Prupe.6G202300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017150
Physical Location & Seq
Forward (+)
21001934 .. 21002767
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G202300.1

Sequence Viewer

Length: 297 bp
ATGTGTTACGGTCAGCAACGACCCTTCTCCAGAGACAACCTGACCCCTACGCGCGTCGTCCGATTGCCGAACGACAACGCGGTTGTGGTCGCAGATCTGCGCGGCCGCCTGGCTGAGACGGAAGCACGGCTGGCGCGAGCCAGGGCTCGGGAAGCAGAGCTCAGCCGCCGCCTCAATGAGATGAAACGATTCGTTTCGGTCATGGAGATCCTCGAAACCTATCTCAAACGTCGCTTCCGCGAGCAGCAAGAATATGTATCTGACCTCTTCTCTCCCTCTCCCCTGTCAAGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.49

Weight (kDa)

10.23

Isoelectric Point (pI)

63.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017150)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65495
fragaria_vesca FvH4_1g19600
prunus_persica Prupe.6G202300_v2.0.a1
pyrus_communis pycom15g27550
rosa_chinensis RchiOBHm_Chr2g0111151
rosa_laevigata RLG00000017867
rosa_multiflora Rmu_co8122812.1_g000001 Rmu_sc0003795.1_g000009 Rmu_sc0012949.1_g000004
rosa_roxburghii Rroxscaffold_2G00132680
rosa_rugosa Rorug02G0171000
rosa_samantha Rh2DG231700
rosa_wichuraiana Rw2G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 6 cut(s) 52, 54, 80, 102, 136, 240
AciI CCGC 6 cut(s) 80, 102, 106, 166, 169, 238
AclWI GGATC 1 cut(s) 202
AcoI YGGCCR 1 cut(s) 103
AfiI CCNNNNNNNGG 1 cut(s) 147
AjnI CCWGG 2 cut(s) 108, 140
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 2 cut(s) 27, 110
AlwI GGATC 1 cut(s) 202
Ama87I CYCGRG 1 cut(s) 147
AoxI GGCC 1 cut(s) 103
ApeKI GCWGC 1 cut(s) 244
Asp700I GAANNNNTTC 1 cut(s) 188
AspLEI GCGC 3 cut(s) 54, 102, 136
AvaI CYCGRG 1 cut(s) 147
BanII GRGCYC 2 cut(s) 148, 162
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 256
BceAI ACGGC 1 cut(s) 143
BciT130I CCWGG 2 cut(s) 110, 142
BcoDI GTCTC 2 cut(s) 27, 110
BglII AGATCT 1 cut(s) 94
BisI GCNGC 5 cut(s) 103, 106, 166, 169, 245
BlpI GCTNAGC 1 cut(s) 161
BlsI GCNGC 5 cut(s) 104, 107, 167, 170, 246
Bme1390I CCNGG 2 cut(s) 110, 142
BmeT110I CYCGRG 1 cut(s) 147
BmrFI CCNGG 2 cut(s) 110, 142
BpmI CTGGAG 1 cut(s) 13
Bpu1102I GCTNAGC 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 141
Bsc4I CCNNNNNNNGG 1 cut(s) 147
BseBI CCWGG 2 cut(s) 110, 142
BseDI CCNNGG 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 147
BseMII CTCAG 2 cut(s) 105, 175
BseX3I CGGCCG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 256
Bsh1236I CGCG 6 cut(s) 52, 54, 80, 102, 136, 240
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 1 cut(s) 105
BsiEI CGRYCG 1 cut(s) 106
BsiHKAI GWGCWC 1 cut(s) 162
BsiHKCI CYCGRG 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 147
BsmAI GTCTC 2 cut(s) 27, 110
BsmBI CGTCTC 1 cut(s) 110
BsnI GGCC 1 cut(s) 105
BsoBI CYCGRG 1 cut(s) 147
Bsp1286I GDGCHC 2 cut(s) 148, 162
Bsp143I GATC 2 cut(s) 94, 207
Bsp1720I GCTNAGC 1 cut(s) 161
BspACI CCGC 6 cut(s) 80, 102, 106, 166, 169, 238
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 2 cut(s) 106, 174
BspFNI CGCG 6 cut(s) 52, 54, 80, 102, 136, 240
BspPI GGATC 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 2 cut(s) 94, 207
Bst2UI CCWGG 2 cut(s) 110, 142
Bst4CI ACNGT 1 cut(s) 11
Bst6I CTCTTC 1 cut(s) 272
BstC8I GCNNGC 3 cut(s) 132, 138, 242
BstDEI CTNAG 2 cut(s) 114, 161
BstFNI CGCG 6 cut(s) 52, 54, 80, 102, 136, 240
BstHHI GCGC 3 cut(s) 54, 102, 136
BstKTI GATC 2 cut(s) 97, 210
BstMAI GTCTC 2 cut(s) 27, 110
BstMBI GATC 2 cut(s) 94, 207
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 2 cut(s) 131, 152
BstNI CCWGG 2 cut(s) 110, 142
BstSCI CCNGG 2 cut(s) 108, 140
BstUI CGCG 6 cut(s) 52, 54, 80, 102, 136, 240
BstV1I GCAGC 1 cut(s) 256
BstX2I RGATCY 2 cut(s) 94, 207
BstYI RGATCY 2 cut(s) 94, 207
BstZI CGGCCG 1 cut(s) 103
BsuRI GGCC 1 cut(s) 105
Cac8I GCNNGC 3 cut(s) 132, 138, 242
CciNI GCGGCCGC 1 cut(s) 103
CfoI GCGC 3 cut(s) 54, 102, 136
CseI GACGC 1 cut(s) 43
CviAII CATG 1 cut(s) 202
CviJI RGCY 7 cut(s) 105, 113, 130, 140, 146, 160, 165
CviKI_1 RGCY 7 cut(s) 105, 113, 130, 140, 146, 160, 165
DdeI CTNAG 2 cut(s) 114, 161
DpnI GATC 2 cut(s) 96, 209
DpnII GATC 2 cut(s) 94, 207
EaeI YGGCCR 1 cut(s) 103
EagI CGGCCG 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Ecl136II GAGCTC 1 cut(s) 160
EclXI CGGCCG 1 cut(s) 103
Eco24I GRGCYC 2 cut(s) 148, 162
Eco52I CGGCCG 1 cut(s) 103
Eco53kI GAGCTC 1 cut(s) 160
Eco88I CYCGRG 1 cut(s) 147
EcoICRI GAGCTC 1 cut(s) 160
EcoRII CCWGG 2 cut(s) 108, 140
EcoT38I GRGCYC 2 cut(s) 148, 162
Esp3I CGTCTC 1 cut(s) 110
FaeI CATG 1 cut(s) 205
FaiI YATR 2 cut(s) 203, 255
FatI CATG 1 cut(s) 201
Fnu4HI GCNGC 5 cut(s) 103, 106, 166, 169, 245
FriOI GRGCYC 2 cut(s) 148, 162
Fsp4HI GCNGC 5 cut(s) 103, 106, 166, 169, 245
GlaI GCGC 3 cut(s) 53, 101, 135
GluI GCNGC 5 cut(s) 103, 106, 166, 169, 245
GsuI CTGGAG 1 cut(s) 13
HaeIII GGCC 1 cut(s) 105
HgaI GACGC 1 cut(s) 43
HhaI GCGC 3 cut(s) 54, 102, 136
Hin1II CATG 1 cut(s) 205
Hin6I GCGC 3 cut(s) 52, 100, 134
HinP1I GCGC 3 cut(s) 52, 100, 134
HinfI GANTC 1 cut(s) 189
Hpy188I TCNGA 2 cut(s) 62, 262
Hpy188III TCNNGA 2 cut(s) 30, 149
Hpy99I CGWCG 2 cut(s) 59, 234
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4IV ACGT 1 cut(s) 229
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 152
HpyF3I CTNAG 2 cut(s) 114, 161
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 1 cut(s) 205
HspAI GCGC 3 cut(s) 52, 100, 134
Kzo9I GATC 2 cut(s) 94, 207
LpnPI CCDG 7 cut(s) 43, 53, 95, 116, 122, 127, 154
Lsp1109I GCAGC 1 cut(s) 256
MaeII ACGT 1 cut(s) 229
MaeIII GTNAC 1 cut(s) 5
MalI GATC 2 cut(s) 96, 209
MboI GATC 2 cut(s) 94, 207
MboII GAAGA 1 cut(s) 259
MflI RGATCY 2 cut(s) 94, 207
MhlI GDGCHC 2 cut(s) 148, 162
MnlI CCTC 4 cut(s) 182, 221, 275, 286
MroXI GAANNNNTTC 1 cut(s) 188
MspR9I CCNGG 2 cut(s) 110, 142
MvaI CCWGG 2 cut(s) 110, 142
MvnI CGCG 6 cut(s) 52, 54, 80, 102, 136, 240
MwoI GCNNNNNNNGC 2 cut(s) 131, 152
NdeII GATC 2 cut(s) 94, 207
NlaIII CATG 1 cut(s) 205
NotI GCGGCCGC 1 cut(s) 103
PcsI WCGNNNNNNNCGW 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 188
PfeI GAWTC 1 cut(s) 189
PkrI GCNGC 5 cut(s) 104, 107, 167, 170, 246
Psp124BI GAGCTC 1 cut(s) 162
Psp6I CCWGG 2 cut(s) 108, 140
PspGI CCWGG 2 cut(s) 108, 140
PsuI RGATCY 2 cut(s) 94, 207
SacI GAGCTC 1 cut(s) 162
SatI GCNGC 5 cut(s) 103, 106, 166, 169, 245
Sau3AI GATC 2 cut(s) 94, 207
ScrFI CCNGG 2 cut(s) 110, 142
SduI GDGCHC 2 cut(s) 148, 162
SetI ASST 5 cut(s) 42, 162, 221, 232, 267
SsiI CCGC 6 cut(s) 80, 102, 106, 166, 169, 238
SstI GAGCTC 1 cut(s) 162
StyD4I CCNGG 2 cut(s) 108, 140
TaaI ACNGT 1 cut(s) 11
TaiI ACGT 1 cut(s) 232
TaqI TCGA 1 cut(s) 213
TaqII GACCGA 1 cut(s) 187
TauI GCSGC 4 cut(s) 105, 108, 168, 171
TfiI GAWTC 1 cut(s) 189
TseI GCWGC 1 cut(s) 244
TspDTI ATGAA 1 cut(s) 197
TspGWI ACGGA 1 cut(s) 134
XmnI GAANNNNTTC 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.