Rh5AG439500

Glycosyltransferase Family 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0016183
Physical Location & Seq
Reverse (-)
75556179 .. 75559352
3174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG439500.1

Sequence Viewer

Length: 1383 bp
ATGGCCCTAGACGGTATAGTCAATGTGAACTCACTTTTCTCATTTGCTCTCTTCATAGGCCTCACTTGGTACCCTGCCATCGACACCAACTCCATGCTCCTCGGCTCCAACACGGCCTGCGCTGCCGGTACCGATACAGCGGAGGGACTCATCTCATTCCACGTGTACTCTTTCAGCTGCTTTCTCTTCTCCAGCCTCATTGCCTTGGCTCTCAAGCAAGCCATCAAGATAAGCCTAAGTGGTTCTAGTGGAAATGGTGGCTCGGATTCCGAGTTGCTTGGTGCCAACATGGGCCATGTTAACCAGAAGCAAAGCCAGATCAGTGAACTTCTTTCATTCCCTTCTGCCTGGAATCAGCTCGCTTTTTCCTCAAATCCGCCCCCAAAACTCCTCAAAATTGCTCTATTCGTCAAGAAATGGCCTCATAGATCTCAAGCAGGAGGGCTTGAACGCCATGCTTTGACCCTCCACCTTGCACTTGCCAAAAGAGGTCATGAACTTCACATCTTCACCACTTCTCCTTCAAATTCCTCCTTCCCAAGGTACCCATTGAACAATTTATGCTTTCACCTCTCAAAACCAACAGCTTCTGGGTATCTGGACCAAGCTCTAGTTTGGAAGCTATTTCAAACTCAAAACTCAACTGGAAGACCTTTTGATGTGATACACACAGAAAGTGTCGGTCTCTTGCATACTCGATCACGCAATCAGACAAATCTGGCTGTTACTTGGCATGGGATTGCATATGAAACTATCCATTCTGACATCATACAAGAACTTCTTCGGAGCCCTGAAGAACCACAGGGGTATGCATTGGCTGAAAGAGTTACCAAGGTTGTCGAAGAGGTAAGGTTCTTCCCCAGTTACGCTCACCATGTTGCTACCAGTGACCATGTCGGCGATGTACTTAAGAGGATTTACATGATCCCAGATGAACGTGTACATGTTATTCTTAATGGTGTTGATGAGGAGGTTTTCAAGCCAGACATTGTCAAAGGGAAGGATTTCAAGAAAAAGTTTGGGGTGCCTGAATCTAAGACGTTGGTTTTAGGAATGGCTGGGAGGTTGGTGAAGGATAAAGGACATCCGCTGATGTTTGAGGCTTTGAAACAAATGCTCAGTGAAAATGAAGCATTCAGGCAGAGTGTTGTCGTTCTAGTTGCTGGCAATGGTCCTTGGGGAGCTAGGTACAGAGATCTTGGATCTAATGTACTTGTTTTAGGGCCACTAGAACAAGCTCAGCTTGCTGACTTCTACAATGCAATAGATATATTCGTGAACCCAACCCTTCGTGCTCAGGGATTGGATCATACTTTGTTGGAAGCAATGCTCTCTGGATATGTGAAGATAATAAGGAAGATGCATCTGAAGAAATGGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_1_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

460

Amino Acids

50.91

Weight (kDa)

8.75

Isoelectric Point (pI)

32.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_4 PF13439 147 - 324 2.2e-18 Glycosyltransferase Family 4
Glyco_trans_4_4 PF13579 147 - 320 1.5e-09 Glycosyl transferase 4-like domain
Glycos_transf_1 PF00534 338 - 450 1.3e-09 Glycosyl transferases group 1
Glyco_trans_1_4 PF13692 349 - 448 1.6e-11 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59070
fragaria_vesca FvH4_3g37200
malus_domestica MD03G1083000.v1.1
prunus_persica Prupe.6G067300_v2.0.a1
pyrus_communis pycom03g06600
rosa_chinensis RchiOBHm_Chr5g0066941
rosa_laevigata RLG00000035895
rosa_multiflora Rmu_sc0008378.1_g000007
rosa_roxburghii Rroxscaffold_1G00014180
rosa_rugosa Rorug05G0379900
rosa_samantha Rh5AG439500 Rh5BG456600 Rh5CG478700 Rh5DG471400
rosa_wichuraiana Rw5G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 17
Acc65I GGTACC 3 cut(s) 69, 128, 543
AccB1I GGYRCC 5 cut(s) 69, 128, 281, 543, 1024
AciI CCGC 3 cut(s) 140, 377, 1088
AclWI GGATC 3 cut(s) 919, 1210, 1314
AcsI RAATTY 1 cut(s) 526
AcuI CTGAAG 1 cut(s) 813
AcvI CACGTG 1 cut(s) 163
AfaI GTAC 8 cut(s) 71, 130, 167, 545, 906, 942, 1190, 1212
AfiI CCNNNNNNNGG 1 cut(s) 540
AflII CTTAAG 1 cut(s) 908
AflIII ACRYGT 3 cut(s) 162, 937, 943
AgsI TTSAA 7 cut(s) 449, 525, 553, 629, 979, 1009, 1108
AjnI CCWGG 1 cut(s) 347
AluBI AGCT 8 cut(s) 177, 358, 587, 608, 622, 1184, 1238, 1243
AluI AGCT 8 cut(s) 177, 358, 587, 608, 622, 1184, 1238, 1243
Alw21I GWGCWC 1 cut(s) 1297
Alw26I GTCTC 1 cut(s) 689
AlwI GGATC 3 cut(s) 919, 1210, 1314
AlwNI CAGNNNCTG 1 cut(s) 590
AoxI GGCC 6 cut(s) 3, 58, 114, 292, 419, 1223
ApeKI GCWGC 2 cut(s) 122, 177
ApoI RAATTY 1 cut(s) 526
Asp700I GAANNNNTTC 2 cut(s) 780, 1004
Asp718I GGTACC 3 cut(s) 69, 128, 543
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 5 cut(s) 4, 292, 601, 1172, 1223
AsuHPI GGTGA 4 cut(s) 502, 560, 863, 1081
AvaII GGWCC 2 cut(s) 601, 1172
BanI GGYRCC 5 cut(s) 69, 128, 281, 543, 1024
BanII GRGCYC 1 cut(s) 791
BbrPI CACGTG 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 655
Bbv12I GWGCWC 1 cut(s) 1297
BbvI GCAGC 2 cut(s) 109, 164
BccI CCATC 2 cut(s) 86, 230
BceAI ACGGC 1 cut(s) 129
BciT130I CCWGG 1 cut(s) 349
BcoDI GTCTC 1 cut(s) 689
BfaI CTAG 6 cut(s) 8, 246, 611, 1157, 1185, 1229
BfrI CTTAAG 1 cut(s) 908
BglII AGATCT 2 cut(s) 428, 1195
BisI GCNGC 2 cut(s) 123, 178
BlpI GCTNAGC 1 cut(s) 1239
BlsI GCNGC 2 cut(s) 124, 179
Bme1390I CCNGG 1 cut(s) 349
Bme18I GGWCC 2 cut(s) 601, 1172
BmgT120I GGNCC 5 cut(s) 4, 292, 601, 1172, 1223
BmiI GGNNCC 7 cut(s) 71, 106, 130, 283, 545, 788, 1026
BmrFI CCNGG 1 cut(s) 349
BmrI ACTGGG 1 cut(s) 855
BmsI GCATC 2 cut(s) 1350, 1372
BmuI ACTGGG 1 cut(s) 855
BpiI GAAGAC 1 cut(s) 655
BpmI CTGGAG 1 cut(s) 175
Bpu10I CCTNAGC 1 cut(s) 1296
Bpu1102I GCTNAGC 1 cut(s) 1239
BpuEI CTTGAG 2 cut(s) 197, 417
BsaAI YACGTR 1 cut(s) 163
BsaI GGTCTC 1 cut(s) 689
BsaJI CCNNGG 5 cut(s) 100, 204, 539, 831, 1175
BsaXI ACNNNNNCTCC 4 cut(s) 74, 104, 502, 532
Bsc4I CCNNNNNNNGG 1 cut(s) 540
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 3 cut(s) 649, 861, 885
Bse3DI GCAATG 3 cut(s) 198, 1174, 1332
BseBI CCWGG 1 cut(s) 349
BseDI CCNNGG 5 cut(s) 100, 204, 539, 831, 1175
BseGI GGATG 1 cut(s) 1084
BseLI CCNNNNNNNGG 1 cut(s) 540
BseMI GCAATG 3 cut(s) 198, 1174, 1332
BseMII CTCAG 3 cut(s) 1132, 1253, 1310
BseNI ACTGG 3 cut(s) 649, 861, 885
BseRI GAGGAG 3 cut(s) 89, 380, 983
BseXI GCAGC 2 cut(s) 109, 164
BseYI CCCAGC 1 cut(s) 1058
BshFI GGCC 6 cut(s) 5, 60, 116, 294, 421, 1225
BshNI GGYRCC 5 cut(s) 69, 128, 281, 543, 1024
BsiHKAI GWGCWC 1 cut(s) 1297
BsiSI CCGG 1 cut(s) 126
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 1 cut(s) 540
BsmAI GTCTC 1 cut(s) 689
BsmFI GGGAC 1 cut(s) 159
BsmI GAATGC 1 cut(s) 1133
BsnI GGCC 6 cut(s) 5, 60, 116, 294, 421, 1225
Bso31I GGTCTC 1 cut(s) 689
Bsp1286I GDGCHC 2 cut(s) 791, 1297
Bsp1407I TGTACA 1 cut(s) 940
Bsp143I GATC 8 cut(s) 318, 428, 698, 924, 1195, 1202, 1306, 1377
Bsp1720I GCTNAGC 1 cut(s) 1239
BspACI CCGC 3 cut(s) 140, 377, 1088
BspANI GGCC 6 cut(s) 5, 60, 116, 294, 421, 1225
BspCNI CTCAG 3 cut(s) 1131, 1252, 1309
BspHI TCATGA 1 cut(s) 493
BspLI GGNNCC 7 cut(s) 71, 106, 130, 283, 545, 788, 1026
BspPI GGATC 3 cut(s) 919, 1210, 1314
BspT107I GGYRCC 5 cut(s) 69, 128, 281, 543, 1024
BspTI CTTAAG 1 cut(s) 908
BspTNI GGTCTC 1 cut(s) 689
BsrDI GCAATG 3 cut(s) 198, 1174, 1332
BsrFI RCCGGY 1 cut(s) 125
BsrGI TGTACA 1 cut(s) 940
BsrI ACTGG 3 cut(s) 649, 861, 885
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 5 cut(s) 100, 204, 539, 831, 1175
BssMI GATC 8 cut(s) 318, 428, 698, 924, 1195, 1202, 1306, 1377
BssT1I CCWWGG 4 cut(s) 204, 539, 831, 1175
Bst2UI CCWGG 1 cut(s) 349
Bst4CI ACNGT 1 cut(s) 14
Bst6I CTCTTC 3 cut(s) 56, 191, 837
BstAFI CTTAAG 1 cut(s) 908
BstAUI TGTACA 1 cut(s) 940
BstBAI YACGTR 1 cut(s) 163
BstC8I GCNNGC 5 cut(s) 118, 219, 360, 1165, 1245
BstDEI CTNAG 5 cut(s) 236, 1035, 1118, 1239, 1296
BstENI CCTNNNNNAGG 1 cut(s) 538
BstF5I GGATG 1 cut(s) 1084
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 8 cut(s) 321, 431, 701, 927, 1198, 1205, 1309, 1380
BstMAI GTCTC 1 cut(s) 689
BstMBI GATC 8 cut(s) 318, 428, 698, 924, 1195, 1202, 1306, 1377
BstMWI GCNNNNNNNGC 2 cut(s) 122, 1244
BstNI CCWGG 1 cut(s) 349
BstNSI RCATGY 1 cut(s) 947
BstSCI CCNGG 1 cut(s) 347
BstV1I GCAGC 2 cut(s) 109, 164
BstV2I GAAGAC 1 cut(s) 655
BstX2I RGATCY 4 cut(s) 428, 1195, 1202, 1377
BstYI RGATCY 4 cut(s) 428, 1195, 1202, 1377
BsuRI GGCC 6 cut(s) 5, 60, 116, 294, 421, 1225
BtgZI GCGATG 1 cut(s) 915
BtsCI GGATG 1 cut(s) 1084
BtsIMutI CAGTG 3 cut(s) 328, 892, 1126
Cac8I GCNNGC 5 cut(s) 118, 219, 360, 1165, 1245
CaiI CAGNNNCTG 1 cut(s) 590
CciI TCATGA 1 cut(s) 493
CfoI GCGC 1 cut(s) 122
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 5 cut(s) 4, 292, 601, 1172, 1223
Csp6I GTAC 8 cut(s) 70, 129, 166, 544, 905, 941, 1189, 1211
CviQI GTAC 8 cut(s) 70, 129, 166, 544, 905, 941, 1189, 1211
DdeI CTNAG 5 cut(s) 236, 1035, 1118, 1239, 1296
DpnI GATC 8 cut(s) 320, 430, 700, 926, 1197, 1204, 1308, 1379
DpnII GATC 8 cut(s) 318, 428, 698, 924, 1195, 1202, 1306, 1377
DrdI GACNNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 17
Eam1104I CTCTTC 3 cut(s) 56, 191, 837
EarI CTCTTC 3 cut(s) 56, 191, 837
EciI GGCGGA 1 cut(s) 366
Eco130I CCWWGG 4 cut(s) 204, 539, 831, 1175
Eco147I AGGCCT 1 cut(s) 60
Eco24I GRGCYC 1 cut(s) 791
Eco31I GGTCTC 1 cut(s) 689
Eco47I GGWCC 2 cut(s) 601, 1172
Eco57I CTGAAG 1 cut(s) 813
Eco72I CACGTG 1 cut(s) 163
EcoNI CCTNNNNNAGG 1 cut(s) 538
EcoRII CCWGG 1 cut(s) 347
EcoT14I CCWWGG 4 cut(s) 204, 539, 831, 1175
EcoT22I ATGCAT 2 cut(s) 814, 1365
EcoT38I GRGCYC 1 cut(s) 791
ErhI CCWWGG 4 cut(s) 204, 539, 831, 1175
FalI AAGNNNNNCTT 4 cut(s) 765, 797, 1227, 1259
FaqI GGGAC 1 cut(s) 159
FauNDI CATATG 1 cut(s) 745
Fnu4HI GCNGC 2 cut(s) 123, 178
FokI GGATG 1 cut(s) 1071
FriOI GRGCYC 1 cut(s) 791
Fsp4HI GCNGC 2 cut(s) 123, 178
FspBI CTAG 6 cut(s) 8, 246, 611, 1157, 1185, 1229
GlaI GCGC 1 cut(s) 121
GluI GCNGC 2 cut(s) 123, 178
GsaI CCCAGC 1 cut(s) 1062
GsuI CTGGAG 1 cut(s) 175
HaeIII GGCC 6 cut(s) 5, 60, 116, 294, 421, 1225
HapII CCGG 1 cut(s) 126
HhaI GCGC 1 cut(s) 122
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 4 cut(s) 147, 266, 352, 1031
HpaI GTTAAC 1 cut(s) 301
HpaII CCGG 1 cut(s) 126
HphI GGTGA 4 cut(s) 502, 560, 863, 1081
Hpy166II GTNNAC 6 cut(s) 28, 166, 301, 326, 941, 1279
Hpy188I TCNGA 7 cut(s) 265, 271, 711, 763, 786, 1368, 1382
Hpy188III TCNNGA 7 cut(s) 226, 412, 494, 599, 1009, 1276, 1335
Hpy8I GTNNAC 6 cut(s) 28, 166, 301, 326, 941, 1279
HpyAV CCTTC 6 cut(s) 351, 531, 544, 994, 1066, 1298
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4IV ACGT 3 cut(s) 162, 937, 1040
HpyCH4V TGCA 6 cut(s) 476, 691, 743, 812, 1262, 1363
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 1244
HpyF3I CTNAG 5 cut(s) 236, 1035, 1118, 1239, 1296
HpySE526I ACGT 3 cut(s) 162, 937, 1040
HspAI GCGC 1 cut(s) 120
KpnI GGTACC 3 cut(s) 73, 132, 547
KspAI GTTAAC 1 cut(s) 301
Kzo9I GATC 8 cut(s) 318, 428, 698, 924, 1195, 1202, 1306, 1377
LmnI GCTCC 4 cut(s) 102, 110, 786, 1181
Lsp1109I GCAGC 2 cut(s) 109, 164
LweI GCATC 2 cut(s) 1350, 1372
MaeI CTAG 6 cut(s) 8, 246, 611, 1157, 1185, 1229
MaeII ACGT 3 cut(s) 162, 937, 1040
MaeIII GTNAC 4 cut(s) 724, 826, 863, 887
MalI GATC 8 cut(s) 320, 430, 700, 926, 1197, 1204, 1308, 1379
MboI GATC 8 cut(s) 318, 428, 698, 924, 1195, 1202, 1306, 1377
MflI RGATCY 4 cut(s) 428, 1195, 1202, 1377
MhlI GDGCHC 2 cut(s) 791, 1297
MluCI AATT 3 cut(s) 396, 526, 556
MlyI GAGTC 1 cut(s) 141
MmeI TCCRAC 2 cut(s) 132, 1299
Mph1103I ATGCAT 2 cut(s) 814, 1365
MroXI GAANNNNTTC 2 cut(s) 780, 1004
MseI TTAA 3 cut(s) 300, 909, 954
MspA1I CMGCKG 3 cut(s) 140, 177, 1090
MspCI CTTAAG 1 cut(s) 908
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 349
Mva1269I GAATGC 1 cut(s) 1133
MvaI CCWGG 1 cut(s) 349
MwoI GCNNNNNNNGC 2 cut(s) 122, 1244
NdeI CATATG 1 cut(s) 745
NdeII GATC 8 cut(s) 318, 428, 698, 924, 1195, 1202, 1306, 1377
NlaIV GGNNCC 7 cut(s) 71, 106, 130, 283, 545, 788, 1026
NmeAIII GCCGAG 1 cut(s) 81
NmuCI GTSAC 1 cut(s) 887
NsiI ATGCAT 2 cut(s) 814, 1365
NspI RCATGY 1 cut(s) 947
PagI TCATGA 1 cut(s) 493
PceI AGGCCT 1 cut(s) 60
PciI ACATGT 1 cut(s) 943
PctI GAATGC 1 cut(s) 1133
PdmI GAANNNNTTC 2 cut(s) 780, 1004
PfeI GAWTC 3 cut(s) 266, 352, 1031
PflFI GACNNNGTC 2 cut(s) 893, 989
PkrI GCNGC 2 cut(s) 124, 179
PleI GAGTC 1 cut(s) 141
PmaCI CACGTG 1 cut(s) 163
PmlI CACGTG 1 cut(s) 163
PpsI GAGTC 1 cut(s) 141
Ppu21I YACGTR 1 cut(s) 163
PscI ACATGT 1 cut(s) 943
Psp6I CCWGG 1 cut(s) 347
PspCI CACGTG 1 cut(s) 163
PspFI CCCAGC 1 cut(s) 1058
PspGI CCWGG 1 cut(s) 347
PspN4I GGNNCC 7 cut(s) 71, 106, 130, 283, 545, 788, 1026
PspPI GGNCC 5 cut(s) 4, 292, 601, 1172, 1223
PstNI CAGNNNCTG 1 cut(s) 590
PsuI RGATCY 4 cut(s) 428, 1195, 1202, 1377
PsyI GACNNNGTC 2 cut(s) 893, 989
PvuII CAGCTG 1 cut(s) 177
RsaI GTAC 8 cut(s) 71, 130, 167, 545, 906, 942, 1190, 1212
RsaNI GTAC 8 cut(s) 70, 129, 166, 544, 905, 941, 1189, 1211
SaqAI TTAA 3 cut(s) 300, 909, 954
SatI GCNGC 2 cut(s) 123, 178
Sau3AI GATC 8 cut(s) 318, 428, 698, 924, 1195, 1202, 1306, 1377
Sau96I GGNCC 5 cut(s) 4, 292, 601, 1172, 1223
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 349
SduI GDGCHC 2 cut(s) 791, 1297
SfaNI GCATC 2 cut(s) 1350, 1372
SinI GGWCC 2 cut(s) 601, 1172
SmlI CTYRAG 3 cut(s) 212, 432, 908
SmoI CTYRAG 3 cut(s) 212, 432, 908
Sse9I AATT 3 cut(s) 396, 526, 556
SseBI AGGCCT 1 cut(s) 60
SsiI CCGC 3 cut(s) 140, 377, 1088
SspMI CTAG 6 cut(s) 8, 246, 611, 1157, 1185, 1229
StuI AGGCCT 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 347
StyI CCWWGG 4 cut(s) 204, 539, 831, 1175
TaaI ACNGT 1 cut(s) 14
TaiI ACGT 3 cut(s) 165, 940, 1043
TaqI TCGA 3 cut(s) 81, 697, 840
TaqII GACCGA 1 cut(s) 671
TasI AATT 3 cut(s) 396, 526, 556
TatI WGTACW 4 cut(s) 165, 904, 940, 1210
TfiI GAWTC 3 cut(s) 266, 352, 1031
Tru1I TTAA 3 cut(s) 300, 909, 954
Tru9I TTAA 3 cut(s) 300, 909, 954
TscAI CASTG 3 cut(s) 328, 892, 1126
TseFI GTSAC 1 cut(s) 887
TseI GCWGC 2 cut(s) 122, 177
Tsp45I GTSAC 1 cut(s) 887
TspDTI ATGAA 6 cut(s) 43, 324, 510, 762, 948, 1143
TspRI CASTG 3 cut(s) 328, 892, 1126
Tth111I GACNNNGTC 2 cut(s) 893, 989
Vha464I CTTAAG 1 cut(s) 908
VpaK11BI GGWCC 2 cut(s) 601, 1172
XagI CCTNNNNNAGG 1 cut(s) 538
XapI RAATTY 1 cut(s) 526
XceI RCATGY 1 cut(s) 947
XmnI GAANNNNTTC 2 cut(s) 780, 1004
XspI CTAG 6 cut(s) 8, 246, 611, 1157, 1185, 1229
Zsp2I ATGCAT 2 cut(s) 814, 1365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.