pycom15g27550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0017150
Physical Location & Seq
Reverse (-)
23028784 .. 23029083
300 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g27550.1

Sequence Viewer

Length: 300 bp
ATGTGTTACGGTCAGCAAACACCCCTCTCCAGAGACACCCCGACTCCACCACGCCCTGTCCGACAGCCGAACGAGAACGCGGTGGTGGTCGCAGATCTTCTCGGCCGCCTTGCCCAGACGGAGGCGCGGCTGGAGCGAGCCAGGGCTCGTGAGGCGGAGCTCAGCCGCCGATTGGACGACATGAAACGGTTCGTCTCCGTCATGGAGATCCTCGAAACGTTCCTCAAACGACGCTTCCGCGAGCGACAGGAATACGAATCTCGCCTCTTCTCTCCCTCTCGCCTCTCGTCAGGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.59

Weight (kDa)

10.41

Isoelectric Point (pI)

62.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017150)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65495
fragaria_vesca FvH4_1g19600
prunus_persica Prupe.6G202300_v2.0.a1
pyrus_communis pycom15g27550
rosa_chinensis RchiOBHm_Chr2g0111151
rosa_laevigata RLG00000017867
rosa_multiflora Rmu_co8122812.1_g000001 Rmu_sc0003795.1_g000009 Rmu_sc0012949.1_g000004
rosa_roxburghii Rroxscaffold_2G00132680
rosa_rugosa Rorug02G0171000
rosa_samantha Rh2DG231700
rosa_wichuraiana Rw2G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 80, 127, 240
AciI CCGC 6 cut(s) 80, 106, 127, 155, 166, 238
AclI AACGTT 1 cut(s) 218
AclWI GGATC 1 cut(s) 202
AcoI YGGCCR 1 cut(s) 103
AfiI CCNNNNNNNGG 2 cut(s) 121, 172
AjnI CCWGG 1 cut(s) 140
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 2 cut(s) 27, 199
AlwI GGATC 1 cut(s) 202
AoxI GGCC 1 cut(s) 103
Asp700I GAANNNNTTC 1 cut(s) 188
AspLEI GCGC 1 cut(s) 127
BanII GRGCYC 2 cut(s) 148, 162
BauI CACGAG 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 162
BciT130I CCWGG 1 cut(s) 142
BcoDI GTCTC 2 cut(s) 27, 199
BglII AGATCT 1 cut(s) 94
BisI GCNGC 3 cut(s) 106, 128, 166
BlpI GCTNAGC 1 cut(s) 161
BlsI GCNGC 3 cut(s) 107, 129, 167
Bme1390I CCNGG 1 cut(s) 142
BmrFI CCNGG 1 cut(s) 142
BpmI CTGGAG 2 cut(s) 13, 152
Bpu1102I GCTNAGC 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 28, 58
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 172
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 141
BseLI CCNNNNNNNGG 2 cut(s) 121, 172
BseMII CTCAG 1 cut(s) 175
BseX3I CGGCCG 1 cut(s) 103
Bsh1236I CGCG 3 cut(s) 80, 127, 240
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 1 cut(s) 105
BsiEI CGRYCG 1 cut(s) 106
BsiHKAI GWGCWC 1 cut(s) 162
BslI CCNNNNNNNGG 2 cut(s) 121, 172
BsmAI GTCTC 2 cut(s) 27, 199
BsmBI CGTCTC 1 cut(s) 199
BsnI GGCC 1 cut(s) 105
Bsp1286I GDGCHC 2 cut(s) 148, 162
Bsp143I GATC 2 cut(s) 94, 207
Bsp1720I GCTNAGC 1 cut(s) 161
BspACI CCGC 6 cut(s) 80, 106, 127, 155, 166, 238
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 174
BspFNI CGCG 3 cut(s) 80, 127, 240
BspPI GGATC 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 2 cut(s) 94, 207
BssSI CACGAG 1 cut(s) 147
Bst2BI CACGAG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 142
Bst4CI ACNGT 2 cut(s) 11, 189
Bst6I CTCTTC 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 138, 242
BstDEI CTNAG 1 cut(s) 161
BstFNI CGCG 3 cut(s) 80, 127, 240
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 2 cut(s) 97, 210
BstMAI GTCTC 2 cut(s) 27, 199
BstMBI GATC 2 cut(s) 94, 207
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 2 cut(s) 133, 152
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 140
BstUI CGCG 3 cut(s) 80, 127, 240
BstX2I RGATCY 2 cut(s) 94, 207
BstYI RGATCY 2 cut(s) 94, 207
BstZI CGGCCG 1 cut(s) 103
BsuRI GGCC 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 138, 242
CfoI GCGC 1 cut(s) 127
CseI GACGC 1 cut(s) 240
CviAII CATG 2 cut(s) 181, 202
CviJI RGCY 7 cut(s) 67, 105, 130, 140, 146, 160, 165
CviKI_1 RGCY 7 cut(s) 67, 105, 130, 140, 146, 160, 165
DdeI CTNAG 1 cut(s) 161
DpnI GATC 2 cut(s) 96, 209
DpnII GATC 2 cut(s) 94, 207
EaeI YGGCCR 1 cut(s) 103
EagI CGGCCG 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
EciI GGCGGA 1 cut(s) 170
Ecl136II GAGCTC 1 cut(s) 160
EclXI CGGCCG 1 cut(s) 103
Eco24I GRGCYC 2 cut(s) 148, 162
Eco52I CGGCCG 1 cut(s) 103
Eco53kI GAGCTC 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 140
EcoT38I GRGCYC 2 cut(s) 148, 162
Esp3I CGTCTC 1 cut(s) 199
FaeI CATG 2 cut(s) 184, 205
FaiI YATR 2 cut(s) 182, 203
FatI CATG 2 cut(s) 180, 201
Fnu4HI GCNGC 3 cut(s) 106, 128, 166
FriOI GRGCYC 2 cut(s) 148, 162
Fsp4HI GCNGC 3 cut(s) 106, 128, 166
GlaI GCGC 1 cut(s) 126
GluI GCNGC 3 cut(s) 106, 128, 166
GsuI CTGGAG 2 cut(s) 13, 152
HaeIII GGCC 1 cut(s) 105
HgaI GACGC 1 cut(s) 240
HhaI GCGC 1 cut(s) 127
Hin1II CATG 2 cut(s) 184, 205
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HinfI GANTC 2 cut(s) 43, 257
Hpy188I TCNGA 1 cut(s) 62
Hpy188III TCNNGA 2 cut(s) 30, 149
Hpy99I CGWCG 1 cut(s) 234
HpyCH4III ACNGT 2 cut(s) 11, 189
HpyCH4IV ACGT 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 152
HpyF3I CTNAG 1 cut(s) 161
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 2 cut(s) 184, 205
HspAI GCGC 1 cut(s) 125
Kzo9I GATC 2 cut(s) 94, 207
LmnI GCTCC 2 cut(s) 133, 157
LpnPI CCDG 8 cut(s) 43, 69, 116, 127, 128, 154, 233, 276
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 1 cut(s) 5
MalI GATC 2 cut(s) 96, 209
MboI GATC 2 cut(s) 94, 207
MboII GAAGA 2 cut(s) 89, 259
MflI RGATCY 2 cut(s) 94, 207
MhlI GDGCHC 2 cut(s) 148, 162
MlyI GAGTC 1 cut(s) 37
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 8 cut(s) 35, 115, 145, 221, 233, 275, 286, 293
MroXI GAANNNNTTC 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 142
MvaI CCWGG 1 cut(s) 142
MvnI CGCG 3 cut(s) 80, 127, 240
MwoI GCNNNNNNNGC 2 cut(s) 133, 152
NdeII GATC 2 cut(s) 94, 207
NlaIII CATG 2 cut(s) 184, 205
NmeAIII GCCGAG 1 cut(s) 81
PcsI WCGNNNNNNNCGW 1 cut(s) 58
PdmI GAANNNNTTC 1 cut(s) 188
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 3 cut(s) 107, 129, 167
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
Psp124BI GAGCTC 1 cut(s) 162
Psp1406I AACGTT 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PsuI RGATCY 2 cut(s) 94, 207
SacI GAGCTC 1 cut(s) 162
SatI GCNGC 3 cut(s) 106, 128, 166
Sau3AI GATC 2 cut(s) 94, 207
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 142
SduI GDGCHC 2 cut(s) 148, 162
SetI ASST 2 cut(s) 162, 221
SsiI CCGC 6 cut(s) 80, 106, 127, 155, 166, 238
SstI GAGCTC 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 140
TaaI ACNGT 2 cut(s) 11, 189
TaiI ACGT 1 cut(s) 221
TaqI TCGA 1 cut(s) 213
TauI GCSGC 3 cut(s) 108, 130, 168
TfiI GAWTC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 197
TspGWI ACGGA 2 cut(s) 134, 187
XmnI GAANNNNTTC 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.