Rmu_co8122812.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8122812.1
OG0017150
Physical Location & Seq
Forward (+)
169 .. 459
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8122812.1_g000001.1.cds

Sequence Viewer

Length: 291 bp
atgtgctatggtcagcaacgacccttctcccgggacaccccttcgccaccgcgtgccgtccgatcccccaacgacaacaacgccgtcgccgtcgaagatctgcgcggccgcctcgccgagacggaggcgcgtctcacccgcgctagggctcgcgaggccgagctcaaccgccgcctcgacgagatgaaacgcttcgtttccgtcatggagatcatcgaaacctacctcctccgacgcttccgggagcagcaggattacgtctcccgcctcttctctacctcacgtaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

11.38

Weight (kDa)

10.41

Isoelectric Point (pI)

71.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017150)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65495
fragaria_vesca FvH4_1g19600
prunus_persica Prupe.6G202300_v2.0.a1
pyrus_communis pycom15g27550
rosa_chinensis RchiOBHm_Chr2g0111151
rosa_laevigata RLG00000017867
rosa_multiflora Rmu_co8122812.1_g000001 Rmu_sc0003795.1_g000009 Rmu_sc0012949.1_g000004
rosa_roxburghii Rroxscaffold_2G00132680
rosa_rugosa Rorug02G0171000
rosa_samantha Rh2DG231700
rosa_wichuraiana Rw2G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 52, 105, 130, 141, 153
AciI CCGC 7 cut(s) 50, 105, 109, 139, 169, 172, 265
AclWI GGATC 1 cut(s) 57
AcoI YGGCCR 1 cut(s) 106
AdeI CACNNNGTG 1 cut(s) 53
AfiI CCNNNNNNNGG 3 cut(s) 30, 144, 145
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 3 cut(s) 113, 137, 265
AlwI GGATC 1 cut(s) 57
Ama87I CYCGRG 1 cut(s) 30
AoxI GGCC 2 cut(s) 106, 156
ApeKI GCWGC 1 cut(s) 247
Asp700I GAANNNNTTC 1 cut(s) 191
AspLEI GCGC 3 cut(s) 105, 130, 143
AsuC2I CCSGG 3 cut(s) 31, 32, 242
AsuHPI GGTGA 1 cut(s) 127
AvaI CYCGRG 1 cut(s) 30
BanII GRGCYC 2 cut(s) 151, 165
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 259
BceAI ACGGC 3 cut(s) 41, 68, 74
BcnI CCSGG 3 cut(s) 31, 32, 242
BcoDI GTCTC 3 cut(s) 113, 137, 265
BfaI CTAG 1 cut(s) 144
BglII AGATCT 1 cut(s) 97
BisI GCNGC 4 cut(s) 106, 109, 172, 248
BlsI GCNGC 4 cut(s) 107, 110, 173, 249
Bme1390I CCNGG 3 cut(s) 31, 32, 242
BmeT110I CYCGRG 1 cut(s) 30
BmrFI CCNGG 3 cut(s) 31, 32, 242
BpuMI CCSGG 3 cut(s) 31, 32, 242
BsaAI YACGTR 1 cut(s) 284
BsaJI CCNNGG 1 cut(s) 30
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 144, 145
BseDI CCNNGG 1 cut(s) 30
BseLI CCNNNNNNNGG 3 cut(s) 30, 144, 145
BseRI GAGGAG 1 cut(s) 218
BseX3I CGGCCG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 259
Bsh1236I CGCG 5 cut(s) 52, 105, 130, 141, 153
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 2 cut(s) 108, 158
BsiEI CGRYCG 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 165
BsiHKCI CYCGRG 1 cut(s) 30
BsiSI CCGG 2 cut(s) 31, 241
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 3 cut(s) 30, 144, 145
BsmAI GTCTC 3 cut(s) 113, 137, 265
BsmBI CGTCTC 3 cut(s) 113, 137, 265
BsmFI GGGAC 1 cut(s) 47
BsnI GGCC 2 cut(s) 108, 158
BsoBI CYCGRG 1 cut(s) 30
Bsp1286I GDGCHC 2 cut(s) 151, 165
Bsp143I GATC 3 cut(s) 62, 97, 210
Bsp68I TCGCGA 1 cut(s) 153
BspACI CCGC 7 cut(s) 50, 105, 109, 139, 169, 172, 265
BspANI GGCC 2 cut(s) 108, 158
BspFNI CGCG 5 cut(s) 52, 105, 130, 141, 153
BspPI GGATC 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 3 cut(s) 62, 97, 210
Bst6I CTCTTC 1 cut(s) 275
BstBAI YACGTR 1 cut(s) 284
BstC8I GCNNGC 2 cut(s) 54, 151
BstFNI CGCG 5 cut(s) 52, 105, 130, 141, 153
BstHHI GCGC 3 cut(s) 105, 130, 143
BstKTI GATC 3 cut(s) 65, 100, 213
BstMAI GTCTC 3 cut(s) 113, 137, 265
BstMBI GATC 3 cut(s) 62, 97, 210
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstSCI CCNGG 3 cut(s) 29, 30, 240
BstUI CGCG 5 cut(s) 52, 105, 130, 141, 153
BstV1I GCAGC 1 cut(s) 259
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
BstZI CGGCCG 1 cut(s) 106
BsuRI GGCC 2 cut(s) 108, 158
BtuMI TCGCGA 1 cut(s) 153
Cac8I GCNNGC 2 cut(s) 54, 151
CciNI GCGGCCGC 1 cut(s) 106
CfoI GCGC 3 cut(s) 105, 130, 143
Cfr9I CCCGGG 1 cut(s) 30
CseI GACGC 2 cut(s) 119, 243
CviAII CATG 1 cut(s) 205
CviJI RGCY 4 cut(s) 108, 149, 158, 163
CviKI_1 RGCY 4 cut(s) 108, 149, 158, 163
DpnI GATC 3 cut(s) 64, 99, 212
DpnII GATC 3 cut(s) 62, 97, 210
DraIII CACNNNGTG 1 cut(s) 53
EaeI YGGCCR 1 cut(s) 106
EagI CGGCCG 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
Ecl136II GAGCTC 1 cut(s) 163
EclXI CGGCCG 1 cut(s) 106
Eco24I GRGCYC 2 cut(s) 151, 165
Eco52I CGGCCG 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 163
Eco88I CYCGRG 1 cut(s) 30
EcoICRI GAGCTC 1 cut(s) 163
EcoT38I GRGCYC 2 cut(s) 151, 165
Esp3I CGTCTC 3 cut(s) 113, 137, 265
FaeI CATG 1 cut(s) 208
FaiI YATR 2 cut(s) 9, 206
FaqI GGGAC 1 cut(s) 47
FatI CATG 1 cut(s) 204
FauI CCCGC 2 cut(s) 146, 272
Fnu4HI GCNGC 4 cut(s) 106, 109, 172, 248
FriOI GRGCYC 2 cut(s) 151, 165
Fsp4HI GCNGC 4 cut(s) 106, 109, 172, 248
FspBI CTAG 1 cut(s) 144
GlaI GCGC 3 cut(s) 104, 129, 142
GluI GCNGC 4 cut(s) 106, 109, 172, 248
HaeIII GGCC 2 cut(s) 108, 158
HapII CCGG 2 cut(s) 31, 241
HgaI GACGC 2 cut(s) 119, 243
HhaI GCGC 3 cut(s) 105, 130, 143
Hin1II CATG 1 cut(s) 208
Hin6I GCGC 3 cut(s) 103, 128, 141
HinP1I GCGC 3 cut(s) 103, 128, 141
HpaII CCGG 2 cut(s) 31, 241
HphI GGTGA 1 cut(s) 127
Hpy188I TCNGA 2 cut(s) 62, 233
Hpy188III TCNNGA 1 cut(s) 152
Hpy99I CGWCG 4 cut(s) 89, 95, 182, 237
HpyAV CCTTC 2 cut(s) 34, 51
HpyCH4IV ACGT 2 cut(s) 258, 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpySE526I ACGT 2 cut(s) 258, 283
Hsp92II CATG 1 cut(s) 208
HspAI GCGC 3 cut(s) 103, 128, 141
Kzo9I GATC 3 cut(s) 62, 97, 210
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 3 cut(s) 44, 236, 254
Lsp1109I GCAGC 1 cut(s) 259
MaeI CTAG 1 cut(s) 144
MaeII ACGT 2 cut(s) 258, 283
MalI GATC 3 cut(s) 64, 99, 212
MboI GATC 3 cut(s) 62, 97, 210
MboII GAAGA 2 cut(s) 107, 262
MflI RGATCY 1 cut(s) 97
MhlI GDGCHC 2 cut(s) 151, 165
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 8 cut(s) 118, 122, 148, 185, 236, 239, 278, 289
MroXI GAANNNNTTC 1 cut(s) 191
MspI CCGG 2 cut(s) 31, 241
MspR9I CCNGG 3 cut(s) 31, 32, 242
MvnI CGCG 5 cut(s) 52, 105, 130, 141, 153
MwoI GCNNNNNNNGC 1 cut(s) 155
NciI CCSGG 3 cut(s) 31, 32, 242
NdeII GATC 3 cut(s) 62, 97, 210
NlaIII CATG 1 cut(s) 208
NmeAIII GCCGAG 2 cut(s) 142, 184
NotI GCGGCCGC 1 cut(s) 106
NruI TCGCGA 1 cut(s) 153
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PdmI GAANNNNTTC 1 cut(s) 191
PfoI TCCNGGA 1 cut(s) 240
PkrI GCNGC 4 cut(s) 107, 110, 173, 249
Ppu21I YACGTR 1 cut(s) 284
Psp124BI GAGCTC 1 cut(s) 165
PsuI RGATCY 1 cut(s) 97
RruI TCGCGA 1 cut(s) 153
SacI GAGCTC 1 cut(s) 165
SatI GCNGC 4 cut(s) 106, 109, 172, 248
Sau3AI GATC 3 cut(s) 62, 97, 210
ScrFI CCNGG 3 cut(s) 31, 32, 242
SduI GDGCHC 2 cut(s) 151, 165
SetI ASST 6 cut(s) 165, 224, 228, 261, 281, 286
SmaI CCCGGG 1 cut(s) 32
SsiI CCGC 7 cut(s) 50, 105, 109, 139, 169, 172, 265
SspMI CTAG 1 cut(s) 144
SstI GAGCTC 1 cut(s) 165
StyD4I CCNGG 3 cut(s) 29, 30, 240
TaiI ACGT 2 cut(s) 261, 286
TaqI TCGA 3 cut(s) 93, 177, 216
TauI GCSGC 3 cut(s) 108, 111, 174
TseI GCWGC 1 cut(s) 247
TspDTI ATGAA 1 cut(s) 200
TspGWI ACGGA 2 cut(s) 137, 190
TspMI CCCGGG 1 cut(s) 30
XmaI CCCGGG 1 cut(s) 30
XmnI GAANNNNTTC 1 cut(s) 191
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.