Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0015349

Physical Location & Seq

Genomic Coordinates Reverse (-)

64540695 .. 64541540

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG376700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGATGCTGAGCTGGGTCCAGGACCAGCCGTACTACAAGAGATCCGACGGCTGGGATCACTTCATCACCATGGGCCGGATCACCTGGGACTTCCGCCGCTCCAGGGACCCGGAATGGGGCTCCGGCTGCATGTACAAGCCGGGGATGCGTAACATCACGCGCCTCCTCATCGAGCGGAACCCCTGGGACTACTTCGACGTCGGTGTTCCCTACCCCACCGGATTCCACCCCAGAACTGATGCTGACGTCACGAAGTGGCAGGGCTTCGTCACGAACCGGAACAGAACCAAGCTCTTCTGTTTCGCGGGAGCCAAGCGCAGCCTTATCAGGAACGATTTCCGAGGACTGTTACTGAGTCACTGCCAGAACGAGTCGGACTCGTGCCGGGTCGTGGACTGCGGCGGGTCCAAATGCTCCAACGGCACGTCGGCGATTCTCGAAACGTTTCTCGACTCGGATTTCTGCCTCCAGCCGAGAGGGGATAGCTTCACCCGGAGGTCGATTTTTGACTGCATGGTGGCCGGTTCGATCCCTGTTTTTTTCTGGAAGCGGACCGCGTATTTCCAGTACGAGTGGTTTTTACCGGGCGAACCGGATAGTTACTCAGTTTTCATCGACCGGAACGCCGTAAAAAACGGGACGGCCTCGATAAAAAACGTGCTCGCCGGTTACAGTAGAGAAGAGGTGAGAAAAATGCGGGAGAAAGTCATCGATTACATTCCGAATTTTCTGTATGCAAAACCCCAGGAAGGGTTGGAGACGGTAAAAGACGCTTTTGACATTGCCCTTGAAGGTGTGTTGAGGAGGTTCAAGGAGCAAGGAGAGTGGGGGTTCAAGTGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009250 GO:0009969 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

281

Amino Acids

32.8

Weight (kDa)

8.84

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	3 - 218	7.6e-50	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62220
fragaria_vesca	FvH4_7g28370
malus_domestica	MD01G1187600.v1.1
prunus_persica	Prupe.2G284000_v2.0.a1
pyrus_communis	pycom01g19950
rosa_chinensis	RchiOBHm_Chr1g0375351
rosa_laevigata	RLG00000026669
rosa_multiflora	Rmu_sc0000554.1_g000040 Rmu_ssc0000106.1_g000004
rosa_roxburghii	Rroxscaffold_4G00282820
rosa_rugosa	Rorug01G0390400
rosa_samantha	Rh1AG400900 Rh1BG363400 Rh1CG376700 Rh1DG394200
rosa_wichuraiana	Rw1G035590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	201, 249
AccBSI	CCGCTC	2 cut(s)	99, 175
AccII	CGCG	3 cut(s)	160, 305, 557
AciI	CCGC	9 cut(s)	94, 97, 175, 305, 399, 402, 550, 555, 697
AclI	AACGTT	1 cut(s)	443
AclWI	GGATC	4 cut(s)	36, 63, 86, 523
AcoI	YGGCCR	1 cut(s)	519
AcsI	RAATTY	1 cut(s)	724
AcyI	GRCGYC	2 cut(s)	198, 246
AdeI	CACNNNGTG	1 cut(s)	255
AfaI	GTAC	3 cut(s)	32, 134, 569
AfiI	CCNNNNNNNGG	8 cut(s)	51, 75, 103, 115, 116, 391, 749, 750
AgsI	TTSAA	3 cut(s)	791, 811, 835
AjiI	CACGTC	1 cut(s)	426
AjnI	CCWGG	5 cut(s)	18, 83, 101, 182, 744
AluBI	AGCT	3 cut(s)	12, 292, 486
AluI	AGCT	3 cut(s)	12, 292, 486
Alw21I	GWGCWC	1 cut(s)	663
Alw26I	GTCTC	1 cut(s)	752
AlwI	GGATC	4 cut(s)	36, 63, 86, 523
AoxI	GGCC	3 cut(s)	73, 519, 642
ApeKI	GCWGC	2 cut(s)	126, 318
ApoI	RAATTY	1 cut(s)	724
Asp700I	GAANNNNTTC	2 cut(s)	335, 444
AspLEI	GCGC	2 cut(s)	162, 318
AspS9I	GGNCC	6 cut(s)	16, 22, 73, 106, 405, 552
AsuC2I	CCSGG	5 cut(s)	110, 141, 386, 493, 585
AsuHPI	GGTGA	4 cut(s)	58, 73, 481, 697
AvaII	GGWCC	5 cut(s)	16, 22, 106, 405, 552
BanII	GRGCYC	1 cut(s)	122
BauI	CACGAG	1 cut(s)	379
Bbv12I	GWGCWC	1 cut(s)	663
BbvI	GCAGC	2 cut(s)	113, 330
BceAI	ACGGC	5 cut(s)	13, 64, 436, 611, 657
BciT130I	CCWGG	5 cut(s)	20, 85, 103, 184, 746
BcnI	CCSGG	5 cut(s)	110, 141, 386, 493, 585
BcoDI	GTCTC	1 cut(s)	752
BisI	GCNGC	4 cut(s)	97, 127, 319, 400
BlpI	GCTNAGC	1 cut(s)	8
BlsI	GCNGC	4 cut(s)	98, 128, 320, 401
Bme18I	GGWCC	5 cut(s)	16, 22, 106, 405, 552
BmgBI	CACGTC	1 cut(s)	426
BmgT120I	GGNCC	6 cut(s)	16, 22, 73, 106, 405, 552
BmiI	GGNNCC	7 cut(s)	17, 107, 108, 121, 179, 310, 406
BmsI	GCATC	2 cut(s)	135, 229
BplI	GAGNNNNNCTC	2 cut(s)	362, 394
BpmI	CTGGAG	2 cut(s)	85, 452
Bpu1102I	GCTNAGC	1 cut(s)	8
BpuMI	CCSGG	5 cut(s)	110, 141, 386, 493, 585
Bsa29I	ATCGAT	1 cut(s)	711
BsaHI	GRCGYC	2 cut(s)	198, 246
BsaJI	CCNNGG	8 cut(s)	69, 84, 102, 140, 182, 183, 340, 744
BsaWI	WCCGGW	4 cut(s)	218, 276, 592, 618
Bsc4I	CCNNNNNNNGG	8 cut(s)	51, 75, 103, 115, 116, 391, 749, 750
Bse118I	RCCGGY	2 cut(s)	521, 665
Bse1I	ACTGG	1 cut(s)	565
Bse3DI	GCAATG	1 cut(s)	780
BseBI	CCWGG	5 cut(s)	20, 85, 103, 184, 746
BseCI	ATCGAT	1 cut(s)	711
BseDI	CCNNGG	8 cut(s)	69, 84, 102, 140, 182, 183, 340, 744
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	8 cut(s)	51, 75, 103, 115, 116, 391, 749, 750
BseMI	GCAATG	1 cut(s)	780
BseMII	CTCAG	2 cut(s)	344, 618
BseNI	ACTGG	1 cut(s)	565
BseRI	GAGGAG	2 cut(s)	155, 817
BseXI	GCAGC	2 cut(s)	113, 330
BseYI	CCCAGC	2 cut(s)	12, 51
Bsh1236I	CGCG	3 cut(s)	160, 305, 557
Bsh1285I	CGRYCG	1 cut(s)	619
BshFI	GGCC	3 cut(s)	75, 521, 644
BshVI	ATCGAT	1 cut(s)	711
BsiEI	CGRYCG	1 cut(s)	619
BsiHKAI	GWGCWC	1 cut(s)	663
BslFI	GGGAC	4 cut(s)	101, 119, 200, 652
BslI	CCNNNNNNNGG	8 cut(s)	51, 75, 103, 115, 116, 391, 749, 750
BsmAI	GTCTC	1 cut(s)	752
BsmBI	CGTCTC	1 cut(s)	752
BsmFI	GGGAC	4 cut(s)	101, 119, 200, 652
BsnI	GGCC	3 cut(s)	75, 521, 644
Bsp1286I	GDGCHC	2 cut(s)	122, 663
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	4 cut(s)	41, 55, 78, 528
Bsp1720I	GCTNAGC	1 cut(s)	8
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	9 cut(s)	94, 97, 175, 305, 399, 402, 550, 555, 697
BspANI	GGCC	3 cut(s)	75, 521, 644
BspCNI	CTCAG	2 cut(s)	345, 617
BspDI	ATCGAT	1 cut(s)	711
BspFNI	CGCG	3 cut(s)	160, 305, 557
BspLI	GGNNCC	7 cut(s)	17, 107, 108, 121, 179, 310, 406
BspPI	GGATC	4 cut(s)	36, 63, 86, 523
BspQI	GCTCTTC	1 cut(s)	299
BsrBI	CCGCTC	2 cut(s)	99, 175
BsrDI	GCAATG	1 cut(s)	780
BsrFI	RCCGGY	2 cut(s)	521, 665
BsrGI	TGTACA	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	565
BssAI	RCCGGY	2 cut(s)	521, 665
BssECI	CCNNGG	8 cut(s)	69, 84, 102, 140, 182, 183, 340, 744
BssMI	GATC	4 cut(s)	41, 55, 78, 528
BssNI	GRCGYC	2 cut(s)	198, 246
BssSI	CACGAG	1 cut(s)	379
BssT1I	CCWWGG	1 cut(s)	69
Bst2BI	CACGAG	1 cut(s)	379
Bst2UI	CCWGG	5 cut(s)	20, 85, 103, 184, 746
Bst4CI	ACNGT	3 cut(s)	348, 674, 763
Bst6I	CTCTTC	2 cut(s)	299, 675
BstACI	GRCGYC	2 cut(s)	198, 246
BstAUI	TGTACA	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	663
BstDEI	CTNAG	3 cut(s)	8, 353, 604
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	150
BstFNI	CGCG	3 cut(s)	160, 305, 557
BstHHI	GCGC	2 cut(s)	162, 318
BstKTI	GATC	4 cut(s)	44, 58, 81, 531
BstMAI	GTCTC	1 cut(s)	752
BstMBI	GATC	4 cut(s)	41, 55, 78, 528
BstMCI	CGRYCG	1 cut(s)	619
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 145, 420
BstNI	CCWGG	5 cut(s)	20, 85, 103, 184, 746
BstNSI	RCATGY	1 cut(s)	133
BstUI	CGCG	3 cut(s)	160, 305, 557
BstV1I	GCAGC	2 cut(s)	113, 330
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
Bsu15I	ATCGAT	1 cut(s)	711
BsuRI	GGCC	3 cut(s)	75, 521, 644
BsuTUI	ATCGAT	1 cut(s)	711
BtgI	CCRYGG	1 cut(s)	69
BtrI	CACGTC	1 cut(s)	426
BtsCI	GGATG	1 cut(s)	150
BtsI	GCAGTG	1 cut(s)	358
BtsIMutI	CAGTG	1 cut(s)	358
Cac8I	GCNNGC	1 cut(s)	663
CfoI	GCGC	2 cut(s)	162, 318
Cfr10I	RCCGGY	2 cut(s)	521, 665
Cfr13I	GGNCC	6 cut(s)	16, 22, 73, 106, 405, 552
ClaI	ATCGAT	1 cut(s)	711
CpoI	CGGWCCG	1 cut(s)	552
CseI	GACGC	1 cut(s)	779
Csp6I	GTAC	3 cut(s)	31, 133, 568
CspCI	CAANNNNNGTGG	2 cut(s)	806, 841
CspI	CGGWCCG	1 cut(s)	552
CviAII	CATG	3 cut(s)	70, 130, 514
CviQI	GTAC	3 cut(s)	31, 133, 568
DdeI	CTNAG	3 cut(s)	8, 353, 604
DpnI	GATC	4 cut(s)	43, 57, 80, 530
DpnII	GATC	4 cut(s)	41, 55, 78, 528
DraIII	CACNNNGTG	1 cut(s)	255
EaeI	YGGCCR	1 cut(s)	519
Eam1104I	CTCTTC	2 cut(s)	299, 675
EarI	CTCTTC	2 cut(s)	299, 675
EciI	GGCGGA	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	122
Eco47I	GGWCC	5 cut(s)	16, 22, 106, 405, 552
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRII	CCWGG	5 cut(s)	18, 83, 101, 182, 744
EcoT14I	CCWWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	69
Esp3I	CGTCTC	1 cut(s)	752
FaeI	CATG	3 cut(s)	73, 133, 517
FaiI	YATR	4 cut(s)	71, 131, 515, 735
FaqI	GGGAC	4 cut(s)	101, 119, 200, 652
FatI	CATG	3 cut(s)	69, 129, 513
FauI	CCCGC	3 cut(s)	298, 395, 690
Fnu4HI	GCNGC	4 cut(s)	97, 127, 319, 400
FokI	GGATG	1 cut(s)	157
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	4 cut(s)	97, 127, 319, 400
GlaI	GCGC	2 cut(s)	161, 317
GluI	GCNGC	4 cut(s)	97, 127, 319, 400
GsaI	CCCAGC	2 cut(s)	16, 55
GsuI	CTGGAG	2 cut(s)	85, 452
HaeIII	GGCC	3 cut(s)	75, 521, 644
HgaI	GACGC	1 cut(s)	779
HhaI	GCGC	2 cut(s)	162, 318
Hin1I	GRCGYC	2 cut(s)	198, 246
Hin1II	CATG	3 cut(s)	73, 133, 517
Hin6I	GCGC	2 cut(s)	160, 316
HinP1I	GCGC	2 cut(s)	160, 316
HinfI	GANTC	6 cut(s)	222, 355, 371, 377, 433, 452
HphI	GGTGA	4 cut(s)	58, 73, 481, 697
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	5 cut(s)	46, 341, 376, 457, 723
Hpy188III	TCNNGA	6 cut(s)	250, 271, 328, 437, 449, 544
Hpy8I	GTNNAC	1 cut(s)	394
Hpy99I	CGWCG	4 cut(s)	50, 200, 203, 430
HpyAV	CCTTC	2 cut(s)	743, 785
HpyCH4III	ACNGT	3 cut(s)	348, 674, 763
HpyCH4IV	ACGT	5 cut(s)	198, 246, 425, 443, 657
HpyCH4V	TGCA	3 cut(s)	129, 513, 737
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 145, 420
HpyF3I	CTNAG	3 cut(s)	8, 353, 604
HpySE526I	ACGT	5 cut(s)	198, 246, 425, 443, 657
Hsp92I	GRCGYC	2 cut(s)	198, 246
Hsp92II	CATG	3 cut(s)	73, 133, 517
HspAI	GCGC	2 cut(s)	160, 316
KflI	GGGWCCC	1 cut(s)	106
Kzo9I	GATC	4 cut(s)	41, 55, 78, 528
LguI	GCTCTTC	1 cut(s)	299
LmnI	GCTCC	5 cut(s)	104, 125, 308, 419, 814
Lsp1109I	GCAGC	2 cut(s)	113, 330
LweI	GCATC	2 cut(s)	135, 229
MaeII	ACGT	5 cut(s)	198, 246, 425, 443, 657
MaeIII	GTNAC	7 cut(s)	149, 247, 268, 348, 356, 599, 668
MalI	GATC	4 cut(s)	43, 57, 80, 530
MbiI	CCGCTC	2 cut(s)	99, 175
MboI	GATC	4 cut(s)	41, 55, 78, 528
MboII	GAAGA	2 cut(s)	286, 692
MflI	RGATCY	1 cut(s)	41
MhlI	GDGCHC	2 cut(s)	122, 663
MluCI	AATT	1 cut(s)	724
MlyI	GAGTC	4 cut(s)	364, 371, 380, 446
MmeI	TCCRAC	4 cut(s)	69, 354, 441, 735
MroXI	GAANNNNTTC	2 cut(s)	335, 444
MslI	CAYNNNNRTG	1 cut(s)	68
MvaI	CCWGG	5 cut(s)	20, 85, 103, 184, 746
MvnI	CGCG	3 cut(s)	160, 305, 557
MwoI	GCNNNNNNNGC	3 cut(s)	126, 145, 420
NciI	CCSGG	5 cut(s)	110, 141, 386, 493, 585
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	4 cut(s)	41, 55, 78, 528
NlaIII	CATG	3 cut(s)	73, 133, 517
NlaIV	GGNNCC	7 cut(s)	17, 107, 108, 121, 179, 310, 406
NmeAIII	GCCGAG	1 cut(s)	498
NmuCI	GTSAC	3 cut(s)	247, 268, 356
NspI	RCATGY	1 cut(s)	133
PasI	CCCWGGG	1 cut(s)	183
PciSI	GCTCTTC	1 cut(s)	299
PdmI	GAANNNNTTC	2 cut(s)	335, 444
PfeI	GAWTC	2 cut(s)	222, 433
PfoI	TCCNGGA	1 cut(s)	18
PkrI	GCNGC	4 cut(s)	98, 128, 320, 401
PleI	GAGTC	4 cut(s)	363, 371, 379, 446
PpsI	GAGTC	4 cut(s)	363, 371, 379, 446
PpuMI	RGGWCCY	1 cut(s)	106
Psp1406I	AACGTT	1 cut(s)	443
Psp5II	RGGWCCY	1 cut(s)	106
Psp6I	CCWGG	5 cut(s)	18, 83, 101, 182, 744
PspFI	CCCAGC	2 cut(s)	12, 51
PspGI	CCWGG	5 cut(s)	18, 83, 101, 182, 744
PspN4I	GGNNCC	7 cut(s)	17, 107, 108, 121, 179, 310, 406
PspPI	GGNCC	6 cut(s)	16, 22, 73, 106, 405, 552
PspPPI	RGGWCCY	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	41
RsaI	GTAC	3 cut(s)	32, 134, 569
RsaNI	GTAC	3 cut(s)	31, 133, 568
RseI	CAYNNNNRTG	1 cut(s)	68
Rsr2I	CGGWCCG	1 cut(s)	552
RsrII	CGGWCCG	1 cut(s)	552
SapI	GCTCTTC	1 cut(s)	299
SatI	GCNGC	4 cut(s)	97, 127, 319, 400
Sau3AI	GATC	4 cut(s)	41, 55, 78, 528
Sau96I	GGNCC	6 cut(s)	16, 22, 73, 106, 405, 552
SchI	GAGTC	4 cut(s)	364, 371, 380, 446
SduI	GDGCHC	2 cut(s)	122, 663
SfaNI	GCATC	2 cut(s)	135, 229
SinI	GGWCC	5 cut(s)	16, 22, 106, 405, 552
SmiMI	CAYNNNNRTG	1 cut(s)	68
Sse9I	AATT	1 cut(s)	724
SsiI	CCGC	9 cut(s)	94, 97, 175, 305, 399, 402, 550, 555, 697
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	3 cut(s)	348, 674, 763
TaiI	ACGT	5 cut(s)	201, 249, 428, 446, 660
TaqI	TCGA	9 cut(s)	171, 195, 438, 450, 500, 527, 615, 647, 711
TasI	AATT	1 cut(s)	724
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	2 cut(s)	99, 402
TfiI	GAWTC	2 cut(s)	222, 433
TscAI	CASTG	1 cut(s)	365
TseFI	GTSAC	3 cut(s)	247, 268, 356
TseI	GCWGC	2 cut(s)	126, 318
Tsp45I	GTSAC	3 cut(s)	247, 268, 356
TspDTI	ATGAA	2 cut(s)	52, 601
TspRI	CASTG	1 cut(s)	365
VpaK11BI	GGWCC	5 cut(s)	16, 22, 106, 405, 552
XapI	RAATTY	1 cut(s)	724
XceI	RCATGY	1 cut(s)	133
XmnI	GAANNNNTTC	2 cut(s)	335, 444
ZraI	GACGTC	2 cut(s)	199, 247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.