Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009828

Physical Location & Seq

Genomic Coordinates Reverse (-)

25772848 .. 25775635

Gene Structure 2788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G64460.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGAGACTGGTGCTGGTATAGGTTTGTACCCTTTGCATCGCTGCAAAACCATTTACCTAGTGAGACATGCTCAGGGGATTCACAATGTGGATGGGGAGAAGAATTATAAGGCTTACATGTCTCATGACTACTTTGATGCTGAGTTGACCCAGCTTGGCTGGAAACAGGTAGATAGTTTGCGTAAGCATGTTCATTCCAGTGGACTTCACAAGAAGATCGAACTGGTCATTTCGTCTCCACTGATGAGAACCTTGCAAACTGCTGTTGGTGTTTTTGGTGGAGAGGGCTACACGGATATGAGTGATGTACTACCTCTAATGGTAGCAAATGCAGGAAATAGCAGCCGTGCAGCTATATCGAGTTTAAACTGCCCACCAGTTATTACAGAGGAGTCCTGCAGAGAGCATTTGGGAGTGCATCCATGTGATCAGAGGAGAAGTATCAGCGACTATCAGTTTCTTTTCCCTGCAGTTGACTTTTCACTGATAGAAAGCGAGGAAGACAAGTTATGGAAGGCTGATGTTAGAGAAACGATTGAAGAACTTGCAGCTAGAGGAAAAAAGTTCCTGAACTGGCTATGGACACGGAAAGAAAAAGAGATAGCTATTGTGACACACAGTGGTTTCTTGTTTCACACATTGAATGCACTACAAAACGAGTGTCATCCAGATGTTAAGAAGGAAATTTGCGGCCACTTTGCTAATTGTGAGCTACGTTCAATGGTCATCGTCGATAGAAGTATGTTGGGATCGGACAGTTCGGTGACTGATTATCCAGGAAAGATTCCAAAGGGGATTGATCTTCCAAGTGATGCTGTTGTAGATGATAACAACATCAAAGTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

282

Amino Acids

31.6

Weight (kDa)

5.9

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64460 AT5G64460 AT5G64460 AT5G64460 AT5G64460 AT5G64460 AT5G64460 AT5G64460 AT5G64460 AT5G64460 AT5G64460
malus_domestica	MD05G1050300.v1.1 MD10G1057600.v1.1
prunus_persica	Prupe.8G076400_v2.0.a1 Prupe.8G076400_v2.0.a1 Prupe.8G076400_v2.0.a1 Prupe.8G076400_v2.0.a1 Prupe.8G076400_v2.0.a1 Prupe.8G076400_v2.0.a1 Prupe.8G076400_v2.0.a1
pyrus_communis	pycom10g04440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	108
AciI	CCGC	1 cut(s)	690
AclWI	GGATC	1 cut(s)	757
AcoI	YGGCCR	1 cut(s)	691
AcsI	RAATTY	1 cut(s)	684
AdeI	CACNNNGTG	2 cut(s)	88, 620
AfaI	GTAC	2 cut(s)	29, 309
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	3 cut(s)	539, 643, 720
AjnI	CCWGG	1 cut(s)	775
AluBI	AGCT	5 cut(s)	154, 353, 551, 605, 712
AluI	AGCT	5 cut(s)	154, 353, 551, 605, 712
Alw26I	GTCTC	3 cut(s)	58, 126, 240
AlwI	GGATC	1 cut(s)	757
AoxI	GGCC	1 cut(s)	691
ApeKI	GCWGC	4 cut(s)	42, 342, 350, 548
ApoI	RAATTY	1 cut(s)	684
ArsI	GACNNNNNNTTYG	2 cut(s)	646, 678
AsuHPI	GGTGA	1 cut(s)	775
BbsI	GAAGAC	1 cut(s)	507
BbvI	GCAGC	4 cut(s)	29, 354, 362, 560
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	330
BcgI	CGANNNNNNTGC	2 cut(s)	339, 373
BciT130I	CCWGG	1 cut(s)	777
BclI	TGATCA	1 cut(s)	427
BcoDI	GTCTC	3 cut(s)	58, 126, 240
BfaI	CTAG	2 cut(s)	59, 552
BfmI	CTRYAG	2 cut(s)	397, 468
BisI	GCNGC	5 cut(s)	43, 343, 351, 549, 691
BlsI	GCNGC	5 cut(s)	44, 344, 352, 550, 692
Bme1390I	CCNGG	1 cut(s)	777
BmrFI	CCNGG	1 cut(s)	777
BmsI	GCATC	4 cut(s)	46, 127, 427, 802
BpiI	GAAGAC	1 cut(s)	507
BplI	GAGNNNNNCTC	2 cut(s)	55, 87
Bpu10I	CCTNAGC	1 cut(s)	72
Bse1I	ACTGG	5 cut(s)	13, 198, 228, 377, 578
BseBI	CCWGG	1 cut(s)	777
BseGI	GGATG	3 cut(s)	97, 418, 664
BseMII	CTCAG	2 cut(s)	86, 132
BseNI	ACTGG	5 cut(s)	13, 198, 228, 377, 578
BseRI	GAGGAG	2 cut(s)	404, 448
BseXI	GCAGC	4 cut(s)	29, 354, 362, 560
BseYI	CCCAGC	1 cut(s)	150
BsgI	GTGCAG	1 cut(s)	369
BshFI	GGCC	1 cut(s)	693
BsmAI	GTCTC	3 cut(s)	58, 126, 240
BsmBI	CGTCTC	1 cut(s)	240
BsmI	GAATGC	1 cut(s)	649
BsnI	GGCC	1 cut(s)	693
Bsp143I	GATC	4 cut(s)	216, 427, 749, 799
BspACI	CCGC	1 cut(s)	690
BspANI	GGCC	1 cut(s)	693
BspCNI	CTCAG	2 cut(s)	85, 133
BspHI	TCATGA	1 cut(s)	124
BspMAI	CTGCAG	2 cut(s)	401, 472
BspPI	GGATC	1 cut(s)	757
BsrI	ACTGG	5 cut(s)	13, 198, 228, 377, 578
BssMI	GATC	4 cut(s)	216, 427, 749, 799
Bst2UI	CCWGG	1 cut(s)	777
Bst4CI	ACNGT	2 cut(s)	620, 758
BstDEI	CTNAG	2 cut(s)	72, 141
BstF5I	GGATG	3 cut(s)	97, 418, 664
BstKTI	GATC	4 cut(s)	219, 430, 752, 802
BstMAI	GTCTC	3 cut(s)	58, 126, 240
BstMBI	GATC	4 cut(s)	216, 427, 749, 799
BstNI	CCWGG	1 cut(s)	777
BstNSI	RCATGY	3 cut(s)	71, 121, 191
BstSCI	CCNGG	1 cut(s)	775
BstSFI	CTRYAG	2 cut(s)	397, 468
BstV1I	GCAGC	4 cut(s)	29, 354, 362, 560
BstV2I	GAAGAC	1 cut(s)	507
BsuRI	GGCC	1 cut(s)	693
BtgZI	GCGATG	1 cut(s)	23
BtsCI	GGATG	3 cut(s)	97, 418, 664
BtsIMutI	CAGTG	4 cut(s)	205, 239, 482, 625
CciI	TCATGA	1 cut(s)	124
Csp6I	GTAC	2 cut(s)	28, 308
CviAII	CATG	5 cut(s)	68, 118, 125, 188, 423
CviQI	GTAC	2 cut(s)	28, 308
DdeI	CTNAG	2 cut(s)	72, 141
DpnI	GATC	4 cut(s)	218, 429, 751, 801
DpnII	GATC	4 cut(s)	216, 427, 749, 799
DraI	TTTAAA	1 cut(s)	366
DraIII	CACNNNGTG	2 cut(s)	88, 620
EaeI	YGGCCR	1 cut(s)	691
EcoRII	CCWGG	1 cut(s)	775
Esp3I	CGTCTC	1 cut(s)	240
FaeI	CATG	5 cut(s)	71, 121, 128, 191, 426
FatI	CATG	5 cut(s)	67, 117, 124, 187, 422
FbaI	TGATCA	1 cut(s)	427
Fnu4HI	GCNGC	5 cut(s)	43, 343, 351, 549, 691
FokI	GGATG	3 cut(s)	104, 405, 651
Fsp4HI	GCNGC	5 cut(s)	43, 343, 351, 549, 691
FspBI	CTAG	2 cut(s)	59, 552
GluI	GCNGC	5 cut(s)	43, 343, 351, 549, 691
GsaI	CCCAGC	1 cut(s)	154
HaeIII	GGCC	1 cut(s)	693
Hin1II	CATG	5 cut(s)	71, 121, 128, 191, 426
HincII	GTYRAC	2 cut(s)	147, 475
HindII	GTYRAC	2 cut(s)	147, 475
HinfI	GANTC	3 cut(s)	79, 392, 784
HphI	GGTGA	1 cut(s)	775
Hpy166II	GTNNAC	3 cut(s)	147, 203, 475
Hpy188I	TCNGA	2 cut(s)	432, 754
Hpy188III	TCNNGA	3 cut(s)	125, 568, 668
Hpy8I	GTNNAC	3 cut(s)	147, 203, 475
Hpy99I	CGWCG	1 cut(s)	734
HpyAV	CCTTC	2 cut(s)	508, 673
HpyCH4III	ACNGT	2 cut(s)	620, 758
HpyCH4IV	ACGT	1 cut(s)	715
HpyF3I	CTNAG	2 cut(s)	72, 141
HpySE526I	ACGT	1 cut(s)	715
Hsp92II	CATG	5 cut(s)	71, 121, 128, 191, 426
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	4 cut(s)	216, 427, 749, 799
Lsp1109I	GCAGC	4 cut(s)	29, 354, 362, 560
LweI	GCATC	4 cut(s)	46, 127, 427, 802
MaeI	CTAG	2 cut(s)	59, 552
MaeII	ACGT	1 cut(s)	715
MaeIII	GTNAC	2 cut(s)	610, 763
MalI	GATC	4 cut(s)	218, 429, 751, 801
MboI	GATC	4 cut(s)	216, 427, 749, 799
MboII	GAAGA	5 cut(s)	112, 226, 512, 551, 794
MluCI	AATT	3 cut(s)	103, 684, 703
MlyI	GAGTC	1 cut(s)	401
MnlI	CCTC	6 cut(s)	277, 324, 382, 426, 490, 548
MseI	TTAA	2 cut(s)	365, 675
MslI	CAYNNNNRTG	4 cut(s)	198, 296, 423, 669
MspR9I	CCNGG	1 cut(s)	777
MssI	GTTTAAAC	1 cut(s)	366
Mva1269I	GAATGC	1 cut(s)	649
MvaI	CCWGG	1 cut(s)	777
NdeII	GATC	4 cut(s)	216, 427, 749, 799
NlaIII	CATG	5 cut(s)	71, 121, 128, 191, 426
NmuCI	GTSAC	2 cut(s)	610, 763
NspI	RCATGY	3 cut(s)	71, 121, 191
PagI	TCATGA	1 cut(s)	124
PciI	ACATGT	1 cut(s)	117
PctI	GAATGC	1 cut(s)	649
PfeI	GAWTC	2 cut(s)	79, 784
PfoI	TCCNGGA	1 cut(s)	775
PkrI	GCNGC	5 cut(s)	44, 344, 352, 550, 692
PleI	GAGTC	1 cut(s)	400
PmeI	GTTTAAAC	1 cut(s)	366
PpsI	GAGTC	1 cut(s)	400
PscI	ACATGT	1 cut(s)	117
PsiI	TTATAA	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	775
PspFI	CCCAGC	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	775
PstI	CTGCAG	2 cut(s)	401, 472
RsaI	GTAC	2 cut(s)	29, 309
RsaNI	GTAC	2 cut(s)	28, 308
RseI	CAYNNNNRTG	4 cut(s)	198, 296, 423, 669
SaqAI	TTAA	2 cut(s)	365, 675
SatI	GCNGC	5 cut(s)	43, 343, 351, 549, 691
Sau3AI	GATC	4 cut(s)	216, 427, 749, 799
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	1 cut(s)	777
SfaNI	GCATC	4 cut(s)	46, 127, 427, 802
SfcI	CTRYAG	2 cut(s)	397, 468
SmiMI	CAYNNNNRTG	4 cut(s)	198, 296, 423, 669
Sse9I	AATT	3 cut(s)	103, 684, 703
SsiI	CCGC	1 cut(s)	690
SspMI	CTAG	2 cut(s)	59, 552
StyD4I	CCNGG	1 cut(s)	775
TaaI	ACNGT	2 cut(s)	620, 758
TaiI	ACGT	1 cut(s)	718
TaqI	TCGA	3 cut(s)	219, 359, 732
TasI	AATT	3 cut(s)	103, 684, 703
TatI	WGTACW	1 cut(s)	307
TauI	GCSGC	1 cut(s)	693
TfiI	GAWTC	2 cut(s)	79, 784
Tru1I	TTAA	2 cut(s)	365, 675
Tru9I	TTAA	2 cut(s)	365, 675
TscAI	CASTG	4 cut(s)	205, 246, 489, 625
TseFI	GTSAC	2 cut(s)	610, 763
TseI	GCWGC	4 cut(s)	42, 342, 350, 548
Tsp45I	GTSAC	2 cut(s)	610, 763
TspDTI	ATGAA	1 cut(s)	182
TspGWI	ACGGA	2 cut(s)	308, 601
TspRI	CASTG	4 cut(s)	205, 246, 489, 625
XapI	RAATTY	1 cut(s)	684
XceI	RCATGY	3 cut(s)	71, 121, 191
XspI	CTAG	2 cut(s)	59, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.