FvH4_1g19600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017150
Physical Location & Seq
Reverse (-)
11838694 .. 11841048
2355 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19600.t1

Sequence Viewer

Length: 351 bp
ATGTGCTATGGTCAGCAACGACCCTTCTCCCGAGACACCCCGACCCCGGCACGATCCCCCAACGACCACAACGCCGTCGCCGTCGAAGATCTCCGCGGCCGACTCGCCGATACCGAGGCGCGTCTCATACGCGCTAGGGCTCGCGAGGCCGAGCTCAACCGCCGCCTCGACGAGATGAAACGCTTCGTTTCCGTCATGGAGATCCTCGAAACCTATCTCCGGCGACGATTCCGGGAGCAGCAGGATTACGTCTCCCGCCTCTTCTCTACCTCACGATCAGGAAACAAGGTTTATAACATCAATCCTAATTGGATTTGGAATCACATTCCCTTTTCCTCTTTTCATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.84

Weight (kDa)

10.22

Isoelectric Point (pI)

73.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017150)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65495
fragaria_vesca FvH4_1g19600
prunus_persica Prupe.6G202300_v2.0.a1
pyrus_communis pycom15g27550
rosa_chinensis RchiOBHm_Chr2g0111151
rosa_laevigata RLG00000017867
rosa_multiflora Rmu_co8122812.1_g000001 Rmu_sc0003795.1_g000009 Rmu_sc0012949.1_g000004
rosa_roxburghii Rroxscaffold_2G00132680
rosa_rugosa Rorug02G0171000
rosa_samantha Rh2DG231700
rosa_wichuraiana Rw2G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 294
AccII CGCG 4 cut(s) 96, 121, 132, 144
AciI CCGC 5 cut(s) 94, 96, 160, 163, 256
AclWI GGATC 2 cut(s) 48, 196
AcoI YGGCCR 1 cut(s) 97
AfiI CCNNNNNNNGG 2 cut(s) 46, 219
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 3 cut(s) 27, 128, 256
AlwI GGATC 2 cut(s) 48, 196
Ama87I CYCGRG 1 cut(s) 30
AoxI GGCC 2 cut(s) 97, 147
ApeKI GCWGC 1 cut(s) 238
Asp700I GAANNNNTTC 1 cut(s) 182
AspLEI GCGC 2 cut(s) 121, 134
AsuC2I CCSGG 2 cut(s) 47, 233
AvaI CYCGRG 1 cut(s) 30
BanII GRGCYC 2 cut(s) 142, 156
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 250
BceAI ACGGC 2 cut(s) 59, 65
BcnI CCSGG 2 cut(s) 47, 233
BcoDI GTCTC 3 cut(s) 27, 128, 256
BfaI CTAG 1 cut(s) 135
BglII AGATCT 1 cut(s) 88
BisI GCNGC 3 cut(s) 97, 163, 239
BlsI GCNGC 3 cut(s) 98, 164, 240
Bme1390I CCNGG 2 cut(s) 47, 233
BmeT110I CYCGRG 1 cut(s) 30
BmrFI CCNGG 2 cut(s) 47, 233
BpuMI CCSGG 2 cut(s) 47, 233
BsaJI CCNNGG 3 cut(s) 45, 94, 114
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 219
BseDI CCNNGG 3 cut(s) 45, 94, 114
BseLI CCNNNNNNNGG 2 cut(s) 46, 219
BseX3I CGGCCG 1 cut(s) 97
BseXI GCAGC 1 cut(s) 250
Bsh1236I CGCG 4 cut(s) 96, 121, 132, 144
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 2 cut(s) 99, 149
BsiEI CGRYCG 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 30
BsiSI CCGG 3 cut(s) 47, 220, 232
BslI CCNNNNNNNGG 2 cut(s) 46, 219
BsmAI GTCTC 3 cut(s) 27, 128, 256
BsmBI CGTCTC 2 cut(s) 128, 256
BsnI GGCC 2 cut(s) 99, 149
BsoBI CYCGRG 1 cut(s) 30
Bsp1286I GDGCHC 2 cut(s) 142, 156
Bsp143I GATC 4 cut(s) 53, 88, 201, 275
Bsp68I TCGCGA 1 cut(s) 144
BspACI CCGC 5 cut(s) 94, 96, 160, 163, 256
BspANI GGCC 2 cut(s) 99, 149
BspFNI CGCG 4 cut(s) 96, 121, 132, 144
BspPI GGATC 2 cut(s) 48, 196
BssECI CCNNGG 3 cut(s) 45, 94, 114
BssMI GATC 4 cut(s) 53, 88, 201, 275
Bst6I CTCTTC 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 142
BstDSI CCRYGG 1 cut(s) 94
BstFNI CGCG 4 cut(s) 96, 121, 132, 144
BstHHI GCGC 2 cut(s) 121, 134
BstKTI GATC 4 cut(s) 56, 91, 204, 278
BstMAI GTCTC 3 cut(s) 27, 128, 256
BstMBI GATC 4 cut(s) 53, 88, 201, 275
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstSCI CCNGG 2 cut(s) 45, 231
BstUI CGCG 4 cut(s) 96, 121, 132, 144
BstV1I GCAGC 1 cut(s) 250
BstX2I RGATCY 2 cut(s) 88, 201
BstYI RGATCY 2 cut(s) 88, 201
BstZI CGGCCG 1 cut(s) 97
BsuRI GGCC 2 cut(s) 99, 149
BtgI CCRYGG 1 cut(s) 94
BtuMI TCGCGA 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 142
CfoI GCGC 2 cut(s) 121, 134
Cfr42I CCGCGG 1 cut(s) 97
CseI GACGC 1 cut(s) 110
CviAII CATG 1 cut(s) 196
CviJI RGCY 4 cut(s) 99, 140, 149, 154
CviKI_1 RGCY 4 cut(s) 99, 140, 149, 154
DpnI GATC 4 cut(s) 55, 90, 203, 277
DpnII GATC 4 cut(s) 53, 88, 201, 275
EaeI YGGCCR 1 cut(s) 97
EagI CGGCCG 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Ecl136II GAGCTC 1 cut(s) 154
EclXI CGGCCG 1 cut(s) 97
Eco24I GRGCYC 2 cut(s) 142, 156
Eco52I CGGCCG 1 cut(s) 97
Eco53kI GAGCTC 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 30
EcoICRI GAGCTC 1 cut(s) 154
EcoT38I GRGCYC 2 cut(s) 142, 156
Esp3I CGTCTC 2 cut(s) 128, 256
FaeI CATG 1 cut(s) 199
FaiI YATR 4 cut(s) 9, 128, 197, 294
FatI CATG 1 cut(s) 195
FauI CCCGC 1 cut(s) 263
Fnu4HI GCNGC 3 cut(s) 97, 163, 239
FriOI GRGCYC 2 cut(s) 142, 156
Fsp4HI GCNGC 3 cut(s) 97, 163, 239
FspBI CTAG 1 cut(s) 135
GlaI GCGC 2 cut(s) 120, 133
GluI GCNGC 3 cut(s) 97, 163, 239
HaeIII GGCC 2 cut(s) 99, 149
HapII CCGG 3 cut(s) 47, 220, 232
HgaI GACGC 1 cut(s) 110
HhaI GCGC 2 cut(s) 121, 134
Hin1II CATG 1 cut(s) 199
Hin6I GCGC 2 cut(s) 119, 132
HinP1I GCGC 2 cut(s) 119, 132
HinfI GANTC 3 cut(s) 102, 228, 319
HpaII CCGG 3 cut(s) 47, 220, 232
Hpy188III TCNNGA 4 cut(s) 30, 143, 273, 279
Hpy99I CGWCG 4 cut(s) 80, 86, 173, 228
HpyAV CCTTC 1 cut(s) 34
HpyCH4IV ACGT 1 cut(s) 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 1 cut(s) 199
HspAI GCGC 2 cut(s) 119, 132
KspI CCGCGG 1 cut(s) 97
Kzo9I GATC 4 cut(s) 53, 88, 201, 275
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 5 cut(s) 60, 227, 233, 245, 264
Lsp1109I GCAGC 1 cut(s) 250
MaeI CTAG 1 cut(s) 135
MaeII ACGT 1 cut(s) 249
MalI GATC 4 cut(s) 55, 90, 203, 277
MboI GATC 4 cut(s) 53, 88, 201, 275
MboII GAAGA 2 cut(s) 98, 253
MflI RGATCY 2 cut(s) 88, 201
MhlI GDGCHC 2 cut(s) 142, 156
MluCI AATT 1 cut(s) 307
MlyI GAGTC 1 cut(s) 96
MnlI CCTC 7 cut(s) 109, 139, 176, 215, 269, 280, 346
MroXI GAANNNNTTC 1 cut(s) 182
MspA1I CMGCKG 1 cut(s) 96
MspI CCGG 3 cut(s) 47, 220, 232
MspR9I CCNGG 2 cut(s) 47, 233
MvnI CGCG 4 cut(s) 96, 121, 132, 144
MwoI GCNNNNNNNGC 1 cut(s) 146
NciI CCSGG 2 cut(s) 47, 233
NdeII GATC 4 cut(s) 53, 88, 201, 275
NlaIII CATG 1 cut(s) 199
NmeAIII GCCGAG 1 cut(s) 175
NruI TCGCGA 1 cut(s) 144
PcsI WCGNNNNNNNCGW 2 cut(s) 78, 111
PdmI GAANNNNTTC 1 cut(s) 182
PfeI GAWTC 2 cut(s) 228, 319
PfoI TCCNGGA 1 cut(s) 231
PkrI GCNGC 3 cut(s) 98, 164, 240
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
PsiI TTATAA 1 cut(s) 294
Psp124BI GAGCTC 1 cut(s) 156
PsuI RGATCY 2 cut(s) 88, 201
RruI TCGCGA 1 cut(s) 144
SacI GAGCTC 1 cut(s) 156
SacII CCGCGG 1 cut(s) 97
SatI GCNGC 3 cut(s) 97, 163, 239
Sau3AI GATC 4 cut(s) 53, 88, 201, 275
SchI GAGTC 1 cut(s) 96
ScrFI CCNGG 2 cut(s) 47, 233
SduI GDGCHC 2 cut(s) 142, 156
SetI ASST 5 cut(s) 156, 215, 252, 272, 291
Sfr303I CCGCGG 1 cut(s) 97
SgrBI CCGCGG 1 cut(s) 97
Sse9I AATT 1 cut(s) 307
SsiI CCGC 5 cut(s) 94, 96, 160, 163, 256
SspMI CTAG 1 cut(s) 135
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 2 cut(s) 45, 231
TaiI ACGT 1 cut(s) 252
TaqI TCGA 3 cut(s) 84, 168, 207
TasI AATT 1 cut(s) 307
TauI GCSGC 2 cut(s) 99, 165
TfiI GAWTC 2 cut(s) 228, 319
TseI GCWGC 1 cut(s) 238
TspDTI ATGAA 2 cut(s) 191, 332
TspGWI ACGGA 1 cut(s) 181
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.