6 cut(s) 284, 449, 995, 1023, 1067, 1082
MaeII ACGT 1 cut(s) 878
MaeIII GTNAC 4 cut(s) 431, 562, 664, 725
MalI GATC 9 cut(s) 12, 158, 268, 503, 538, 764, 1035, 1042, 1146
MboI GATC 9 cut(s) 10, 156, 266, 501, 536, 762, 1033, 1040, 1144
MboII GAAGA 9 cut(s) 235, 337, 498, 644, 685, 692, 760, 1118, 1288
MfeI CAATTG 1 cut(s) 1355
MflI RGATCY 4 cut(s) 10, 266, 1033, 1040
MhlI GDGCHC 1 cut(s) 1135
MluCI AATT 4 cut(s) 234, 364, 394, 1355
MluI ACGCGT 1 cut(s) 775
MlyI GAGTC 2 cut(s) 295, 634
MmeI TCCRAC 2 cut(s) 715, 1137
Mph1103I ATGCAT 2 cut(s) 531, 973
MroXI GAANNNNTTC 2 cut(s) 618, 842
MseI TTAA 1 cut(s) 792
MslI CAYNNNNRTG 1 cut(s) 105
MspI CCGG 1 cut(s) 767
MspR9I CCNGG 3 cut(s) 187, 437, 767
MunI CAATTG 1 cut(s) 1355
Mva1269I GAATGC 1 cut(s) 971
MvaI CCWGG 2 cut(s) 187, 437
MvnI CGCG 1 cut(s) 777
MwoI GCNNNNNNNGC 4 cut(s) 42, 223, 1082, 1212
NciI CCSGG 1 cut(s) 767
NdeI CATATG 1 cut(s) 583
NdeII GATC 9 cut(s) 10, 156, 266, 501, 536, 762, 1033, 1040, 1144
NheI GCTAGC 1 cut(s) 1081
NlaIII CATG 8 cut(s) 72, 296, 335, 529, 575, 716, 734, 763
NlaIV GGNNCC 4 cut(s) 12, 112, 383, 864
NmuCI GTSAC 1 cut(s) 725
NsiI ATGCAT 2 cut(s) 531, 973
PagI TCATGA 1 cut(s) 331
PctI GAATGC 1 cut(s) 971
PdmI GAANNNNTTC 2 cut(s) 618, 842
PfeI GAWTC 4 cut(s) 24, 190, 553, 869
PflFI GACNNNGTC 2 cut(s) 731, 827
PflMI CCANNNNNTGG 2 cut(s) 20, 136
PfoI TCCNGGA 1 cut(s) 765
PkrI GCNGC 3 cut(s) 219, 1336, 1384
PleI GAGTC 2 cut(s) 295, 633
PpsI GAGTC 2 cut(s) 295, 633
PshAI GACNNNNGTC 1 cut(s) 1235
Psp6I CCWGG 2 cut(s) 185, 435
PspEI GGTNACC 1 cut(s) 431
PspFI CCCAGC 1 cut(s) 896
PspGI CCWGG 2 cut(s) 185, 435
PspN4I GGNNCC 4 cut(s) 12, 112, 383, 864
PspPI GGNCC 5 cut(s) 72, 110, 439, 1010, 1061
PstNI CAGNNNCTG 3 cut(s) 20, 428, 1217
PsuI RGATCY 4 cut(s) 10, 266, 1033, 1040
PsyI GACNNNGTC 2 cut(s) 731, 827
RsaI GTAC 5 cut(s) 383, 647, 744, 780, 1028
RsaNI GTAC 5 cut(s) 382, 646, 743, 779, 1027
RseI CAYNNNNRTG 1 cut(s) 105
SaqAI TTAA 1 cut(s) 792
SatI GCNGC 3 cut(s) 218, 1335, 1383
Sau3AI GATC 9 cut(s) 10, 156, 266, 501, 536, 762, 1033, 1040, 1144
Sau96I GGNCC 5 cut(s) 72, 110, 439, 1010, 1061
SchI GAGTC 2 cut(s) 295, 634
ScrFI CCNGG 3 cut(s) 187, 437, 767
SduI GDGCHC 1 cut(s) 1135
SfaNI GCATC 1 cut(s) 958
SfcI CTRYAG 1 cut(s) 1285
SinI GGWCC 4 cut(s) 72, 110, 439, 1010
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 270
SmoI CTYRAG 1 cut(s) 270
Sse9I AATT 4 cut(s) 234, 364, 394, 1355
SsiI CCGC 3 cut(s) 34, 215, 218
SspMI CTAG 6 cut(s) 284, 449, 995, 1023, 1067, 1082
StyD4I CCNGG 3 cut(s) 185, 435, 765
StyI CCWWGG 3 cut(s) 377, 669, 1013
TaaI ACNGT 1 cut(s) 1442
TaiI ACGT 1 cut(s) 881
TaqI TCGA 3 cut(s) 535, 678, 936
TasI AATT 4 cut(s) 234, 364, 394, 1355
TatI WGTACW 1 cut(s) 742
TauI GCSGC 1 cut(s) 220
TfiI GAWTC 4 cut(s) 24, 190, 553, 869
Tru1I TTAA 1 cut(s) 792
Tru9I TTAA 1 cut(s) 792
TscAI CASTG 5 cut(s) 63, 514, 730, 964, 1369
TseFI GTSAC 1 cut(s) 725
TseI GCWGC 2 cut(s) 1334, 1382
Tsp45I GTSAC 1 cut(s) 725
TspDTI ATGAA 6 cut(s) 67, 76, 348, 600, 786, 1404
TspRI CASTG 5 cut(s) 63, 514, 730, 964, 1369
Tth111I GACNNNGTC 2 cut(s) 731, 827
Van91I CCANNNNNTGG 2 cut(s) 20, 136
VpaK11BI GGWCC 4 cut(s) 72, 110, 439, 1010
XagI CCTNNNNNAGG 1 cut(s) 376
XapI RAATTY 1 cut(s) 364
XmnI GAANNNNTTC 2 cut(s) 618, 842
XspI CTAG 6 cut(s) 284, 449, 995, 1023, 1067, 1082
Zsp2I ATGCAT 2 cut(s) 531, 973
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.