Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0015349

Physical Location & Seq

Genomic Coordinates Forward (+)

50113244 .. 50116138

Gene Structure 2895 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0390400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAAGGCTGCCAAAGGCAAAGGAACTGTGAAGAAGGACAAGAAAGAAGTATTGAAGCCTGTTGACGACAGAAAGGTGGGAAAGCGAAAGGCAGTGGCTGAGGTTAACAAGAGCAGCGGAAAATTGGCCAAGAACTCAAAATCGGCCAAAAAGGACCCTAACAAACCAAAGAAGCCTGCTAGTGCTTTTTTTGTTTTTCTTGAAGAGTTCAGAATAACTTACAAGCAAGAGCACCCGAATGTGAAAGCTGTGTCAGCTGTGGGGAAAGCTGGCGGAGCAAAGTGGAAATCTATGTCTGCCGCGGAGAAAGCTCCATATGAAGCTAAAGCAGCTAAAAGGAAAACGGAGTATGAAAAACTTATGAATGCCTACAACACTAAACAGGAGGATACGGATGGTGATGATGATGAAGAACCTGAAAAACCAAAAGCCAGCGTGACCCATGAAGATGAGGAGAGTGGGGAGGAAGATGATGAAGATGACGATGATGAGGATGATGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009250 GO:0009969 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

168

Amino Acids

18.65

Weight (kDa)

5.67

Isoelectric Point (pI)

33.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_box_2	PF09011	53 - 125	1.8e-12	HMG-box domain
HMG_box	PF00505	56 - 125	9.1e-21	HMG (high mobility group) box
HMG_WDHD1	PF24815	59 - 109	4.4e-10	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62220
fragaria_vesca	FvH4_7g28370
malus_domestica	MD01G1187600.v1.1
prunus_persica	Prupe.2G284000_v2.0.a1
pyrus_communis	pycom01g19950
rosa_chinensis	RchiOBHm_Chr1g0375351
rosa_laevigata	RLG00000026669
rosa_multiflora	Rmu_sc0000554.1_g000040 Rmu_ssc0000106.1_g000004
rosa_roxburghii	Rroxscaffold_4G00282820
rosa_rugosa	Rorug01G0390400
rosa_samantha	Rh1AG400900 Rh1BG363400 Rh1CG376700 Rh1DG394200
rosa_wichuraiana	Rw1G035590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	302
AciI	CCGC	4 cut(s)	117, 273, 300, 302
AcoI	YGGCCR	2 cut(s)	126, 144
AgsI	TTSAA	2 cut(s)	55, 203
AluBI	AGCT	6 cut(s)	248, 257, 269, 311, 323, 332
AluI	AGCT	6 cut(s)	248, 257, 269, 311, 323, 332
Alw21I	GWGCWC	1 cut(s)	234
AlwNI	CAGNNNCTG	1 cut(s)	98
AoxI	GGCC	2 cut(s)	126, 144
ApeKI	GCWGC	3 cut(s)	8, 114, 329
AspS9I	GGNCC	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	154
BalI	TGGCCA	1 cut(s)	128
Bbv12I	GWGCWC	1 cut(s)	234
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	2 cut(s)	126, 341
BccI	CCATC	1 cut(s)	389
BciVI	GTATCC	1 cut(s)	382
BfaI	CTAG	1 cut(s)	180
BfuI	GTATCC	1 cut(s)	382
BisI	GCNGC	4 cut(s)	9, 115, 300, 330
BlsI	GCNGC	4 cut(s)	10, 116, 301, 331
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	156
Bpu10I	CCTNAGC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	2 cut(s)	400, 499
BseMII	CTCAG	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	467
BseXI	GCAGC	2 cut(s)	126, 341
Bsh1236I	CGCG	1 cut(s)	302
BshFI	GGCC	2 cut(s)	128, 146
BsiHKAI	GWGCWC	1 cut(s)	234
BsmI	GAATGC	1 cut(s)	370
BsnI	GGCC	2 cut(s)	128, 146
Bsp1286I	GDGCHC	1 cut(s)	234
BspACI	CCGC	4 cut(s)	117, 273, 300, 302
BspANI	GGCC	2 cut(s)	128, 146
BspCNI	CTCAG	1 cut(s)	91
BspFNI	CGCG	1 cut(s)	302
BspLI	GGNNCC	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	198
BstC8I	GCNNGC	3 cut(s)	177, 271, 433
BstDEI	CTNAG	1 cut(s)	99
BstDSI	CCRYGG	1 cut(s)	300
BstF5I	GGATG	2 cut(s)	400, 499
BstFNI	CGCG	1 cut(s)	302
BstMWI	GCNNNNNNNGC	4 cut(s)	254, 275, 308, 329
BstUI	CGCG	1 cut(s)	302
BstV1I	GCAGC	2 cut(s)	126, 341
BsuI	GTATCC	1 cut(s)	382
BsuRI	GGCC	2 cut(s)	128, 146
BtgI	CCRYGG	1 cut(s)	300
BtsCI	GGATG	2 cut(s)	400, 499
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	3 cut(s)	177, 271, 433
CaiI	CAGNNNCTG	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	154
Cfr42I	CCGCGG	1 cut(s)	303
CviAII	CATG	1 cut(s)	443
DdeI	CTNAG	1 cut(s)	99
EaeI	YGGCCR	2 cut(s)	126, 144
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
EciI	GGCGGA	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	154
FaeI	CATG	1 cut(s)	446
FaiI	YATR	6 cut(s)	293, 316, 318, 351, 362, 444
FatI	CATG	1 cut(s)	442
FauNDI	CATATG	1 cut(s)	316
Fnu4HI	GCNGC	4 cut(s)	9, 115, 300, 330
FokI	GGATG	1 cut(s)	407
Fsp4HI	GCNGC	4 cut(s)	9, 115, 300, 330
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	4 cut(s)	9, 115, 300, 330
HaeIII	GGCC	2 cut(s)	128, 146
Hin1II	CATG	1 cut(s)	446
HincII	GTYRAC	2 cut(s)	64, 106
HindII	GTYRAC	2 cut(s)	64, 106
HpaI	GTTAAC	1 cut(s)	106
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	2 cut(s)	64, 106
Hpy188I	TCNGA	1 cut(s)	212
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	2 cut(s)	64, 106
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	1 cut(s)	28
HpyF10VI	GCNNNNNNNGC	4 cut(s)	254, 275, 308, 329
HpyF3I	CTNAG	1 cut(s)	99
Hsp92II	CATG	1 cut(s)	446
KspAI	GTTAAC	1 cut(s)	106
KspI	CCGCGG	1 cut(s)	303
LmnI	GCTCC	2 cut(s)	275, 316
LpnPI	CCDG	6 cut(s)	72, 189, 255, 368, 429, 445
Lsp1109I	GCAGC	2 cut(s)	126, 341
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	436
MboII	GAAGA	6 cut(s)	43, 215, 422, 458, 479, 488
MhlI	GDGCHC	1 cut(s)	234
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	1 cut(s)	122
MluNI	TGGCCA	1 cut(s)	128
MnlI	CCTC	5 cut(s)	94, 379, 445, 457, 484
Mox20I	TGGCCA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	2 cut(s)	237, 447
Msp20I	TGGCCA	1 cut(s)	128
MspA1I	CMGCKG	3 cut(s)	117, 257, 302
Mva1269I	GAATGC	1 cut(s)	370
MvnI	CGCG	1 cut(s)	302
MwoI	GCNNNNNNNGC	4 cut(s)	254, 275, 308, 329
NdeI	CATATG	1 cut(s)	316
NlaIII	CATG	1 cut(s)	446
NlaIV	GGNNCC	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	436
PctI	GAATGC	1 cut(s)	370
PkrI	GCNGC	4 cut(s)	10, 116, 301, 331
PpuMI	RGGWCCY	1 cut(s)	154
Psp5II	RGGWCCY	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	154
PspPPI	RGGWCCY	1 cut(s)	154
PstNI	CAGNNNCTG	1 cut(s)	98
PvuII	CAGCTG	1 cut(s)	257
RseI	CAYNNNNRTG	2 cut(s)	237, 447
SacII	CCGCGG	1 cut(s)	303
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	4 cut(s)	9, 115, 300, 330
Sau96I	GGNCC	1 cut(s)	154
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	9 cut(s)	78, 105, 250, 259, 271, 313, 325, 334, 418
Sfr303I	CCGCGG	1 cut(s)	303
SgrBI	CCGCGG	1 cut(s)	303
SinI	GGWCC	1 cut(s)	154
SmiMI	CAYNNNNRTG	2 cut(s)	237, 447
Sse9I	AATT	1 cut(s)	122
SsiI	CCGC	4 cut(s)	117, 273, 300, 302
SspMI	CTAG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	28
TasI	AATT	1 cut(s)	122
TauI	GCSGC	1 cut(s)	302
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	3 cut(s)	8, 114, 329
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	7 cut(s)	17, 333, 366, 377, 423, 459, 489
TspGWI	ACGGA	2 cut(s)	359, 407
TspRI	CASTG	1 cut(s)	99
VpaK11BI	GGWCC	1 cut(s)	154
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.