Rh2BG227600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0017549
Physical Location & Seq
Forward (+)
22171436 .. 22179059
7624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG227600.1

Sequence Viewer

Length: 318 bp
ATGGAGGGGGATCTTCCTCCCAGGCGATCGACTTACCTTCCGGGGTGCATGATGTCGCCGTCGTGCTTCCCGGTGCAGGAAGAAATGGGATACACTCGCATGGAGAGCTGTGGCGAAAACAAGAGAAGCCGGAGATGGCGAAGCTTTCTCAGGAGAATGGTGAGCGATAGGCGCAGAAGCAGAAGCATATATGGATCAAGCAAAGCTGTGTCATTTCAGTATGATGCGGTGAGCTATTCGCAGAACTTCGACGAAGGGTGTCACTTGTACGAAGAGCCCGGACGCCGTTCAAAAGTGTTTAACGATGTCAGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.26

Weight (kDa)

9.26

Isoelectric Point (pI)

126.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65613
fragaria_vesca FvH4_1g19100
prunus_persica Prupe.6G209000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0110091
rosa_laevigata RLG00000017786
rosa_roxburghii Rroxscaffold_2G00133730
rosa_rugosa Rorug02G0165600
rosa_samantha Rh2AG217400 Rh2BG227600 Rh2CG219600 Rh2DG223100
rosa_wichuraiana Rw2G016800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 227
AclWI GGATC 2 cut(s) 18, 202
AcyI GRCGYC 1 cut(s) 283
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 1 cut(s) 291
AjnI CCWGG 1 cut(s) 20
AluBI AGCT 4 cut(s) 108, 144, 206, 234
AluI AGCT 4 cut(s) 108, 144, 206, 234
AlwI GGATC 2 cut(s) 18, 202
AlwNI CAGNNNCTG 1 cut(s) 315
AspLEI GCGC 1 cut(s) 174
AsuC2I CCSGG 3 cut(s) 42, 71, 279
AsuHPI GGTGA 2 cut(s) 172, 241
BanII GRGCYC 1 cut(s) 279
BccI CCATC 1 cut(s) 129
BceAI ACGGC 2 cut(s) 43, 270
BciT130I CCWGG 1 cut(s) 22
BciVI GTATCC 1 cut(s) 83
BcnI CCSGG 3 cut(s) 42, 71, 279
BfuI GTATCC 1 cut(s) 83
Bme1390I CCNGG 4 cut(s) 22, 42, 71, 279
BmrFI CCNGG 4 cut(s) 22, 42, 71, 279
BmsI GCATC 1 cut(s) 214
BpuMI CCSGG 3 cut(s) 42, 71, 279
BsaHI GRCGYC 1 cut(s) 283
BsaJI CCNNGG 2 cut(s) 20, 41
Bsc4I CCNNNNNNNGG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 22
BseDI CCNNGG 2 cut(s) 20, 41
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 163
BsgI GTGCAG 1 cut(s) 95
Bsh1285I CGRYCG 1 cut(s) 29
BsiEI CGRYCG 1 cut(s) 29
BsiSI CCGG 4 cut(s) 41, 71, 130, 279
BslI CCNNNNNNNGG 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 3 cut(s) 10, 26, 194
BspACI CCGC 1 cut(s) 227
BspCNI CTCAG 1 cut(s) 162
BspPI GGATC 2 cut(s) 18, 202
BspQI GCTCTTC 1 cut(s) 267
BssECI CCNNGG 2 cut(s) 20, 41
BssMI GATC 3 cut(s) 10, 26, 194
BssNI GRCGYC 1 cut(s) 283
Bst2UI CCWGG 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 267
BstACI GRCGYC 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 149
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 3 cut(s) 13, 29, 197
BstMBI GATC 3 cut(s) 10, 26, 194
BstMCI CGRYCG 1 cut(s) 29
BstMWI GCNNNNNNNGC 2 cut(s) 105, 171
BstNI CCWGG 1 cut(s) 22
BstSCI CCNGG 4 cut(s) 20, 40, 69, 277
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BsuI GTATCC 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 316
CaiI CAGNNNCTG 1 cut(s) 315
CfoI GCGC 1 cut(s) 174
CseI GACGC 1 cut(s) 291
Csp6I GTAC 1 cut(s) 268
CviAII CATG 2 cut(s) 49, 100
CviJI RGCY 7 cut(s) 108, 129, 144, 206, 234, 277, 315
CviKI_1 RGCY 7 cut(s) 108, 129, 144, 206, 234, 277, 315
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 1 cut(s) 149
DpnI GATC 3 cut(s) 12, 28, 196
DpnII GATC 3 cut(s) 10, 26, 194
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco24I GRGCYC 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 20
EcoT38I GRGCYC 1 cut(s) 279
FaeI CATG 2 cut(s) 52, 103
FaiI YATR 6 cut(s) 50, 101, 188, 190, 192, 222
FatI CATG 2 cut(s) 48, 99
FriOI GRGCYC 1 cut(s) 279
GlaI GCGC 1 cut(s) 173
HapII CCGG 4 cut(s) 41, 71, 130, 279
HgaI GACGC 1 cut(s) 291
HhaI GCGC 1 cut(s) 174
Hin1I GRCGYC 1 cut(s) 283
Hin1II CATG 2 cut(s) 52, 103
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HindIII AAGCTT 1 cut(s) 142
HpaII CCGG 4 cut(s) 41, 71, 130, 279
HphI GGTGA 2 cut(s) 172, 241
Hpy188III TCNNGA 1 cut(s) 151
Hpy99I CGWCG 2 cut(s) 64, 254
HpyAV CCTTC 2 cut(s) 47, 248
HpyCH4V TGCA 2 cut(s) 48, 76
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 171
HpyF3I CTNAG 1 cut(s) 149
Hsp92I GRCGYC 1 cut(s) 283
Hsp92II CATG 2 cut(s) 52, 103
HspAI GCGC 1 cut(s) 172
Kzo9I GATC 3 cut(s) 10, 26, 194
LguI GCTCTTC 1 cut(s) 267
LpnPI CCDG 8 cut(s) 7, 34, 54, 62, 84, 136, 143, 292
LweI GCATC 1 cut(s) 214
MaeIII GTNAC 1 cut(s) 260
MalI GATC 3 cut(s) 12, 28, 196
MboI GATC 3 cut(s) 10, 26, 194
MboII GAAGA 3 cut(s) 5, 92, 284
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 279
MnlI CCTC 1 cut(s) 27
MseI TTAA 1 cut(s) 300
MslI CAYNNNNRTG 1 cut(s) 98
MspI CCGG 4 cut(s) 41, 71, 130, 279
MspR9I CCNGG 4 cut(s) 22, 42, 71, 279
MvaI CCWGG 1 cut(s) 22
MwoI GCNNNNNNNGC 2 cut(s) 105, 171
NciI CCSGG 3 cut(s) 42, 71, 279
NdeII GATC 3 cut(s) 10, 26, 194
NlaIII CATG 2 cut(s) 52, 103
NmuCI GTSAC 1 cut(s) 260
PciSI GCTCTTC 1 cut(s) 267
Ple19I CGATCG 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 20
PstNI CAGNNNCTG 1 cut(s) 315
PsuI RGATCY 1 cut(s) 10
PvuI CGATCG 1 cut(s) 29
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
RseI CAYNNNNRTG 1 cut(s) 98
SapI GCTCTTC 1 cut(s) 267
SaqAI TTAA 1 cut(s) 300
Sau3AI GATC 3 cut(s) 10, 26, 194
ScrFI CCNGG 4 cut(s) 22, 42, 71, 279
SduI GDGCHC 1 cut(s) 279
SetI ASST 5 cut(s) 39, 110, 146, 208, 236
SfaNI GCATC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 98
SsiI CCGC 1 cut(s) 227
StyD4I CCNGG 4 cut(s) 20, 40, 69, 277
TaqI TCGA 2 cut(s) 29, 249
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 1 cut(s) 316
TseFI GTSAC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 260
TspRI CASTG 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.