Rroxscaffold_4G00282820

xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0015349
Physical Location & Seq
Reverse (-)
4946483 .. 4948796
2314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00282820.1

Sequence Viewer

Length: 666 bp
ATGGCTACTCATGGCCATACTCTCCCCTCCAAGTCATACTCCTCTTTTTCTCTCGGCACCCGCCGTTTCTCCCGCCAAGACCTCCCTCCGCCGTATGGTTCTGTGGCTGGATCAATAGTCCTACCCGAACAGCAGGAAGAACAAGACGAATGCTGTTCGGGTCGGGTTTTCGTCTACGACTTACCGAAAACTCTCAATCAAGAGATTCTACAAAACTGCGACAACCTCAATCCGTGGAGCTCGCGCTGCGACGCGCTGGCGAACGACGGGTTCGGTCAGCCGGCGAACGGGATCGCCGGAGTCGTGCCGGAGAACCTTGCTCCGGCGTGGTACTGGACCGACCAGTTCGTATCGGAGGTGATTTTCCACAATCGGATCATGCACCACAAGTGCCGGGTCATGGAGCCGGAAAACGCGACGGCGTTTTACATCCCCTTCTACGTCGGTCTCGCCGTCGGGAAGTACTTATGGTCGAACACCTCCACCGCCCAGGACCGCGATCGCCACTGCGAAATGATGCTGAGCTGGGTCCAGGACCAACCGTACTACAAGAGATCCGACGGCTGGGATCACTTCCTCACCATGGGCCGGATCACCTGGGACTTCCGCCGCTCCAAGGACCCGGGAATGGGGCTCCGGATGCATTTACAAGCCGGGGATGCGTAA

Protein Analysis

221

Amino Acids

25.23

Weight (kDa)

5.87

Isoelectric Point (pI)

64.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 54 - 207 1.4e-28 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62220
fragaria_vesca FvH4_7g28370
malus_domestica MD01G1187600.v1.1
prunus_persica Prupe.2G284000_v2.0.a1
pyrus_communis pycom01g19950
rosa_chinensis RchiOBHm_Chr1g0375351
rosa_laevigata RLG00000026669
rosa_multiflora Rmu_sc0000554.1_g000040 Rmu_ssc0000106.1_g000004
rosa_roxburghii Rroxscaffold_4G00282820
rosa_rugosa Rorug01G0390400
rosa_samantha Rh1AG400900 Rh1BG363400 Rh1CG376700 Rh1DG394200
rosa_wichuraiana Rw1G035590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AccBSI CCGCTC 1 cut(s) 612
AccI GTMKAC 1 cut(s) 174
AccII CGCG 4 cut(s) 244, 254, 416, 498
AccIII TCCGGA 1 cut(s) 636
AciI CCGC 7 cut(s) 61, 73, 89, 486, 496, 607, 610
AclWI GGATC 6 cut(s) 118, 299, 383, 549, 576, 599
AcoI YGGCCR 1 cut(s) 13
AfaI GTAC 3 cut(s) 332, 464, 545
AjnI CCWGG 3 cut(s) 489, 531, 596
AluBI AGCT 2 cut(s) 240, 525
AluI AGCT 2 cut(s) 240, 525
Alw21I GWGCWC 1 cut(s) 242
Alw26I GTCTC 1 cut(s) 452
AlwI GGATC 6 cut(s) 118, 299, 383, 549, 576, 599
Ama87I CYCGRG 1 cut(s) 622
Aor13HI TCCGGA 1 cut(s) 636
AoxI GGCC 2 cut(s) 13, 586
ApeKI GCWGC 1 cut(s) 246
AsiSI GCGATCGC 1 cut(s) 502
AspLEI GCGC 2 cut(s) 246, 256
AspS9I GGNCC 6 cut(s) 336, 493, 529, 535, 586, 619
AsuC2I CCSGG 4 cut(s) 395, 623, 624, 655
AsuHPI GGTGA 3 cut(s) 370, 571, 586
AvaI CYCGRG 1 cut(s) 622
AvaII GGWCC 5 cut(s) 336, 493, 529, 535, 619
BalI TGGCCA 1 cut(s) 15
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 2 cut(s) 242, 636
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 233
BceAI ACGGC 5 cut(s) 48, 76, 435, 437, 577
BciT130I CCWGG 3 cut(s) 491, 533, 598
BcnI CCSGG 4 cut(s) 395, 623, 624, 655
BcoDI GTCTC 1 cut(s) 452
BisI GCNGC 2 cut(s) 247, 610
BlpI GCTNAGC 1 cut(s) 521
BlsI GCNGC 2 cut(s) 248, 611
BmcAI AGTACT 1 cut(s) 464
Bme1390I CCNGG 7 cut(s) 395, 491, 533, 598, 623, 624, 655
Bme18I GGWCC 5 cut(s) 336, 493, 529, 535, 619
BmeT110I CYCGRG 1 cut(s) 622
BmgT120I GGNCC 6 cut(s) 336, 493, 529, 535, 586, 619
BmiI GGNNCC 5 cut(s) 58, 405, 530, 621, 635
BmrFI CCNGG 7 cut(s) 395, 491, 533, 598, 623, 624, 655
BmsI GCATC 3 cut(s) 507, 630, 649
Bpu1102I GCTNAGC 1 cut(s) 521
BpuMI CCSGG 4 cut(s) 395, 623, 624, 655
BsaI GGTCTC 1 cut(s) 452
BsaJI CCNNGG 7 cut(s) 233, 489, 582, 597, 615, 622, 654
BsaWI WCCGGW 1 cut(s) 636
Bse118I RCCGGY 1 cut(s) 280
Bse1I ACTGG 2 cut(s) 338, 343
BseAI TCCGGA 1 cut(s) 636
BseBI CCWGG 3 cut(s) 491, 533, 598
BseDI CCNNGG 7 cut(s) 233, 489, 582, 597, 615, 622, 654
BseGI GGATG 3 cut(s) 429, 645, 664
BseMII CTCAG 1 cut(s) 512
BseNI ACTGG 2 cut(s) 338, 343
BseRI GAGGAG 1 cut(s) 31
BseXI GCAGC 1 cut(s) 233
BseYI CCCAGC 2 cut(s) 525, 564
Bsh1236I CGCG 4 cut(s) 244, 254, 416, 498
Bsh1285I CGRYCG 1 cut(s) 502
BshFI GGCC 2 cut(s) 15, 588
BshNI GGYRCC 1 cut(s) 56
BsiEI CGRYCG 1 cut(s) 502
BsiHKAI GWGCWC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 622
BslFI GGGAC 1 cut(s) 614
BsmAI GTCTC 1 cut(s) 452
BsmFI GGGAC 1 cut(s) 614
BsmI GAATGC 1 cut(s) 155
BsnI GGCC 2 cut(s) 15, 588
Bso31I GGTCTC 1 cut(s) 452
BsoBI CYCGRG 1 cut(s) 622
Bsp1286I GDGCHC 2 cut(s) 242, 636
Bsp13I TCCGGA 1 cut(s) 636
Bsp143I GATC 7 cut(s) 110, 291, 375, 499, 554, 568, 591
Bsp1720I GCTNAGC 1 cut(s) 521
Bsp19I CCATGG 1 cut(s) 582
BspACI CCGC 7 cut(s) 61, 73, 89, 486, 496, 607, 610
BspANI GGCC 2 cut(s) 15, 588
BspCNI CTCAG 1 cut(s) 513
BspEI TCCGGA 1 cut(s) 636
BspFNI CGCG 4 cut(s) 244, 254, 416, 498
BspLI GGNNCC 5 cut(s) 58, 405, 530, 621, 635
BspPI GGATC 6 cut(s) 118, 299, 383, 549, 576, 599
BspT107I GGYRCC 1 cut(s) 56
BspTNI GGTCTC 1 cut(s) 452
BsrBI CCGCTC 1 cut(s) 612
BsrFI RCCGGY 1 cut(s) 280
BsrI ACTGG 2 cut(s) 338, 343
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 7 cut(s) 233, 489, 582, 597, 615, 622, 654
BssMI GATC 7 cut(s) 110, 291, 375, 499, 554, 568, 591
BssT1I CCWWGG 2 cut(s) 582, 615
Bst2UI CCWGG 3 cut(s) 491, 533, 598
Bst4CI ACNGT 1 cut(s) 543
BstC8I GCNNGC 3 cut(s) 242, 258, 282
BstDEI CTNAG 1 cut(s) 521
BstDSI CCRYGG 2 cut(s) 233, 582
BstF5I GGATG 3 cut(s) 429, 645, 664
BstFNI CGCG 4 cut(s) 244, 254, 416, 498
BstHHI GCGC 2 cut(s) 246, 256
BstKTI GATC 7 cut(s) 113, 294, 378, 502, 557, 571, 594
BstMAI GTCTC 1 cut(s) 452
BstMBI GATC 7 cut(s) 110, 291, 375, 499, 554, 568, 591
BstMCI CGRYCG 1 cut(s) 502
BstMWI GCNNNNNNNGC 3 cut(s) 246, 640, 659
BstNI CCWGG 3 cut(s) 491, 533, 598
BstSCI CCNGG 7 cut(s) 393, 489, 531, 596, 621, 622, 653
BstUI CGCG 4 cut(s) 244, 254, 416, 498
BstV1I GCAGC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 554
BstYI RGATCY 1 cut(s) 554
BsuRI GGCC 2 cut(s) 15, 588
BtgI CCRYGG 2 cut(s) 233, 582
BtsCI GGATG 3 cut(s) 429, 645, 664
BtsI GCAGTG 1 cut(s) 505
BtsIMutI CAGTG 1 cut(s) 505
Cac8I GCNNGC 3 cut(s) 242, 258, 282
CfoI GCGC 2 cut(s) 246, 256
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 6 cut(s) 336, 493, 529, 535, 586, 619
Cfr9I CCCGGG 1 cut(s) 622
CseI GACGC 1 cut(s) 260
Csp6I GTAC 3 cut(s) 331, 463, 544
CviAII CATG 4 cut(s) 11, 379, 400, 583
CviQI GTAC 3 cut(s) 331, 463, 544
DdeI CTNAG 1 cut(s) 521
DpnI GATC 7 cut(s) 112, 293, 377, 501, 556, 570, 593
DpnII GATC 7 cut(s) 110, 291, 375, 499, 554, 568, 591
EaeI YGGCCR 1 cut(s) 13
EciI GGCGGA 2 cut(s) 78, 596
Ecl136II GAGCTC 1 cut(s) 240
Eco130I CCWWGG 2 cut(s) 582, 615
Eco24I GRGCYC 2 cut(s) 242, 636
Eco31I GGTCTC 1 cut(s) 452
Eco47I GGWCC 5 cut(s) 336, 493, 529, 535, 619
Eco53kI GAGCTC 1 cut(s) 240
Eco88I CYCGRG 1 cut(s) 622
EcoICRI GAGCTC 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 619
EcoRII CCWGG 3 cut(s) 489, 531, 596
EcoT14I CCWWGG 2 cut(s) 582, 615
EcoT22I ATGCAT 1 cut(s) 645
EcoT38I GRGCYC 2 cut(s) 242, 636
ErhI CCWWGG 2 cut(s) 582, 615
FaeI CATG 4 cut(s) 14, 382, 403, 586
FaiI YATR 8 cut(s) 12, 18, 37, 96, 380, 401, 469, 584
FaqI GGGAC 1 cut(s) 614
FatI CATG 4 cut(s) 10, 378, 399, 582
FauI CCCGC 2 cut(s) 68, 80
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 2 cut(s) 247, 610
FokI GGATG 2 cut(s) 416, 652
FriOI GRGCYC 2 cut(s) 242, 636
Fsp4HI GCNGC 2 cut(s) 247, 610
GlaI GCGC 2 cut(s) 245, 255
GluI GCNGC 2 cut(s) 247, 610
GsaI CCCAGC 2 cut(s) 529, 568
HaeIII GGCC 2 cut(s) 15, 588
HgaI GACGC 1 cut(s) 260
HhaI GCGC 2 cut(s) 246, 256
Hin1II CATG 4 cut(s) 14, 382, 403, 586
Hin6I GCGC 2 cut(s) 244, 254
HinP1I GCGC 2 cut(s) 244, 254
HinfI GANTC 2 cut(s) 205, 300
HphI GGTGA 3 cut(s) 370, 571, 586
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 3 cut(s) 355, 375, 559
Hpy188III TCNNGA 3 cut(s) 200, 457, 637
Hpy8I GTNNAC 1 cut(s) 175
Hpy99I CGWCG 6 cut(s) 254, 269, 421, 446, 458, 563
HpyAV CCTTC 1 cut(s) 445
HpyCH4III ACNGT 1 cut(s) 543
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 2 cut(s) 382, 643
HpyF10VI GCNNNNNNNGC 3 cut(s) 246, 640, 659
HpyF3I CTNAG 1 cut(s) 521
HpySE526I ACGT 1 cut(s) 441
Hsp92II CATG 4 cut(s) 14, 382, 403, 586
HspAI GCGC 2 cut(s) 244, 254
Kpn2I TCCGGA 1 cut(s) 636
KroI GCCGGC 1 cut(s) 280
KroNI GCCGGC 1 cut(s) 282
Kzo9I GATC 7 cut(s) 110, 291, 375, 499, 554, 568, 591
LmnI GCTCC 5 cut(s) 237, 325, 403, 617, 639
Lsp1109I GCAGC 1 cut(s) 233
LweI GCATC 3 cut(s) 507, 630, 649
MaeII ACGT 1 cut(s) 441
MalI GATC 7 cut(s) 112, 293, 377, 501, 556, 570, 593
MbiI CCGCTC 1 cut(s) 612
MboI GATC 7 cut(s) 110, 291, 375, 499, 554, 568, 591
MboII GAAGA 1 cut(s) 149
MflI RGATCY 1 cut(s) 554
MhlI GDGCHC 2 cut(s) 242, 636
MlsI TGGCCA 1 cut(s) 15
MluNI TGGCCA 1 cut(s) 15
MlyI GAGTC 1 cut(s) 309
MmeI TCCRAC 1 cut(s) 582
MnlI CCTC 8 cut(s) 37, 52, 92, 96, 236, 349, 490, 587
Mox20I TGGCCA 1 cut(s) 15
Mph1103I ATGCAT 1 cut(s) 645
MroI TCCGGA 1 cut(s) 636
MroNI GCCGGC 1 cut(s) 280
MscI TGGCCA 1 cut(s) 15
Msp20I TGGCCA 1 cut(s) 15
MspR9I CCNGG 7 cut(s) 395, 491, 533, 598, 623, 624, 655
Mva1269I GAATGC 1 cut(s) 155
MvaI CCWGG 3 cut(s) 491, 533, 598
MvnI CGCG 4 cut(s) 244, 254, 416, 498
MwoI GCNNNNNNNGC 3 cut(s) 246, 640, 659
NaeI GCCGGC 1 cut(s) 282
NciI CCSGG 4 cut(s) 395, 623, 624, 655
NcoI CCATGG 1 cut(s) 582
NdeII GATC 7 cut(s) 110, 291, 375, 499, 554, 568, 591
NgoMIV GCCGGC 1 cut(s) 280
NlaIII CATG 4 cut(s) 14, 382, 403, 586
NlaIV GGNNCC 5 cut(s) 58, 405, 530, 621, 635
NmeAIII GCCGAG 1 cut(s) 33
NsiI ATGCAT 1 cut(s) 645
PcsI WCGNNNNNNNCGW 2 cut(s) 300, 450
PctI GAATGC 1 cut(s) 155
PdiI GCCGGC 1 cut(s) 282
PfeI GAWTC 1 cut(s) 205
PfoI TCCNGGA 1 cut(s) 531
PkrI GCNGC 2 cut(s) 248, 611
Ple19I CGATCG 1 cut(s) 502
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
PpuMI RGGWCCY 1 cut(s) 619
Psp124BI GAGCTC 1 cut(s) 242
Psp5II RGGWCCY 1 cut(s) 619
Psp6I CCWGG 3 cut(s) 489, 531, 596
PspFI CCCAGC 2 cut(s) 525, 564
PspGI CCWGG 3 cut(s) 489, 531, 596
PspN4I GGNNCC 5 cut(s) 58, 405, 530, 621, 635
PspPI GGNCC 6 cut(s) 336, 493, 529, 535, 586, 619
PspPPI RGGWCCY 1 cut(s) 619
PsuI RGATCY 1 cut(s) 554
PvuI CGATCG 1 cut(s) 502
RgaI GCGATCGC 1 cut(s) 502
RsaI GTAC 3 cut(s) 332, 464, 545
RsaNI GTAC 3 cut(s) 331, 463, 544
SacI GAGCTC 1 cut(s) 242
SatI GCNGC 2 cut(s) 247, 610
Sau3AI GATC 7 cut(s) 110, 291, 375, 499, 554, 568, 591
Sau96I GGNCC 6 cut(s) 336, 493, 529, 535, 586, 619
ScaI AGTACT 1 cut(s) 464
SchI GAGTC 1 cut(s) 309
ScrFI CCNGG 7 cut(s) 395, 491, 533, 598, 623, 624, 655
SduI GDGCHC 2 cut(s) 242, 636
SetI ASST 9 cut(s) 84, 228, 242, 318, 360, 444, 482, 527, 599
SfaAI GCGATCGC 1 cut(s) 502
SfaNI GCATC 3 cut(s) 507, 630, 649
SgfI GCGATCGC 1 cut(s) 502
SinI GGWCC 5 cut(s) 336, 493, 529, 535, 619
SmaI CCCGGG 1 cut(s) 624
SsiI CCGC 7 cut(s) 61, 73, 89, 486, 496, 607, 610
SstI GAGCTC 1 cut(s) 242
StyD4I CCNGG 7 cut(s) 393, 489, 531, 596, 621, 622, 653
StyI CCWWGG 2 cut(s) 582, 615
TaaI ACNGT 1 cut(s) 543
TaiI ACGT 1 cut(s) 444
TaqI TCGA 1 cut(s) 473
TaqII GACCGA 3 cut(s) 263, 353, 434
TatI WGTACW 1 cut(s) 462
TauI GCSGC 1 cut(s) 612
TfiI GAWTC 1 cut(s) 205
TscAI CASTG 1 cut(s) 512
TseI GCWGC 1 cut(s) 246
TspGWI ACGGA 1 cut(s) 222
TspMI CCCGGG 1 cut(s) 622
TspRI CASTG 1 cut(s) 512
VpaK11BI GGWCC 5 cut(s) 336, 493, 529, 535, 619
XmaI CCCGGG 1 cut(s) 622
XmiI GTMKAC 1 cut(s) 174
ZrmI AGTACT 1 cut(s) 464
Zsp2I ATGCAT 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.