Rorug02G0165600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0017549
Physical Location & Seq
Reverse (-)
14761612 .. 14762787
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0165600.1

Sequence Viewer

Length: 519 bp
ATGGTTTTGTTTTGTTATTTGCCTTGCGGTGATGCTGCATCTACTGGAGAAGCGCCGTGCAGCAATGGAGGGTACGTCAAGGGTGGTGTTACATACGTGATTATGGATAACTTGGTAGTGAAGCCTATGTCTACCATATCAATTGTAGATGTGCTTAAAGAGTTGAATGTTATGGAGGTTGGTGCCCTTGAACAGAAGTTGGTTAGTCTTGACACGGAAGAGGGGCTAAAGTTGGTGAAGGCATCTTTGGAGTCAAATACAGTTCTCAGCATGTATTCCTTGGCTTCAGGTTTGCACTACCTCTGTTTCTCATGTGTACTGCAACGGATATGGCAGTACTATGTGGTGATATGGTTCCTATCCATTGAAAGGGAAATATTGCCACAAAATGACTCTGAGGATTCTTCTGAGATATCATTTAATGCAGTGGTTCAGGGAAGGGCACACAAGGAGCGATCTAGGTTTGATTGTCAAGTATGCATGTCTACATATACATTTAGATTCCGGTATGGTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.32

Weight (kDa)

5.03

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 20 - 95 2.5e-10 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65613
fragaria_vesca FvH4_1g19100
prunus_persica Prupe.6G209000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0110091
rosa_laevigata RLG00000017786
rosa_roxburghii Rroxscaffold_2G00133730
rosa_rugosa Rorug02G0165600
rosa_samantha Rh2AG217400 Rh2BG227600 Rh2CG219600 Rh2DG223100
rosa_wichuraiana Rw2G016800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 182
AccI GTMKAC 2 cut(s) 131, 485
AciI CCGC 1 cut(s) 27
AcuI CTGAAG 1 cut(s) 270
AfaI GTAC 3 cut(s) 74, 318, 338
AfiI CCNNNNNNNGG 1 cut(s) 369
AgsI TTSAA 3 cut(s) 166, 191, 368
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
ApeKI GCWGC 2 cut(s) 35, 60
AspLEI GCGC 1 cut(s) 55
AsuHPI GGTGA 3 cut(s) 41, 247, 358
BaeGI GKGCMC 2 cut(s) 187, 445
BanI GGYRCC 1 cut(s) 182
BbvI GCAGC 2 cut(s) 22, 72
BceAI ACGGC 1 cut(s) 40
BfaI CTAG 1 cut(s) 459
BfoI RGCGCY 1 cut(s) 56
BisI GCNGC 2 cut(s) 36, 61
BlsI GCNGC 2 cut(s) 37, 62
BmcAI AGTACT 1 cut(s) 338
BmiI GGNNCC 2 cut(s) 184, 356
BmsI GCATC 3 cut(s) 22, 47, 251
BpmI CTGGAG 1 cut(s) 66
BsaAI YACGTR 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 279
BsaWI WCCGGW 1 cut(s) 504
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bsc4I CCNNNNNNNGG 1 cut(s) 369
Bse1I ACTGG 1 cut(s) 49
Bse3DI GCAATG 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 369
BseMI GCAATG 1 cut(s) 70
BseMII CTCAG 3 cut(s) 280, 387, 399
BseNI ACTGG 1 cut(s) 49
BseSI GKGCMC 2 cut(s) 187, 445
BseXI GCAGC 2 cut(s) 22, 72
BsgI GTGCAG 1 cut(s) 79
BshNI GGYRCC 1 cut(s) 182
BsiSI CCGG 1 cut(s) 505
BslI CCNNNNNNNGG 1 cut(s) 369
Bsp1286I GDGCHC 2 cut(s) 187, 445
Bsp143I GATC 1 cut(s) 455
BspACI CCGC 1 cut(s) 27
BspCNI CTCAG 3 cut(s) 279, 388, 400
BspLI GGNNCC 2 cut(s) 184, 356
BspT107I GGYRCC 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 1 cut(s) 455
BssT1I CCWWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 262
Bst6I CTCTTC 1 cut(s) 213
BstBAI YACGTR 1 cut(s) 97
BstDEI CTNAG 3 cut(s) 266, 396, 408
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 1 cut(s) 458
BstMBI GATC 1 cut(s) 455
BstNSI RCATGY 2 cut(s) 274, 484
BstSLI GKGCMC 2 cut(s) 187, 445
BstV1I GCAGC 2 cut(s) 22, 72
BtsI GCAGTG 1 cut(s) 432
BtsIMutI CAGTG 1 cut(s) 432
CfoI GCGC 1 cut(s) 55
Csp6I GTAC 3 cut(s) 73, 317, 337
CviAII CATG 3 cut(s) 271, 312, 481
CviJI RGCY 3 cut(s) 124, 226, 284
CviKI_1 RGCY 3 cut(s) 124, 226, 284
CviQI GTAC 3 cut(s) 73, 317, 337
DdeI CTNAG 3 cut(s) 266, 396, 408
DpnI GATC 1 cut(s) 457
DpnII GATC 1 cut(s) 455
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 279
Eco32I GATATC 1 cut(s) 414
Eco57I CTGAAG 1 cut(s) 270
EcoRV GATATC 1 cut(s) 414
EcoT14I CCWWGG 1 cut(s) 279
EcoT22I ATGCAT 1 cut(s) 482
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 3 cut(s) 274, 315, 484
FatI CATG 3 cut(s) 270, 311, 480
FblI GTMKAC 2 cut(s) 131, 485
Fnu4HI GCNGC 2 cut(s) 36, 61
Fsp4HI GCNGC 2 cut(s) 36, 61
FspBI CTAG 1 cut(s) 459
GlaI GCGC 1 cut(s) 54
GluI GCNGC 2 cut(s) 36, 61
GsuI CTGGAG 1 cut(s) 66
HaeII RGCGCY 1 cut(s) 56
HapII CCGG 1 cut(s) 505
HhaI GCGC 1 cut(s) 55
Hin1II CATG 3 cut(s) 274, 315, 484
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HinfI GANTC 4 cut(s) 251, 392, 401, 501
HpaII CCGG 1 cut(s) 505
HphI GGTGA 3 cut(s) 41, 247, 358
Hpy166II GTNNAC 3 cut(s) 132, 317, 486
Hpy188I TCNGA 2 cut(s) 397, 409
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 3 cut(s) 132, 317, 486
HpyAV CCTTC 2 cut(s) 232, 432
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4IV ACGT 2 cut(s) 75, 96
HpyCH4V TGCA 6 cut(s) 38, 60, 295, 322, 425, 480
HpyF3I CTNAG 3 cut(s) 266, 396, 408
HpySE526I ACGT 2 cut(s) 75, 96
Hsp92II CATG 3 cut(s) 274, 315, 484
HspAI GCGC 1 cut(s) 53
Kzo9I GATC 1 cut(s) 455
LmnI GCTCC 1 cut(s) 451
LpnPI CCDG 3 cut(s) 30, 273, 419
Lsp1109I GCAGC 2 cut(s) 22, 72
LweI GCATC 3 cut(s) 22, 47, 251
MaeI CTAG 1 cut(s) 459
MaeII ACGT 2 cut(s) 75, 96
MaeIII GTNAC 1 cut(s) 88
MalI GATC 1 cut(s) 457
MboI GATC 1 cut(s) 455
MboII GAAGA 2 cut(s) 230, 396
MfeI CAATTG 1 cut(s) 141
MhlI GDGCHC 2 cut(s) 187, 445
MluCI AATT 1 cut(s) 141
MlyI GAGTC 2 cut(s) 260, 386
MnlI CCTC 5 cut(s) 62, 169, 214, 311, 391
Mph1103I ATGCAT 1 cut(s) 482
MseI TTAA 2 cut(s) 156, 420
MspI CCGG 1 cut(s) 505
MunI CAATTG 1 cut(s) 141
NdeII GATC 1 cut(s) 455
NlaIII CATG 3 cut(s) 274, 315, 484
NlaIV GGNNCC 2 cut(s) 184, 356
NsiI ATGCAT 1 cut(s) 482
NspI RCATGY 2 cut(s) 274, 484
PfeI GAWTC 2 cut(s) 401, 501
PkrI GCNGC 2 cut(s) 37, 62
PleI GAGTC 2 cut(s) 259, 386
PpsI GAGTC 2 cut(s) 259, 386
Ppu21I YACGTR 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 184, 356
RsaI GTAC 3 cut(s) 74, 318, 338
RsaNI GTAC 3 cut(s) 73, 317, 337
SaqAI TTAA 2 cut(s) 156, 420
SatI GCNGC 2 cut(s) 36, 61
Sau3AI GATC 1 cut(s) 455
ScaI AGTACT 1 cut(s) 338
SchI GAGTC 2 cut(s) 260, 386
SduI GDGCHC 2 cut(s) 187, 445
SetI ASST 6 cut(s) 78, 99, 180, 292, 303, 464
SfaNI GCATC 3 cut(s) 22, 47, 251
Sse9I AATT 1 cut(s) 141
SsiI CCGC 1 cut(s) 27
SspI AATATT 1 cut(s) 378
SspMI CTAG 1 cut(s) 459
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 262
TaiI ACGT 2 cut(s) 78, 99
TasI AATT 1 cut(s) 141
TatI WGTACW 2 cut(s) 316, 336
TfiI GAWTC 2 cut(s) 401, 501
Tru1I TTAA 2 cut(s) 156, 420
Tru9I TTAA 2 cut(s) 156, 420
TscAI CASTG 1 cut(s) 432
TseI GCWGC 2 cut(s) 35, 60
TspGWI ACGGA 2 cut(s) 230, 340
TspRI CASTG 1 cut(s) 432
XceI RCATGY 2 cut(s) 274, 484
XmiI GTMKAC 2 cut(s) 131, 485
XspI CTAG 1 cut(s) 459
ZrmI AGTACT 1 cut(s) 338
Zsp2I ATGCAT 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.