AT5G62220

Exostosin family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
24988214 .. 24990331
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G62220.1

Sequence Viewer

Length: 1554 bp
ATGCTTCCTGTCTCAAATCCTTCCAGTCCTGAACATCTCCTCAAAAAATCCAGAACCCCAGACTCCACCACCTCCATTGATCGTAAGAACTCATTTAACTCGCTTCACTCGGTCGGAAACCGCTCTTCCTACATCGCCGCTTCTCGTAGCCACTGCACATGGCTGATCCTCTCTCTTCTATCTCTCCAACTGATCCTCTTCCTCACTCTCCGATCCATCCCTTTTCCTCACCGTCACATCCCCGAAAACTTCCCTTCTCCCGCCGCCGTCGTCACCACCACCGTCACAACCACCGTCATTTCTGCCGCCTCTTCCAATCCCCCTCTCTCATCCTCCTCATCTGACGAACGATGCGATTCAGGTCGAGTCTTCGTCTACGACATGCCAAAGATCTTCAACGAAGTGATTCTACAACAGTGTGATAATCTCAATCCATGGAGCTCTCGCTGCGACGCACTTTCTAACGACGGGTTTGGTCAAGAAGCGACGTCGTTAAGCAACGTGATCCCTAAAGATTTGGTTCAATCATGGTTTTGGACTGACCAATTCGTAACCGAAATTATTTTCCATAACCGGATTTTAAACCACCGGTGTCGGACTTTGGATCCGGAATCAGCTACGGCGTTTTATATACCGTTCTACGCTGGACTCGCAGTTGGTCAATATTTATGGTCAAATTACGCAGCGGCTGATCGTGACCGTCATTGTAAGATGATGACACAGTGGGTCAAAAATCAACCTTATTGGAATAGATCCAACGGTTGGGATCATTTCATTACTATGGGACGCATCACATGGGATTTTCGCAGGTCTAAAGACGAAGATTGGGGATCTAACTGTATTTATATCCCTGGTATGCGTAACATCACGCGCCTCCTTATTGAGCGTAACTCTTGGGATCATTTTGACGTCGGTGTACCGTACCCTACCGGATTCCACCCTAGATCGGACTCCGACGTCGTGAATTGGCAAGATTTTGTTCGGAATCGACGTCGTGAGACGTTGTTCTGTTTCGCTGGAGCTCCACGCGCCGGGATTGTGAATGATTTTAGAGGATTGCTTCTCCGTCACTGTGAGGAATCGCGTGGGAAGTGTCGGACGGTGGATTGTACCGTCGGGAAATGCTCGAATGGTTCGTCGGCGATTTTGGAGACGTTTCTCGGGTCTGATTTTTGTCTCCAGCCACGAGGAGATAGCTTCACACGCCGGTCGATATTTGATTGTATGTTGGCCGGTTCGATTCCGGTTTTCTTTTGGAGACGAAGCGCTTACATGCAGTATCAGTGGTTTTTACCGGATAAACCGGATAGTTATTCGGTTTTTATAGACCGGAACGAGGTAACAAACGGCACGACGTCTATAAAGGAAGTGTTGGAACGGTATAGCAAAGAAGATGTGAGGAAGATGAGAGAAAGAGTGATTGATTTGATACCGAATTTGGTTTACGCTAAGTCTCCGAATGGGTTAGAGACTTTCAAAGACGCTTTTGATGTGGCGATAGATGGAGTTTTTAGGAGATTCAAGGAGCAAGAGAAATGGTACAAATGGAGATGA

Protein Analysis

517

Amino Acids

59.64

Weight (kDa)

8.67

Isoelectric Point (pI)

53.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 118 - 455 1.7e-77 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62220
fragaria_vesca FvH4_7g28370
malus_domestica MD01G1187600.v1.1
prunus_persica Prupe.2G284000_v2.0.a1
pyrus_communis pycom01g19950
rosa_chinensis RchiOBHm_Chr1g0375351
rosa_laevigata RLG00000026669
rosa_multiflora Rmu_sc0000554.1_g000040 Rmu_ssc0000106.1_g000004
rosa_roxburghii Rroxscaffold_4G00282820
rosa_rugosa Rorug01G0390400
rosa_samantha Rh1AG400900 Rh1BG363400 Rh1CG376700 Rh1DG394200
rosa_wichuraiana Rw1G035590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 956
AatII GACGTC 5 cut(s) 491, 912, 960, 994, 1358
Acc36I ACCTGC 1 cut(s) 798
AccB7I CCANNNNNTGG 1 cut(s) 762
AccBSI CCGCTC 1 cut(s) 123
AccI GTMKAC 1 cut(s) 375
AccII CGCG 3 cut(s) 871, 1029, 1084
AccIII TCCGGA 1 cut(s) 607
AciI CCGC 6 cut(s) 121, 138, 261, 264, 306, 686
AcoI YGGCCR 1 cut(s) 1230
AcsI RAATTY 1 cut(s) 1435
AcyI GRCGYC 5 cut(s) 488, 909, 957, 991, 1355
AfaI GTAC 4 cut(s) 918, 923, 1111, 1541
AfeI AGCGCT 1 cut(s) 1267
AfiI CCNNNNNNNGG 4 cut(s) 762, 946, 1031, 1336
AgeI ACCGGT 1 cut(s) 588
AgsI TTSAA 4 cut(s) 397, 524, 1477, 1522
AjnI CCWGG 1 cut(s) 850
AluBI AGCT 4 cut(s) 441, 617, 1022, 1197
AluI AGCT 4 cut(s) 441, 617, 1022, 1197
Alw21I GWGCWC 2 cut(s) 443, 1024
Alw26I GTCTC 7 cut(s) 16, 992, 1145, 1181, 1252, 1458, 1463
AlwNI CAGNNNCTG 1 cut(s) 689
Ama87I CYCGRG 1 cut(s) 1160
Aor13HI TCCGGA 1 cut(s) 607
Aor51HI AGCGCT 1 cut(s) 1267
AoxI GGCC 1 cut(s) 1230
ApeKI GCWGC 2 cut(s) 447, 683
ApoI RAATTY 1 cut(s) 1435
ArsI GACNNNNNNTTYG 2 cut(s) 1121, 1153
AsiGI ACCGGT 1 cut(s) 588
Asp700I GAANNNNTTC 1 cut(s) 405
AspLEI GCGC 3 cut(s) 873, 1031, 1268
AsuC2I CCSGG 1 cut(s) 1033
AsuHPI GGTGA 2 cut(s) 221, 265
AvaI CYCGRG 1 cut(s) 1160
BamHI GGATCC 1 cut(s) 604
BanII GRGCYC 2 cut(s) 443, 1024
BarI GAAGNNNNNNTAC 2 cut(s) 393, 425
BauI CACGAG 1 cut(s) 1185
BbsI GAAGAC 1 cut(s) 361
Bbv12I GWGCWC 2 cut(s) 443, 1024
BbvI GCAGC 2 cut(s) 434, 695
BccI CCATC 2 cut(s) 224, 1496
BceAI ACGGC 3 cut(s) 251, 636, 1363
BciT130I CCWGG 1 cut(s) 852
BcnI CCSGG 1 cut(s) 1033
BcoDI GTCTC 7 cut(s) 16, 992, 1145, 1181, 1252, 1458, 1463
BfaI CTAG 1 cut(s) 942
BfoI RGCGCY 1 cut(s) 1269
BfuAI ACCTGC 1 cut(s) 798
BglII AGATCT 1 cut(s) 390
BisI GCNGC 6 cut(s) 138, 264, 306, 448, 684, 687
BlsI GCNGC 6 cut(s) 139, 265, 307, 449, 685, 688
Bme1390I CCNGG 2 cut(s) 852, 1033
BmeT110I CYCGRG 1 cut(s) 1160
BmiI GGNNCC 1 cut(s) 606
BmrFI CCNGG 2 cut(s) 852, 1033
BmsI GCATC 2 cut(s) 341, 798
BpiI GAAGAC 1 cut(s) 361
BplI GAGNNNNNCTC 2 cut(s) 875, 907
BpmI CTGGAG 2 cut(s) 1038, 1163
BpuMI CCSGG 1 cut(s) 1033
BsaHI GRCGYC 5 cut(s) 488, 909, 957, 991, 1355
BsaJI CCNNGG 2 cut(s) 434, 850
BsaWI WCCGGW 8 cut(s) 573, 588, 607, 929, 1243, 1294, 1303, 1329
Bsc4I CCNNNNNNNGG 4 cut(s) 762, 946, 1031, 1336
Bse118I RCCGGY 3 cut(s) 588, 1206, 1232
Bse1I ACTGG 1 cut(s) 24
BseAI TCCGGA 1 cut(s) 607
BseBI CCWGG 1 cut(s) 852
BseDI CCNNGG 2 cut(s) 434, 850
BseGI GGATG 3 cut(s) 216, 237, 329
BseLI CCNNNNNNNGG 4 cut(s) 762, 946, 1031, 1336
BseNI ACTGG 1 cut(s) 24
BseRI GAGGAG 3 cut(s) 29, 325, 1203
BseXI GCAGC 2 cut(s) 434, 695
BsgI GTGCAG 1 cut(s) 139
Bsh1236I CGCG 3 cut(s) 871, 1029, 1084
Bsh1285I CGRYCG 2 cut(s) 114, 1211
BshFI GGCC 1 cut(s) 1232
BshTI ACCGGT 1 cut(s) 588
BsiEI CGRYCG 2 cut(s) 114, 1211
BsiHKAI GWGCWC 2 cut(s) 443, 1024
BsiHKCI CYCGRG 1 cut(s) 1160
BslFI GGGAC 1 cut(s) 798
BslI CCNNNNNNNGG 4 cut(s) 762, 946, 1031, 1336
BsmAI GTCTC 7 cut(s) 16, 992, 1145, 1181, 1252, 1458, 1463
BsmBI CGTCTC 3 cut(s) 992, 1145, 1252
BsmFI GGGAC 1 cut(s) 798
BsnI GGCC 1 cut(s) 1232
BsoBI CYCGRG 1 cut(s) 1160
Bsp1286I GDGCHC 2 cut(s) 443, 1024
Bsp13I TCCGGA 1 cut(s) 607
Bsp19I CCATGG 1 cut(s) 434
BspACI CCGC 6 cut(s) 121, 138, 261, 264, 306, 686
BspANI GGCC 1 cut(s) 1232
BspEI TCCGGA 1 cut(s) 607
BspFNI CGCG 3 cut(s) 871, 1029, 1084
BspLI GGNNCC 1 cut(s) 606
BspMI ACCTGC 1 cut(s) 798
BspQI GCTCTTC 1 cut(s) 130
BsrBI CCGCTC 1 cut(s) 123
BsrFI RCCGGY 3 cut(s) 588, 1206, 1232
BsrI ACTGG 1 cut(s) 24
BssAI RCCGGY 3 cut(s) 588, 1206, 1232
BssECI CCNNGG 2 cut(s) 434, 850
BssNI GRCGYC 5 cut(s) 488, 909, 957, 991, 1355
BssSI CACGAG 1 cut(s) 1185
BssT1I CCWWGG 1 cut(s) 434
Bst2BI CACGAG 1 cut(s) 1185
Bst2UI CCWGG 1 cut(s) 852
Bst6I CTCTTC 4 cut(s) 130, 180, 203, 316
BstACI GRCGYC 5 cut(s) 488, 909, 957, 991, 1355
BstDEI CTNAG 1 cut(s) 1449
BstDSI CCRYGG 1 cut(s) 434
BstF5I GGATG 3 cut(s) 216, 237, 329
BstFNI CGCG 3 cut(s) 871, 1029, 1084
BstH2I RGCGCY 1 cut(s) 1269
BstHHI GCGC 3 cut(s) 873, 1031, 1268
BstMAI GTCTC 7 cut(s) 16, 992, 1145, 1181, 1252, 1458, 1463
BstMCI CGRYCG 2 cut(s) 114, 1211
BstMWI GCNNNNNNNGC 4 cut(s) 447, 650, 1028, 1203
BstNI CCWGG 1 cut(s) 852
BstNSI RCATGY 2 cut(s) 385, 1276
BstSCI CCNGG 2 cut(s) 850, 1031
BstUI CGCG 3 cut(s) 871, 1029, 1084
BstV1I GCAGC 2 cut(s) 434, 695
BstV2I GAAGAC 1 cut(s) 361
BstX2I RGATCY 4 cut(s) 390, 604, 752, 830
BstYI RGATCY 4 cut(s) 390, 604, 752, 830
BsuRI GGCC 1 cut(s) 1232
BtgI CCRYGG 1 cut(s) 434
BtgZI GCGATG 1 cut(s) 118
BtsCI GGATG 3 cut(s) 216, 237, 329
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 5 cut(s) 151, 422, 728, 1069, 1289
BveI ACCTGC 1 cut(s) 798
CaiI CAGNNNCTG 1 cut(s) 689
CfoI GCGC 3 cut(s) 873, 1031, 1268
Cfr10I RCCGGY 3 cut(s) 588, 1206, 1232
CseI GACGC 3 cut(s) 461, 795, 1490
Csp6I GTAC 4 cut(s) 917, 922, 1110, 1540
CspAI ACCGGT 1 cut(s) 588
CspCI CAANNNNNGTGG 2 cut(s) 58, 93
CviAII CATG 6 cut(s) 159, 382, 435, 528, 795, 1273
CviJI RGCY 9 cut(s) 150, 163, 441, 617, 689, 1022, 1183, 1197, 1232
CviKI_1 RGCY 9 cut(s) 150, 163, 441, 617, 689, 1022, 1183, 1197, 1232
CviQI GTAC 4 cut(s) 917, 922, 1110, 1540
DdeI CTNAG 1 cut(s) 1449
DraI TTTAAA 1 cut(s) 582
DrdI GACNNNNNNGTC 1 cut(s) 956
DseDI GACNNNNNNGTC 1 cut(s) 956
EaeI YGGCCR 1 cut(s) 1230
Eam1104I CTCTTC 4 cut(s) 130, 180, 203, 316
EarI CTCTTC 4 cut(s) 130, 180, 203, 316
Ecl136II GAGCTC 2 cut(s) 441, 1022
Eco130I CCWWGG 1 cut(s) 434
Eco24I GRGCYC 2 cut(s) 443, 1024
Eco47III AGCGCT 1 cut(s) 1267
Eco53kI GAGCTC 2 cut(s) 441, 1022
Eco88I CYCGRG 1 cut(s) 1160
EcoICRI GAGCTC 2 cut(s) 441, 1022
EcoRII CCWGG 1 cut(s) 850
EcoT14I CCWWGG 1 cut(s) 434
EcoT38I GRGCYC 2 cut(s) 443, 1024
ErhI CCWWGG 1 cut(s) 434
Esp3I CGTCTC 3 cut(s) 992, 1145, 1252
FaeI CATG 6 cut(s) 162, 385, 438, 531, 798, 1276
FaqI GGGAC 1 cut(s) 798
FatI CATG 6 cut(s) 158, 381, 434, 527, 794, 1272
FauI CCCGC 1 cut(s) 268
FblI GTMKAC 1 cut(s) 375
Fnu4HI GCNGC 6 cut(s) 138, 264, 306, 448, 684, 687
FokI GGATG 3 cut(s) 203, 224, 316
FriOI GRGCYC 2 cut(s) 443, 1024
Fsp4HI GCNGC 6 cut(s) 138, 264, 306, 448, 684, 687
FspBI CTAG 1 cut(s) 942
GlaI GCGC 3 cut(s) 872, 1030, 1267
GluI GCNGC 6 cut(s) 138, 264, 306, 448, 684, 687
GsuI CTGGAG 2 cut(s) 1038, 1163
HaeII RGCGCY 1 cut(s) 1269
HaeIII GGCC 1 cut(s) 1232
HgaI GACGC 3 cut(s) 461, 795, 1490
HhaI GCGC 3 cut(s) 873, 1031, 1268
Hin1I GRCGYC 5 cut(s) 488, 909, 957, 991, 1355
Hin1II CATG 6 cut(s) 162, 385, 438, 531, 798, 1276
Hin6I GCGC 3 cut(s) 871, 1029, 1266
HinP1I GCGC 3 cut(s) 871, 1029, 1266
HphI GGTGA 2 cut(s) 221, 265
Hpy166II GTNNAC 3 cut(s) 376, 917, 1444
Hpy188III TCNNGA 8 cut(s) 29, 51, 479, 608, 695, 961, 995, 1117
Hpy8I GTNNAC 3 cut(s) 376, 917, 1444
HpyAV CCTTC 2 cut(s) 30, 264
HpyCH4IV ACGT 8 cut(s) 488, 501, 909, 957, 991, 1001, 1154, 1355
HpyCH4V TGCA 2 cut(s) 156, 1276
HpyF10VI GCNNNNNNNGC 4 cut(s) 447, 650, 1028, 1203
HpyF3I CTNAG 1 cut(s) 1449
HpySE526I ACGT 8 cut(s) 488, 501, 909, 957, 991, 1001, 1154, 1355
Hsp92I GRCGYC 5 cut(s) 488, 909, 957, 991, 1355
Hsp92II CATG 6 cut(s) 162, 385, 438, 531, 798, 1276
HspAI GCGC 3 cut(s) 871, 1029, 1266
Kpn2I TCCGGA 1 cut(s) 607
LguI GCTCTTC 1 cut(s) 130
LmnI GCTCC 4 cut(s) 438, 1019, 1027, 1525
Lsp1109I GCAGC 2 cut(s) 434, 695
LweI GCATC 2 cut(s) 341, 798
MaeI CTAG 1 cut(s) 942
MaeII ACGT 8 cut(s) 488, 501, 909, 957, 991, 1001, 1154, 1355
MaeIII GTNAC 9 cut(s) 233, 271, 283, 550, 695, 860, 887, 1067, 1339
MbiI CCGCTC 1 cut(s) 123
MboII GAAGA 9 cut(s) 117, 167, 190, 303, 361, 385, 833, 1403, 1414
MflI RGATCY 4 cut(s) 390, 604, 752, 830
MhlI GDGCHC 2 cut(s) 443, 1024
MluCI AATT 5 cut(s) 545, 558, 676, 964, 1435
MlyI GAGTC 4 cut(s) 56, 375, 642, 944
MmeI TCCRAC 7 cut(s) 94, 211, 575, 780, 978, 1076, 1353
MroI TCCGGA 1 cut(s) 607
MroXI GAANNNNTTC 1 cut(s) 405
MseI TTAA 3 cut(s) 96, 494, 581
MslI CAYNNNNRTG 1 cut(s) 779
MspA1I CMGCKG 1 cut(s) 686
MspR9I CCNGG 2 cut(s) 852, 1033
MvaI CCWGG 1 cut(s) 852
MvnI CGCG 3 cut(s) 871, 1029, 1084
MwoI GCNNNNNNNGC 4 cut(s) 447, 650, 1028, 1203
NciI CCSGG 1 cut(s) 1033
NcoI CCATGG 1 cut(s) 434
NlaIII CATG 6 cut(s) 162, 385, 438, 531, 798, 1276
NlaIV GGNNCC 1 cut(s) 606
NmuCI GTSAC 5 cut(s) 233, 271, 283, 695, 1067
NspI RCATGY 2 cut(s) 385, 1276
PciSI GCTCTTC 1 cut(s) 130
PcsI WCGNNNNNNNCGW 3 cut(s) 351, 988, 1133
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 8 cut(s) 356, 406, 611, 933, 985, 1079, 1240, 1518
PflMI CCANNNNNTGG 1 cut(s) 762
PinAI ACCGGT 1 cut(s) 588
PkrI GCNGC 6 cut(s) 139, 265, 307, 449, 685, 688
PleI GAGTC 4 cut(s) 56, 374, 642, 944
PpsI GAGTC 4 cut(s) 56, 374, 642, 944
Psp124BI GAGCTC 2 cut(s) 443, 1024
Psp6I CCWGG 1 cut(s) 850
PspGI CCWGG 1 cut(s) 850
PspN4I GGNNCC 1 cut(s) 606
PstNI CAGNNNCTG 1 cut(s) 689
PsuI RGATCY 4 cut(s) 390, 604, 752, 830
RsaI GTAC 4 cut(s) 918, 923, 1111, 1541
RsaNI GTAC 4 cut(s) 917, 922, 1110, 1540
RseI CAYNNNNRTG 1 cut(s) 779
SacI GAGCTC 2 cut(s) 443, 1024
SapI GCTCTTC 1 cut(s) 130
SaqAI TTAA 3 cut(s) 96, 494, 581
SatI GCNGC 6 cut(s) 138, 264, 306, 448, 684, 687
SchI GAGTC 4 cut(s) 56, 375, 642, 944
ScrFI CCNGG 2 cut(s) 852, 1033
SduI GDGCHC 2 cut(s) 443, 1024
SfaNI GCATC 2 cut(s) 341, 798
SgrAI CRCCGGYG 1 cut(s) 588
SmiMI CAYNNNNRTG 1 cut(s) 779
Sse9I AATT 5 cut(s) 545, 558, 676, 964, 1435
SsiI CCGC 6 cut(s) 121, 138, 261, 264, 306, 686
SspI AATATT 1 cut(s) 665
SspMI CTAG 1 cut(s) 942
SstI GAGCTC 2 cut(s) 443, 1024
StyD4I CCNGG 2 cut(s) 850, 1031
StyI CCWWGG 1 cut(s) 434
TaiI ACGT 8 cut(s) 491, 504, 912, 960, 994, 1004, 1157, 1358
TaqI TCGA 5 cut(s) 364, 988, 1127, 1211, 1238
TaqII GACCGA 1 cut(s) 100
TasI AATT 5 cut(s) 545, 558, 676, 964, 1435
TauI GCSGC 4 cut(s) 140, 266, 308, 689
TfiI GAWTC 8 cut(s) 356, 406, 611, 933, 985, 1079, 1240, 1518
Tru1I TTAA 3 cut(s) 96, 494, 581
Tru9I TTAA 3 cut(s) 96, 494, 581
TscAI CASTG 5 cut(s) 158, 422, 728, 1076, 1289
TseFI GTSAC 5 cut(s) 233, 271, 283, 695, 1067
TseI GCWGC 2 cut(s) 447, 683
Tsp45I GTSAC 5 cut(s) 233, 271, 283, 695, 1067
TspDTI ATGAA 1 cut(s) 763
TspGWI ACGGA 1 cut(s) 1055
TspRI CASTG 5 cut(s) 158, 422, 728, 1076, 1289
Van91I CCANNNNNTGG 1 cut(s) 762
XapI RAATTY 1 cut(s) 1435
XceI RCATGY 2 cut(s) 385, 1276
XmiI GTMKAC 1 cut(s) 375
XmnI GAANNNNTTC 1 cut(s) 405
XspI CTAG 1 cut(s) 942
ZraI GACGTC 5 cut(s) 489, 910, 958, 992, 1356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.