Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009828

Physical Location & Seq

Genomic Coordinates Reverse (-)

4660065 .. 4663163

Gene Structure 3099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g04440.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAAACCTGAATATTTTGATGCACAACTTACTCCACTAGGCTGGCAGCAGGTTGATAATTTGCGTAAGCATGTTCATGAATGTGGGCTTTCCAAGAGGATTGAGTTGGTCATCACATCTCCTTTGCTAAGGACTCTGCAAACGGCTGTTGGAGTATTTGGAGGCGAGGGTTACAAGGATGGAATGGACGTACTGCCTCTAATGGTGGAAAATGCAGGAAATAGTGAACGCCCTGCAATTTCAAGTCTCAACTGCCCACCAATCATTGCAGTAGAGCTTTGTCGAGAACATTTGGGCGTTCATCCGTGTGATAGCAGGAGGAATATCAGCGACTATCAGTTTCTATTTCCTGCTGTTAATTTTTCTCTGATAGAAACTGATGAGGATATATTGTGGGAGGCCGATGTGAGGGAGACGACAGAGGAAGTTGCAGCTAGGGGAATGAAATTCATGAACTGGTTGTGGACAAGGAAAGAGAAAGAAATAGCGATTGTTACTCATAACGGGTTCTTGTTTCACACGCTAAATGCACTAGGAAATGATTGTCATCCTTCGATGAAAAAAGAAGTGTCCACACACTTTGCAAATTGCGAACTTCGCTCCATGATCATTGTTGACAGAAGTATGACAGGGTCAGATTTATCAACAACTGATTATCCAGGAAAGATTCCTCCGGGGCTGGATCTCCCTAGTGATGTTGCTGATGAAAAGAAGTGTGAGAAAGAAAAGGTCCGAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

247

Amino Acids

27.72

Weight (kDa)

5.31

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64460 AT5G64460 AT5G64460 AT5G64460 AT5G64460 AT5G64460 AT5G64460 AT5G64460 AT5G64460 AT5G64460 AT5G64460
malus_domestica	MD05G1050300.v1.1 MD10G1057600.v1.1
prunus_persica	Prupe.8G076400_v2.0.a1 Prupe.8G076400_v2.0.a1 Prupe.8G076400_v2.0.a1 Prupe.8G076400_v2.0.a1 Prupe.8G076400_v2.0.a1 Prupe.8G076400_v2.0.a1 Prupe.8G076400_v2.0.a1
pyrus_communis	pycom10g04440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	40
AclWI	GGATC	1 cut(s)	690
AcsI	RAATTY	1 cut(s)	446
AfaI	GTAC	1 cut(s)	192
AfiI	CCNNNNNNNGG	1 cut(s)	408
AgsI	TTSAA	1 cut(s)	243
AjnI	CCWGG	1 cut(s)	658
AluBI	AGCT	2 cut(s)	277, 434
AluI	AGCT	2 cut(s)	277, 434
Alw26I	GTCTC	2 cut(s)	251, 407
AlwI	GGATC	1 cut(s)	690
AoxI	GGCC	1 cut(s)	399
ApeKI	GCWGC	2 cut(s)	46, 431
ApoI	RAATTY	1 cut(s)	446
AspS9I	GGNCC	1 cut(s)	730
AsuC2I	CCSGG	1 cut(s)	675
AvaII	GGWCC	1 cut(s)	730
BbvI	GCAGC	2 cut(s)	58, 443
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	159
BciT130I	CCWGG	1 cut(s)	660
BclI	TGATCA	1 cut(s)	606
BcnI	CCSGG	1 cut(s)	675
BcoDI	GTCTC	2 cut(s)	251, 407
BfaI	CTAG	4 cut(s)	38, 435, 533, 690
BfuAI	ACCTGC	1 cut(s)	40
BisI	GCNGC	2 cut(s)	47, 432
BlsI	GCNGC	2 cut(s)	48, 433
Bme1390I	CCNGG	2 cut(s)	660, 675
Bme18I	GGWCC	1 cut(s)	730
BmgT120I	GGNCC	1 cut(s)	730
BmrFI	CCNGG	2 cut(s)	660, 675
BmsI	GCATC	1 cut(s)	10
Bpu10I	CCTNAGC	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	675
BsaBI	GATNNNNATC	1 cut(s)	546
BsaJI	CCNNGG	1 cut(s)	674
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	1 cut(s)	264
Bse8I	GATNNNNATC	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	660
BseDI	CCNNGG	1 cut(s)	674
BseGI	GGATG	3 cut(s)	184, 301, 547
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMI	GCAATG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	461
BseXI	GCAGC	2 cut(s)	58, 443
BshFI	GGCC	1 cut(s)	401
BsiSI	CCGG	1 cut(s)	674
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmAI	GTCTC	2 cut(s)	251, 407
BsmBI	CGTCTC	1 cut(s)	407
BsnI	GGCC	1 cut(s)	401
Bsp143I	GATC	2 cut(s)	606, 682
BspANI	GGCC	1 cut(s)	401
BspHI	TCATGA	2 cut(s)	76, 450
BspMI	ACCTGC	1 cut(s)	40
BspPI	GGATC	1 cut(s)	690
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	461
BssECI	CCNNGG	1 cut(s)	674
BssMI	GATC	2 cut(s)	606, 682
Bst2UI	CCWGG	1 cut(s)	660
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	2 cut(s)	128, 738
BstF5I	GGATG	3 cut(s)	184, 301, 547
BstKTI	GATC	2 cut(s)	609, 685
BstMAI	GTCTC	2 cut(s)	251, 407
BstMBI	GATC	2 cut(s)	606, 682
BstMWI	GCNNNNNNNGC	1 cut(s)	597
BstNI	CCWGG	1 cut(s)	660
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	2 cut(s)	658, 673
BstV1I	GCAGC	2 cut(s)	58, 443
BstX2I	RGATCY	1 cut(s)	682
BstXI	CCANNNNNNTGG	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	682
BsuRI	GGCC	1 cut(s)	401
BtsCI	GGATG	3 cut(s)	184, 301, 547
BveI	ACCTGC	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	44
CciI	TCATGA	2 cut(s)	76, 450
Cfr13I	GGNCC	1 cut(s)	730
Csp6I	GTAC	1 cut(s)	191
CspCI	CAANNNNNGTGG	2 cut(s)	562, 597
CviAII	CATG	4 cut(s)	71, 77, 451, 604
CviJI	RGCY	7 cut(s)	42, 88, 146, 277, 401, 434, 679
CviKI_1	RGCY	7 cut(s)	42, 88, 146, 277, 401, 434, 679
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	2 cut(s)	128, 738
DpnI	GATC	2 cut(s)	608, 684
DpnII	GATC	2 cut(s)	606, 682
Eco47I	GGWCC	1 cut(s)	730
EcoRII	CCWGG	1 cut(s)	658
Esp3I	CGTCTC	1 cut(s)	407
FaeI	CATG	4 cut(s)	74, 80, 454, 607
FaiI	YATR	7 cut(s)	72, 78, 389, 452, 501, 605, 626
FatI	CATG	4 cut(s)	70, 76, 450, 603
FbaI	TGATCA	1 cut(s)	606
Fnu4HI	GCNGC	2 cut(s)	47, 432
FokI	GGATG	3 cut(s)	191, 288, 534
Fsp4HI	GCNGC	2 cut(s)	47, 432
FspBI	CTAG	4 cut(s)	38, 435, 533, 690
GluI	GCNGC	2 cut(s)	47, 432
HaeIII	GGCC	1 cut(s)	401
HapII	CCGG	1 cut(s)	674
Hin1II	CATG	4 cut(s)	74, 80, 454, 607
HincII	GTYRAC	1 cut(s)	616
HindII	GTYRAC	1 cut(s)	616
HinfI	GANTC	2 cut(s)	133, 667
HpaII	CCGG	1 cut(s)	674
Hpy166II	GTNNAC	4 cut(s)	227, 465, 573, 616
Hpy188I	TCNGA	3 cut(s)	369, 637, 734
Hpy188III	TCNNGA	3 cut(s)	77, 284, 451
Hpy8I	GTNNAC	4 cut(s)	227, 465, 573, 616
HpyAV	CCTTC	1 cut(s)	561
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	8 cut(s)	23, 139, 215, 236, 269, 431, 530, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	597
HpyF3I	CTNAG	2 cut(s)	128, 738
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	4 cut(s)	74, 80, 454, 607
Ksp22I	TGATCA	1 cut(s)	606
Kzo9I	GATC	2 cut(s)	606, 682
LmnI	GCTCC	1 cut(s)	605
Lsp1109I	GCAGC	2 cut(s)	58, 443
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	4 cut(s)	38, 435, 533, 690
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	2 cut(s)	170, 493
MalI	GATC	2 cut(s)	608, 684
MboI	GATC	2 cut(s)	606, 682
MflI	RGATCY	1 cut(s)	682
MluCI	AATT	5 cut(s)	58, 237, 358, 446, 586
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	1 cut(s)	130
MseI	TTAA	1 cut(s)	357
MslI	CAYNNNNRTG	3 cut(s)	75, 81, 306
MspI	CCGG	1 cut(s)	674
MspR9I	CCNGG	2 cut(s)	660, 675
MvaI	CCWGG	1 cut(s)	660
MwoI	GCNNNNNNNGC	1 cut(s)	597
NciI	CCSGG	1 cut(s)	675
NdeII	GATC	2 cut(s)	606, 682
NlaIII	CATG	4 cut(s)	74, 80, 454, 607
NspI	RCATGY	1 cut(s)	74
PagI	TCATGA	2 cut(s)	76, 450
PfeI	GAWTC	1 cut(s)	667
PflFI	GACNNNGTC	1 cut(s)	631
PfoI	TCCNGGA	1 cut(s)	658
PkrI	GCNGC	2 cut(s)	48, 433
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	658
PspGI	CCWGG	1 cut(s)	658
PspPI	GGNCC	1 cut(s)	730
PsuI	RGATCY	1 cut(s)	682
PsyI	GACNNNGTC	1 cut(s)	631
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
RseI	CAYNNNNRTG	3 cut(s)	75, 81, 306
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	2 cut(s)	47, 432
Sau3AI	GATC	2 cut(s)	606, 682
Sau96I	GGNCC	1 cut(s)	730
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	2 cut(s)	660, 675
SetI	ASST	6 cut(s)	10, 54, 192, 279, 436, 732
SfaNI	GCATC	1 cut(s)	10
SinI	GGWCC	1 cut(s)	730
SmiMI	CAYNNNNRTG	3 cut(s)	75, 81, 306
Sse9I	AATT	5 cut(s)	58, 237, 358, 446, 586
SspI	AATATT	1 cut(s)	14
SspMI	CTAG	4 cut(s)	38, 435, 533, 690
StyD4I	CCNGG	2 cut(s)	658, 673
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	2 cut(s)	283, 554
TasI	AATT	5 cut(s)	58, 237, 358, 446, 586
TfiI	GAWTC	1 cut(s)	667
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TseI	GCWGC	2 cut(s)	46, 431
TspDTI	ATGAA	9 cut(s)	17, 65, 93, 290, 439, 458, 467, 572, 720
TspGWI	ACGGA	1 cut(s)	294
Tth111I	GACNNNGTC	1 cut(s)	631
VpaK11BI	GGWCC	1 cut(s)	730
XapI	RAATTY	1 cut(s)	446
XceI	RCATGY	1 cut(s)	74
XspI	CTAG	4 cut(s)	38, 435, 533, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.