AT5G65495

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017150
Physical Location & Seq
Forward (+)
26180421 .. 26181069
649 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G65495.1

Sequence Viewer

Length: 285 bp
ATGTGTTACGGTCACAATCAATCGTTGTCGTCGCGAAGCAGTCTCCGTCGCCGATCGCATGACGGAGAAGATGATTCAGTGGTAGACGATCTTCGAGACCGGCTGGCGGAAACCGAGGCGCGGCTGAGAAGAGCAAGGGCGAGAGAAGCTGAGCTAAGCCGGAGGTTGGAGCATATGAAGAGATTCGTTTCGGTGATGGAGATCATTGAGACTTTCTTGGAAAGACGATTCCAAGAGCAGAAAGATCGAATTGCTCGCCTTTTCTCTCCTGTATCCACGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

11.22

Weight (kDa)

9.97

Isoelectric Point (pI)

93.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017150)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65495
fragaria_vesca FvH4_1g19600
prunus_persica Prupe.6G202300_v2.0.a1
pyrus_communis pycom15g27550
rosa_chinensis RchiOBHm_Chr2g0111151
rosa_laevigata RLG00000017867
rosa_multiflora Rmu_co8122812.1_g000001 Rmu_sc0003795.1_g000009 Rmu_sc0012949.1_g000004
rosa_roxburghii Rroxscaffold_2G00132680
rosa_rugosa Rorug02G0171000
rosa_samantha Rh2DG231700
rosa_wichuraiana Rw2G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 84
AccII CGCG 2 cut(s) 34, 121
AciI CCGC 2 cut(s) 107, 121
AfiI CCNNNNNNNGG 3 cut(s) 106, 120, 166
AluBI AGCT 2 cut(s) 149, 154
AluI AGCT 2 cut(s) 149, 154
Alw26I GTCTC 3 cut(s) 47, 90, 203
Asp700I GAANNNNTTC 1 cut(s) 182
AspLEI GCGC 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 205
BarI GAAGNNNNNNTAC 2 cut(s) 75, 107
BccI CCATC 1 cut(s) 190
BcgI CGANNNNNNTGC 2 cut(s) 227, 261
BciVI GTATCC 1 cut(s) 283
BcoDI GTCTC 3 cut(s) 47, 90, 203
BfuI GTATCC 1 cut(s) 283
BisI GCNGC 1 cut(s) 122
BlpI GCTNAGC 2 cut(s) 150, 155
BlsI GCNGC 1 cut(s) 123
Bpu1102I GCTNAGC 2 cut(s) 150, 155
BsaBI GATNNNNATC 1 cut(s) 200
BsaI GGTCTC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 114
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 120, 166
Bse118I RCCGGY 1 cut(s) 99
Bse8I GATNNNNATC 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 114
BseJI GATNNNNATC 1 cut(s) 200
BseLI CCNNNNNNNGG 3 cut(s) 106, 120, 166
BseMII CTCAG 2 cut(s) 116, 141
Bsh1236I CGCG 2 cut(s) 34, 121
Bsh1285I CGRYCG 1 cut(s) 56
BsiEI CGRYCG 1 cut(s) 56
BsiSI CCGG 2 cut(s) 100, 160
BslI CCNNNNNNNGG 3 cut(s) 106, 120, 166
BsmAI GTCTC 3 cut(s) 47, 90, 203
Bso31I GGTCTC 1 cut(s) 90
Bsp143I GATC 4 cut(s) 53, 88, 201, 244
Bsp1720I GCTNAGC 2 cut(s) 150, 155
Bsp68I TCGCGA 1 cut(s) 34
BspACI CCGC 2 cut(s) 107, 121
BspCNI CTCAG 2 cut(s) 117, 142
BspFNI CGCG 2 cut(s) 34, 121
BspQI GCTCTTC 1 cut(s) 124
BspTNI GGTCTC 1 cut(s) 90
BsrFI RCCGGY 1 cut(s) 99
BssAI RCCGGY 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 4 cut(s) 53, 88, 201, 244
Bst4CI ACNGT 1 cut(s) 11
Bst6I CTCTTC 2 cut(s) 124, 173
BstC8I GCNNGC 2 cut(s) 105, 256
BstDEI CTNAG 3 cut(s) 125, 150, 155
BstFNI CGCG 2 cut(s) 34, 121
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 4 cut(s) 56, 91, 204, 247
BstMAI GTCTC 3 cut(s) 47, 90, 203
BstMBI GATC 4 cut(s) 53, 88, 201, 244
BstMCI CGRYCG 1 cut(s) 56
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstUI CGCG 2 cut(s) 34, 121
BsuI GTATCC 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 84
BtuMI TCGCGA 1 cut(s) 34
Cac8I GCNNGC 2 cut(s) 105, 256
CfoI GCGC 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 99
CviAII CATG 1 cut(s) 59
CviJI RGCY 5 cut(s) 103, 124, 149, 154, 159
CviKI_1 RGCY 5 cut(s) 103, 124, 149, 154, 159
DdeI CTNAG 3 cut(s) 125, 150, 155
DpnI GATC 4 cut(s) 55, 90, 203, 246
DpnII GATC 4 cut(s) 53, 88, 201, 244
Eam1104I CTCTTC 2 cut(s) 124, 173
EarI CTCTTC 2 cut(s) 124, 173
EciI GGCGGA 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 90
FaeI CATG 1 cut(s) 62
FaiI YATR 3 cut(s) 60, 174, 176
FatI CATG 1 cut(s) 58
FauNDI CATATG 1 cut(s) 174
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 122
Fsp4HI GCNGC 1 cut(s) 122
GlaI GCGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 122
HapII CCGG 2 cut(s) 100, 160
HhaI GCGC 1 cut(s) 121
Hin1II CATG 1 cut(s) 62
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HinfI GANTC 3 cut(s) 74, 183, 228
HpaII CCGG 2 cut(s) 100, 160
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 85
Hpy188III TCNNGA 2 cut(s) 33, 95
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 2 cut(s) 34, 51
HpyCH4III ACNGT 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 3 cut(s) 125, 150, 155
Hsp92II CATG 1 cut(s) 62
HspAI GCGC 1 cut(s) 119
Kzo9I GATC 4 cut(s) 53, 88, 201, 244
LguI GCTCTTC 1 cut(s) 124
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 3 cut(s) 89, 113, 173
MaeIII GTNAC 2 cut(s) 5, 11
MalI GATC 4 cut(s) 55, 90, 203, 246
MboI GATC 4 cut(s) 53, 88, 201, 244
MboII GAAGA 4 cut(s) 80, 83, 141, 190
MluCI AATT 1 cut(s) 249
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 2 cut(s) 109, 156
MroXI GAANNNNTTC 1 cut(s) 182
MspI CCGG 2 cut(s) 100, 160
MvnI CGCG 2 cut(s) 34, 121
MwoI GCNNNNNNNGC 1 cut(s) 146
NdeI CATATG 1 cut(s) 174
NdeII GATC 4 cut(s) 53, 88, 201, 244
NlaIII CATG 1 cut(s) 62
NmuCI GTSAC 1 cut(s) 11
NruI TCGCGA 1 cut(s) 34
PciSI GCTCTTC 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 182
PfeI GAWTC 3 cut(s) 74, 183, 228
PkrI GCNGC 1 cut(s) 123
Ple19I CGATCG 1 cut(s) 56
PvuI CGATCG 1 cut(s) 56
RruI TCGCGA 1 cut(s) 34
SapI GCTCTTC 1 cut(s) 124
SatI GCNGC 1 cut(s) 122
Sau3AI GATC 4 cut(s) 53, 88, 201, 244
SetI ASST 3 cut(s) 151, 156, 167
Sse9I AATT 1 cut(s) 249
SsiI CCGC 2 cut(s) 107, 121
TaaI ACNGT 1 cut(s) 11
TaqI TCGA 2 cut(s) 94, 247
TasI AATT 1 cut(s) 249
TauI GCSGC 1 cut(s) 124
TfiI GAWTC 3 cut(s) 74, 183, 228
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 191
TspGWI ACGGA 2 cut(s) 35, 78
TspRI CASTG 1 cut(s) 84
XmiI GTMKAC 1 cut(s) 84
XmnI GAANNNNTTC 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.