AT5G65613

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017549
Physical Location & Seq
Reverse (-)
26220644 .. 26220985
342 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G65613.1

Sequence Viewer

Length: 342 bp
ATGGATAGAGTTCTCGCCGACAACCGTAGACAATCGTACTCCACCGGTCGATGCTTGAGTTCGCCGTTATCTTGTCTCATCCATACAGAAGAAACAGAGTACGCTCGAATCAGTAACCACAACAACAAGACAAGACCTAGTCCGAAGTTAAGGGATTTGATGAGAAGATTATTATTGGTTAGAAGTTGCGGATTGGAGAATAATAAATCGAAAACGTTAGTTACGTTTCACTACGATGCTGTGAGCTATTCGCAGAATTTCGATGATGGTTTCTATCTGCGCGATGCCGATGATGATCCTAAGCTTTTTAGAGATCTTCCAAAACAGAGTCCGGATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.16

Weight (kDa)

8.49

Isoelectric Point (pI)

86.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65613
fragaria_vesca FvH4_1g19100
prunus_persica Prupe.6G209000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0110091
rosa_laevigata RLG00000017786
rosa_roxburghii Rroxscaffold_2G00133730
rosa_rugosa Rorug02G0165600
rosa_samantha Rh2AG217400 Rh2BG227600 Rh2CG219600 Rh2DG223100
rosa_wichuraiana Rw2G016800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 28
AccII CGCG 1 cut(s) 282
AccIII TCCGGA 1 cut(s) 331
AciI CCGC 1 cut(s) 189
AclI AACGTT 1 cut(s) 215
AclWI GGATC 1 cut(s) 290
AcsI RAATTY 1 cut(s) 256
AfaI GTAC 2 cut(s) 38, 101
AgeI ACCGGT 1 cut(s) 44
AluBI AGCT 2 cut(s) 246, 304
AluI AGCT 2 cut(s) 246, 304
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 1 cut(s) 290
Aor13HI TCCGGA 1 cut(s) 331
ApoI RAATTY 1 cut(s) 256
AsiGI ACCGGT 1 cut(s) 44
AspLEI GCGC 1 cut(s) 282
BccI CCATC 1 cut(s) 260
BceAI ACGGC 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 1 cut(s) 138
BglII AGATCT 1 cut(s) 313
BmsI GCATC 3 cut(s) 41, 226, 274
Bpu10I CCTNAGC 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 76
BsaBI GATNNNNATC 1 cut(s) 294
BsaWI WCCGGW 2 cut(s) 44, 331
Bse118I RCCGGY 1 cut(s) 44
Bse8I GATNNNNATC 1 cut(s) 294
BseAI TCCGGA 1 cut(s) 331
BseGI GGATG 1 cut(s) 78
BseJI GATNNNNATC 1 cut(s) 294
Bsh1236I CGCG 1 cut(s) 282
Bsh1285I CGRYCG 1 cut(s) 49
BshTI ACCGGT 1 cut(s) 44
BsiEI CGRYCG 1 cut(s) 49
BsiSI CCGG 2 cut(s) 45, 332
BsmAI GTCTC 1 cut(s) 80
Bsp13I TCCGGA 1 cut(s) 331
Bsp143I GATC 3 cut(s) 295, 313, 334
BspACI CCGC 1 cut(s) 189
BspEI TCCGGA 1 cut(s) 331
BspFNI CGCG 1 cut(s) 282
BspPI GGATC 1 cut(s) 290
BsrFI RCCGGY 1 cut(s) 44
BssAI RCCGGY 1 cut(s) 44
BssMI GATC 3 cut(s) 295, 313, 334
Bst4CI ACNGT 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 300
BstF5I GGATG 1 cut(s) 78
BstFNI CGCG 1 cut(s) 282
BstHHI GCGC 1 cut(s) 282
BstKTI GATC 3 cut(s) 298, 316, 337
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 3 cut(s) 295, 313, 334
BstMCI CGRYCG 1 cut(s) 49
BstUI CGCG 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BtgZI GCGATG 1 cut(s) 297
BtsCI GGATG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 337
CfoI GCGC 1 cut(s) 282
Cfr10I RCCGGY 1 cut(s) 44
Csp6I GTAC 2 cut(s) 37, 100
CspAI ACCGGT 1 cut(s) 44
CviJI RGCY 2 cut(s) 246, 304
CviKI_1 RGCY 2 cut(s) 246, 304
CviQI GTAC 2 cut(s) 37, 100
DdeI CTNAG 1 cut(s) 300
DpnI GATC 3 cut(s) 297, 315, 336
DpnII GATC 3 cut(s) 295, 313, 334
FaiI YATR 1 cut(s) 84
FblI GTMKAC 1 cut(s) 28
FokI GGATG 1 cut(s) 65
FspBI CTAG 1 cut(s) 138
GlaI GCGC 1 cut(s) 281
HapII CCGG 2 cut(s) 45, 332
HhaI GCGC 1 cut(s) 282
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 2 cut(s) 108, 328
HpaII CCGG 2 cut(s) 45, 332
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 332
Hpy8I GTNNAC 1 cut(s) 29
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4IV ACGT 2 cut(s) 215, 224
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 2 cut(s) 215, 224
HspAI GCGC 1 cut(s) 280
Kpn2I TCCGGA 1 cut(s) 331
Kzo9I GATC 3 cut(s) 295, 313, 334
LpnPI CCDG 1 cut(s) 58
LweI GCATC 3 cut(s) 41, 226, 274
MaeI CTAG 1 cut(s) 138
MaeII ACGT 2 cut(s) 215, 224
MaeIII GTNAC 2 cut(s) 113, 220
MalI GATC 3 cut(s) 297, 315, 336
MboI GATC 3 cut(s) 295, 313, 334
MboII GAAGA 3 cut(s) 101, 177, 308
MflI RGATCY 1 cut(s) 313
MluCI AATT 1 cut(s) 256
MlyI GAGTC 1 cut(s) 337
MroI TCCGGA 1 cut(s) 331
MseI TTAA 1 cut(s) 149
MslI CAYNNNNRTG 1 cut(s) 234
MspI CCGG 2 cut(s) 45, 332
MvnI CGCG 1 cut(s) 282
NdeII GATC 3 cut(s) 295, 313, 334
PcsI WCGNNNNNNNCGW 1 cut(s) 221
PfeI GAWTC 1 cut(s) 108
PflFI GACNNNGTC 1 cut(s) 138
PinAI ACCGGT 1 cut(s) 44
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
Psp1406I AACGTT 1 cut(s) 215
PsuI RGATCY 1 cut(s) 313
PsyI GACNNNGTC 1 cut(s) 138
RsaI GTAC 2 cut(s) 38, 101
RsaNI GTAC 2 cut(s) 37, 100
RseI CAYNNNNRTG 1 cut(s) 234
SaqAI TTAA 1 cut(s) 149
Sau3AI GATC 3 cut(s) 295, 313, 334
SchI GAGTC 1 cut(s) 337
SetI ASST 5 cut(s) 139, 218, 227, 248, 306
SfaNI GCATC 3 cut(s) 41, 226, 274
SgeI CNNG 9 cut(s) 26, 57, 67, 84, 117, 139, 144, 150, 293
SmiMI CAYNNNNRTG 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
Sse9I AATT 1 cut(s) 256
SsiI CCGC 1 cut(s) 189
SspMI CTAG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 26
TaiI ACGT 2 cut(s) 218, 227
TaqI TCGA 4 cut(s) 49, 106, 209, 261
TasI AATT 1 cut(s) 256
TfiI GAWTC 1 cut(s) 108
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
Tth111I GACNNNGTC 1 cut(s) 138
XapI RAATTY 1 cut(s) 256
XmiI GTMKAC 1 cut(s) 28
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.