FvH4_1g19100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017549
Physical Location & Seq
Forward (+)
11313790 .. 11315167
1378 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19100.t1

Sequence Viewer

Length: 357 bp
ATGGAAGGGGATCTCATCCCTCCCCGGCGATCGACTTACCTTCCGGGGTGCATGATGTCGCCGTCGTGTTTCCCGGTGCACGAAGAATTGGGGTACAGTCGCATGGAGAGCTGTGGTGAAAACAAGAGAAGCCCGAGGAGATGGAGAAACTTTCTCAGGAGGTTGGTGATGAGCGATGGGGGCAGAAGAAGAAGAATTAGAAGCATATATGGATCAAGCAAAGCTGTGTCGTTTCAGTATGATGCGGTGAGCTATTCGCAGAACTTCGACGATGGGTGTCACTTGTATGAAGAAGAGCCCGGACGCCGTTCACAAGTGTTTAACAATGTCAGATGGGACGGTGATCTAGATCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.86

Weight (kDa)

9.07

Isoelectric Point (pI)

123.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65613
fragaria_vesca FvH4_1g19100
prunus_persica Prupe.6G209000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0110091
rosa_laevigata RLG00000017786
rosa_roxburghii Rroxscaffold_2G00133730
rosa_rugosa Rorug02G0165600
rosa_samantha Rh2AG217400 Rh2BG227600 Rh2CG219600 Rh2DG223100
rosa_wichuraiana Rw2G016800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 245
AclWI GGATC 2 cut(s) 18, 220
AcyI GRCGYC 1 cut(s) 304
AfaI GTAC 1 cut(s) 95
AluBI AGCT 3 cut(s) 111, 224, 252
AluI AGCT 3 cut(s) 111, 224, 252
Alw21I GWGCWC 1 cut(s) 81
Alw44I GTGCAC 1 cut(s) 77
AlwI GGATC 2 cut(s) 18, 220
Ama87I CYCGRG 1 cut(s) 133
ApaLI GTGCAC 1 cut(s) 77
AsuC2I CCSGG 4 cut(s) 25, 45, 74, 300
AsuHPI GGTGA 4 cut(s) 128, 178, 259, 353
AvaI CYCGRG 1 cut(s) 133
BaeGI GKGCMC 1 cut(s) 81
BanII GRGCYC 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 81
BccI CCATC 4 cut(s) 135, 170, 266, 327
BceAI ACGGC 2 cut(s) 46, 291
BcnI CCSGG 4 cut(s) 25, 45, 74, 300
BfaI CTAG 1 cut(s) 347
Bme1390I CCNGG 4 cut(s) 25, 45, 74, 300
BmeT110I CYCGRG 1 cut(s) 133
BmrFI CCNGG 4 cut(s) 25, 45, 74, 300
BmsI GCATC 1 cut(s) 232
BpuMI CCSGG 4 cut(s) 25, 45, 74, 300
BsaBI GATNNNNATC 1 cut(s) 348
BsaHI GRCGYC 1 cut(s) 304
BsaJI CCNNGG 3 cut(s) 23, 44, 134
Bse8I GATNNNNATC 1 cut(s) 348
BseDI CCNNGG 3 cut(s) 23, 44, 134
BseGI GGATG 1 cut(s) 15
BseJI GATNNNNATC 1 cut(s) 348
BseMII CTCAG 1 cut(s) 169
BseRI GAGGAG 1 cut(s) 151
BseSI GKGCMC 1 cut(s) 81
Bsh1285I CGRYCG 1 cut(s) 32
BsiEI CGRYCG 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 133
BsiSI CCGG 4 cut(s) 25, 44, 74, 300
BslFI GGGAC 1 cut(s) 350
BsmFI GGGAC 1 cut(s) 350
BsoBI CYCGRG 1 cut(s) 133
Bsp1286I GDGCHC 2 cut(s) 81, 300
Bsp143I GATC 5 cut(s) 10, 29, 212, 343, 349
BspACI CCGC 1 cut(s) 245
BspCNI CTCAG 1 cut(s) 168
BspPI GGATC 2 cut(s) 18, 220
BspQI GCTCTTC 1 cut(s) 288
BssECI CCNNGG 3 cut(s) 23, 44, 134
BssMI GATC 5 cut(s) 10, 29, 212, 343, 349
BssNI GRCGYC 1 cut(s) 304
Bst4CI ACNGT 2 cut(s) 98, 341
Bst6I CTCTTC 1 cut(s) 288
BstACI GRCGYC 1 cut(s) 304
BstDEI CTNAG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 15
BstKTI GATC 5 cut(s) 13, 32, 215, 346, 352
BstMBI GATC 5 cut(s) 10, 29, 212, 343, 349
BstMCI CGRYCG 1 cut(s) 32
BstMWI GCNNNNNNNGC 2 cut(s) 108, 180
BstSCI CCNGG 4 cut(s) 23, 43, 72, 298
BstSLI GKGCMC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BtgZI GCGATG 1 cut(s) 189
BtsCI GGATG 1 cut(s) 15
CseI GACGC 1 cut(s) 312
Csp6I GTAC 1 cut(s) 94
CviAII CATG 2 cut(s) 52, 103
CviJI RGCY 5 cut(s) 111, 132, 224, 252, 298
CviKI_1 RGCY 5 cut(s) 111, 132, 224, 252, 298
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 1 cut(s) 155
DpnI GATC 5 cut(s) 12, 31, 214, 345, 351
DpnII GATC 5 cut(s) 10, 29, 212, 343, 349
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 300
Eco88I CYCGRG 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 300
FaeI CATG 2 cut(s) 55, 106
FaiI YATR 7 cut(s) 53, 104, 206, 208, 210, 240, 288
FaqI GGGAC 1 cut(s) 350
FatI CATG 2 cut(s) 51, 102
FokI GGATG 1 cut(s) 2
FriOI GRGCYC 1 cut(s) 300
FspBI CTAG 1 cut(s) 347
HapII CCGG 4 cut(s) 25, 44, 74, 300
HgaI GACGC 1 cut(s) 312
Hin1I GRCGYC 1 cut(s) 304
Hin1II CATG 2 cut(s) 55, 106
HpaII CCGG 4 cut(s) 25, 44, 74, 300
HphI GGTGA 4 cut(s) 128, 178, 259, 353
Hpy166II GTNNAC 2 cut(s) 79, 311
Hpy188I TCNGA 1 cut(s) 332
Hpy188III TCNNGA 2 cut(s) 157, 347
Hpy8I GTNNAC 2 cut(s) 79, 311
Hpy99I CGWCG 2 cut(s) 67, 272
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 2 cut(s) 98, 341
HpyCH4V TGCA 2 cut(s) 51, 79
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 180
HpyF3I CTNAG 1 cut(s) 155
Hsp92I GRCGYC 1 cut(s) 304
Hsp92II CATG 2 cut(s) 55, 106
Kzo9I GATC 5 cut(s) 10, 29, 212, 343, 349
LguI GCTCTTC 1 cut(s) 288
LpnPI CCDG 5 cut(s) 38, 57, 87, 142, 313
LweI GCATC 1 cut(s) 232
MaeI CTAG 1 cut(s) 347
MaeIII GTNAC 1 cut(s) 278
MalI GATC 5 cut(s) 12, 31, 214, 345, 351
MboI GATC 5 cut(s) 10, 29, 212, 343, 349
MboII GAAGA 6 cut(s) 95, 198, 201, 204, 302, 305
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 2 cut(s) 81, 300
MluCI AATT 2 cut(s) 86, 195
MnlI CCTC 3 cut(s) 30, 129, 153
MseI TTAA 1 cut(s) 321
MslI CAYNNNNRTG 1 cut(s) 285
MspI CCGG 4 cut(s) 25, 44, 74, 300
MspR9I CCNGG 4 cut(s) 25, 45, 74, 300
MwoI GCNNNNNNNGC 2 cut(s) 108, 180
NciI CCSGG 4 cut(s) 25, 45, 74, 300
NdeII GATC 5 cut(s) 10, 29, 212, 343, 349
NlaIII CATG 2 cut(s) 55, 106
NmuCI GTSAC 1 cut(s) 278
PciSI GCTCTTC 1 cut(s) 288
Ple19I CGATCG 1 cut(s) 32
PsuI RGATCY 1 cut(s) 10
PvuI CGATCG 1 cut(s) 32
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 285
SapI GCTCTTC 1 cut(s) 288
SaqAI TTAA 1 cut(s) 321
Sau3AI GATC 5 cut(s) 10, 29, 212, 343, 349
ScrFI CCNGG 4 cut(s) 25, 45, 74, 300
SduI GDGCHC 2 cut(s) 81, 300
SetI ASST 5 cut(s) 42, 113, 164, 226, 254
SfaNI GCATC 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 285
Sse9I AATT 2 cut(s) 86, 195
SsiI CCGC 1 cut(s) 245
SspMI CTAG 1 cut(s) 347
StyD4I CCNGG 4 cut(s) 23, 43, 72, 298
TaaI ACNGT 2 cut(s) 98, 341
TaqI TCGA 2 cut(s) 32, 267
TasI AATT 2 cut(s) 86, 195
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TseFI GTSAC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 1 cut(s) 303
VneI GTGCAC 1 cut(s) 77
XbaI TCTAGA 1 cut(s) 346
XspI CTAG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.