Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0016183

Physical Location & Seq

Genomic Coordinates Reverse (-)

66733539 .. 66735005

Gene Structure 1467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG478700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCAAAGGATCCAGTTGCTGGATTTAGCTTCCGCCGTCTTTGCTCTATTGTCTCGACAAATCTGGCTGTTACTTGGCATGGGATTGCATATGAAACTATCCATTCTGACATCATACAAGAACTTCTTCGGAGCCCCGAAGAACCACAGGGGTATGCATTGGCTGAAAGAGTTACCAAGGTTGTCGAAGAGGTGAGGTTCTTCCCCAGTTACGCTCACCATGTTGCTACCAGTGACCATGTCGGCGATGTACTTAAGAGGATTTACATGATCCCAGATGAACGTGTACATGTTATTCTTAATGGTGTTGATGAGGAGGTTTTCAAGCCAGACATTGTCAAAGGGAAGGATTTCAAGAAAAAGTTTGGGGTGCCTGAATCCAAGACGTTGGTTTTAGGAATGGCTGGGAGGTTGGTGAAGGATAAAGGACATCCGCTGATGTTTGAGGCTTTGAAACAAATGCTCAGTGAAAATGAAGCATTCAGGCAGAGTGTTGTCGTTCTAGTTGCTGGCAATGGTCCTTGGGGAGCTAGGTACAGAGATCTTGGATCTAATGTACTTGTTTTAGGGCCACTAGAACAAGCTCAGCTTGCTGACTTCTACAATGCAATAGATATATTCGTGAACCCAACCCTTCGTGCTCAGGGATTGGATCATACTTTGTTGGAAGCAATGCTCTCTGGTAAGCCAGTACTGGCAACAAGACTTGCAAGCATTACAGGCTCTGTGGTTGTTGGAAGAGAAGTCGGTTATACATTTTCACCGACAATAGCTTCATTAAAGAAGACCCTCTATAGAGTTTGGGATGATGGCAGAGGAGATCTAAAGCAGAAAGGTCAGGCAGCAAAGCAAAGAGGCTTGCAATTGTTCACTGCTACCAAAATGGCAGCTGCTTATGAAAGGCTATTCCTTTGTTTATCCAATGACGAAAAAAATGGGGAAAATTTCTGTCAATATCAAATTCCATTACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_trans_1_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

324

Amino Acids

36.05

Weight (kDa)

8.29

Isoelectric Point (pI)

25.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycos_transf_1	PF00534	119 - 283	5.2e-16	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	131 - 268	7e-17	Glycosyl transferases group 1
Glyco_trans_1_2	PF13524	166 - 298	4.8e-06	Glycosyl transferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59070
fragaria_vesca	FvH4_3g37200
malus_domestica	MD03G1083000.v1.1
prunus_persica	Prupe.6G067300_v2.0.a1
pyrus_communis	pycom03g06600
rosa_chinensis	RchiOBHm_Chr5g0066941
rosa_laevigata	RLG00000035895
rosa_multiflora	Rmu_sc0008378.1_g000007
rosa_roxburghii	Rroxscaffold_1G00014180
rosa_rugosa	Rorug05G0379900
rosa_samantha	Rh5AG439500 Rh5BG456600 Rh5CG478700 Rh5DG471400
rosa_wichuraiana	Rw5G041110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	370
AccB7I	CCANNNNNTGG	1 cut(s)	20
AciI	CCGC	2 cut(s)	34, 434
AclWI	GGATC	5 cut(s)	5, 18, 265, 556, 660
AcsI	RAATTY	2 cut(s)	943, 960
AfaI	GTAC	5 cut(s)	252, 288, 536, 558, 693
AfiI	CCNNNNNNNGG	1 cut(s)	20
AflII	CTTAAG	1 cut(s)	254
AflIII	ACRYGT	2 cut(s)	283, 289
AgsI	TTSAA	3 cut(s)	325, 355, 454
AluBI	AGCT	6 cut(s)	30, 530, 584, 589, 773, 890
AluI	AGCT	6 cut(s)	30, 530, 584, 589, 773, 890
Alw21I	GWGCWC	1 cut(s)	643
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	5 cut(s)	5, 18, 265, 556, 660
AlwNI	CAGNNNCTG	2 cut(s)	20, 725
AoxI	GGCC	1 cut(s)	569
ApeKI	GCWGC	3 cut(s)	842, 887, 890
ApoI	RAATTY	2 cut(s)	943, 960
Asp700I	GAANNNNTTC	2 cut(s)	126, 350
AspS9I	GGNCC	2 cut(s)	518, 569
AsuHPI	GGTGA	4 cut(s)	205, 209, 427, 753
AvaII	GGWCC	1 cut(s)	518
BamHI	GGATCC	1 cut(s)	10
BanI	GGYRCC	1 cut(s)	370
BanII	GRGCYC	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	791
Bbv12I	GWGCWC	1 cut(s)	643
BbvI	GCAGC	3 cut(s)	854, 877, 899
BccI	CCATC	1 cut(s)	803
BceAI	ACGGC	1 cut(s)	21
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	3 cut(s)	503, 531, 575
BfmI	CTRYAG	1 cut(s)	793
BfrI	CTTAAG	1 cut(s)	254
BglII	AGATCT	2 cut(s)	541, 820
BisI	GCNGC	3 cut(s)	843, 888, 891
BlpI	GCTNAGC	1 cut(s)	585
BlsI	GCNGC	3 cut(s)	844, 889, 892
BmcAI	AGTACT	1 cut(s)	693
Bme18I	GGWCC	1 cut(s)	518
BmgT120I	GGNCC	2 cut(s)	518, 569
BmiI	GGNNCC	3 cut(s)	12, 134, 372
BmrI	ACTGGG	1 cut(s)	201
BmuI	ACTGGG	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	791
Bpu10I	CCTNAGC	1 cut(s)	642
Bpu1102I	GCTNAGC	1 cut(s)	585
BsaJI	CCNNGG	2 cut(s)	177, 521
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse1I	ACTGG	5 cut(s)	14, 207, 231, 689, 699
Bse3DI	GCAATG	2 cut(s)	520, 678
BseDI	CCNNGG	2 cut(s)	177, 521
BseGI	GGATG	2 cut(s)	430, 811
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMI	GCAATG	2 cut(s)	520, 678
BseMII	CTCAG	3 cut(s)	478, 599, 656
BseNI	ACTGG	5 cut(s)	14, 207, 231, 689, 699
BseRI	GAGGAG	2 cut(s)	329, 831
BseXI	GCAGC	3 cut(s)	854, 877, 899
BseYI	CCCAGC	1 cut(s)	404
BshFI	GGCC	1 cut(s)	571
BshNI	GGYRCC	1 cut(s)	370
BsiHKAI	GWGCWC	1 cut(s)	643
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	479
BsnI	GGCC	1 cut(s)	571
Bsp1286I	GDGCHC	2 cut(s)	137, 643
Bsp1407I	TGTACA	1 cut(s)	286
Bsp143I	GATC	6 cut(s)	10, 270, 541, 548, 652, 820
Bsp1720I	GCTNAGC	1 cut(s)	585
BspACI	CCGC	2 cut(s)	34, 434
BspANI	GGCC	1 cut(s)	571
BspCNI	CTCAG	3 cut(s)	477, 598, 655
BspLI	GGNNCC	3 cut(s)	12, 134, 372
BspPI	GGATC	5 cut(s)	5, 18, 265, 556, 660
BspT107I	GGYRCC	1 cut(s)	370
BspTI	CTTAAG	1 cut(s)	254
BsrDI	GCAATG	2 cut(s)	520, 678
BsrGI	TGTACA	1 cut(s)	286
BsrI	ACTGG	5 cut(s)	14, 207, 231, 689, 699
BssECI	CCNNGG	2 cut(s)	177, 521
BssMI	GATC	6 cut(s)	10, 270, 541, 548, 652, 820
BssT1I	CCWWGG	2 cut(s)	177, 521
Bst6I	CTCTTC	2 cut(s)	183, 733
BstAFI	CTTAAG	1 cut(s)	254
BstAUI	TGTACA	1 cut(s)	286
BstC8I	GCNNGC	4 cut(s)	511, 591, 712, 860
BstDEI	CTNAG	3 cut(s)	464, 585, 642
BstF5I	GGATG	2 cut(s)	430, 811
BstKTI	GATC	6 cut(s)	13, 273, 544, 551, 655, 823
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	6 cut(s)	10, 270, 541, 548, 652, 820
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 590, 720
BstNSI	RCATGY	1 cut(s)	293
BstSFI	CTRYAG	1 cut(s)	793
BstV1I	GCAGC	3 cut(s)	854, 877, 899
BstV2I	GAAGAC	1 cut(s)	791
BstX2I	RGATCY	4 cut(s)	10, 541, 548, 820
BstXI	CCANNNNNNTGG	1 cut(s)	388
BstYI	RGATCY	4 cut(s)	10, 541, 548, 820
BsuRI	GGCC	1 cut(s)	571
BtgZI	GCGATG	1 cut(s)	261
BtsCI	GGATG	2 cut(s)	430, 811
BtsI	GCAGTG	1 cut(s)	870
BtsIMutI	CAGTG	3 cut(s)	238, 472, 870
Cac8I	GCNNGC	4 cut(s)	511, 591, 712, 860
CaiI	CAGNNNCTG	2 cut(s)	20, 725
Cfr13I	GGNCC	2 cut(s)	518, 569
Csp6I	GTAC	5 cut(s)	251, 287, 535, 557, 692
CviAII	CATG	5 cut(s)	80, 221, 239, 268, 290
CviQI	GTAC	5 cut(s)	251, 287, 535, 557, 692
DdeI	CTNAG	3 cut(s)	464, 585, 642
DpnI	GATC	6 cut(s)	12, 272, 543, 550, 654, 822
DpnII	GATC	6 cut(s)	10, 270, 541, 548, 652, 820
Eam1104I	CTCTTC	2 cut(s)	183, 733
EarI	CTCTTC	2 cut(s)	183, 733
EciI	GGCGGA	1 cut(s)	23
Eco130I	CCWWGG	2 cut(s)	177, 521
Eco24I	GRGCYC	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	518
EcoT14I	CCWWGG	2 cut(s)	177, 521
EcoT22I	ATGCAT	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	137
ErhI	CCWWGG	2 cut(s)	177, 521
FaeI	CATG	5 cut(s)	83, 224, 242, 271, 293
FalI	AAGNNNNNCTT	4 cut(s)	111, 143, 573, 605
FatI	CATG	5 cut(s)	79, 220, 238, 267, 289
FauNDI	CATATG	1 cut(s)	91
Fnu4HI	GCNGC	3 cut(s)	843, 888, 891
FokI	GGATG	2 cut(s)	417, 818
FriOI	GRGCYC	1 cut(s)	137
Fsp4HI	GCNGC	3 cut(s)	843, 888, 891
FspBI	CTAG	3 cut(s)	503, 531, 575
GluI	GCNGC	3 cut(s)	843, 888, 891
GsaI	CCCAGC	1 cut(s)	408
HaeIII	GGCC	1 cut(s)	571
Hin1II	CATG	5 cut(s)	83, 224, 242, 271, 293
HinfI	GANTC	1 cut(s)	377
HphI	GGTGA	4 cut(s)	205, 209, 427, 753
Hpy166II	GTNNAC	3 cut(s)	287, 625, 870
Hpy188I	TCNGA	2 cut(s)	109, 132
Hpy188III	TCNNGA	3 cut(s)	55, 355, 622
Hpy8I	GTNNAC	3 cut(s)	287, 625, 870
HpyAV	CCTTC	3 cut(s)	340, 412, 644
HpyCH4IV	ACGT	2 cut(s)	283, 386
HpyCH4V	TGCA	5 cut(s)	89, 158, 608, 710, 862
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 590, 720
HpyF3I	CTNAG	3 cut(s)	464, 585, 642
HpySE526I	ACGT	2 cut(s)	283, 386
Hsp92II	CATG	5 cut(s)	83, 224, 242, 271, 293
Kzo9I	GATC	6 cut(s)	10, 270, 541, 548, 652, 820
LmnI	GCTCC	2 cut(s)	132, 527
Lsp1109I	GCAGC	3 cut(s)	854, 877, 899
MaeI	CTAG	3 cut(s)	503, 531, 575
MaeII	ACGT	2 cut(s)	283, 386
MaeIII	GTNAC	4 cut(s)	70, 172, 209, 233
MalI	GATC	6 cut(s)	12, 272, 543, 550, 654, 822
MboI	GATC	6 cut(s)	10, 270, 541, 548, 652, 820
MboII	GAAGA	6 cut(s)	119, 152, 193, 200, 750, 796
MfeI	CAATTG	1 cut(s)	863
MflI	RGATCY	4 cut(s)	10, 541, 548, 820
MhlI	GDGCHC	2 cut(s)	137, 643
MluCI	AATT	3 cut(s)	863, 943, 960
MmeI	TCCRAC	2 cut(s)	645, 715
Mph1103I	ATGCAT	1 cut(s)	160
MroXI	GAANNNNTTC	2 cut(s)	126, 350
MseI	TTAA	3 cut(s)	255, 300, 779
MspA1I	CMGCKG	2 cut(s)	436, 890
MspCI	CTTAAG	1 cut(s)	254
MunI	CAATTG	1 cut(s)	863
Mva1269I	GAATGC	1 cut(s)	479
MwoI	GCNNNNNNNGC	3 cut(s)	42, 590, 720
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	6 cut(s)	10, 270, 541, 548, 652, 820
NlaIII	CATG	5 cut(s)	83, 224, 242, 271, 293
NlaIV	GGNNCC	3 cut(s)	12, 134, 372
NmuCI	GTSAC	1 cut(s)	233
NsiI	ATGCAT	1 cut(s)	160
NspI	RCATGY	1 cut(s)	293
PciI	ACATGT	1 cut(s)	289
PctI	GAATGC	1 cut(s)	479
PdmI	GAANNNNTTC	2 cut(s)	126, 350
PfeI	GAWTC	1 cut(s)	377
PflFI	GACNNNGTC	2 cut(s)	239, 335
PflMI	CCANNNNNTGG	1 cut(s)	20
PkrI	GCNGC	3 cut(s)	844, 889, 892
PscI	ACATGT	1 cut(s)	289
PspFI	CCCAGC	1 cut(s)	404
PspN4I	GGNNCC	3 cut(s)	12, 134, 372
PspPI	GGNCC	2 cut(s)	518, 569
PstNI	CAGNNNCTG	2 cut(s)	20, 725
PsuI	RGATCY	4 cut(s)	10, 541, 548, 820
PsyI	GACNNNGTC	2 cut(s)	239, 335
PvuII	CAGCTG	1 cut(s)	890
RsaI	GTAC	5 cut(s)	252, 288, 536, 558, 693
RsaNI	GTAC	5 cut(s)	251, 287, 535, 557, 692
SaqAI	TTAA	3 cut(s)	255, 300, 779
SatI	GCNGC	3 cut(s)	843, 888, 891
Sau3AI	GATC	6 cut(s)	10, 270, 541, 548, 652, 820
Sau96I	GGNCC	2 cut(s)	518, 569
ScaI	AGTACT	1 cut(s)	693
SduI	GDGCHC	2 cut(s)	137, 643
SfcI	CTRYAG	1 cut(s)	793
SinI	GGWCC	1 cut(s)	518
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	3 cut(s)	863, 943, 960
SsiI	CCGC	2 cut(s)	34, 434
SspMI	CTAG	3 cut(s)	503, 531, 575
StyI	CCWWGG	2 cut(s)	177, 521
TaiI	ACGT	2 cut(s)	286, 389
TaqI	TCGA	2 cut(s)	56, 186
TasI	AATT	3 cut(s)	863, 943, 960
TatI	WGTACW	4 cut(s)	250, 286, 556, 691
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	3 cut(s)	255, 300, 779
Tru9I	TTAA	3 cut(s)	255, 300, 779
TscAI	CASTG	3 cut(s)	238, 472, 877
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	3 cut(s)	842, 887, 890
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	5 cut(s)	108, 294, 489, 765, 912
TspRI	CASTG	3 cut(s)	238, 472, 877
Tth111I	GACNNNGTC	2 cut(s)	239, 335
Van91I	CCANNNNNTGG	1 cut(s)	20
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	518
XapI	RAATTY	2 cut(s)	943, 960
XceI	RCATGY	1 cut(s)	293
XmnI	GAANNNNTTC	2 cut(s)	126, 350
XspI	CTAG	3 cut(s)	503, 531, 575
ZrmI	AGTACT	1 cut(s)	693
Zsp2I	ATGCAT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.