Rroxscaffold_2G00133730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017549
Physical Location & Seq
Reverse (-)
71193653 .. 71194481
829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00133730.1

Sequence Viewer

Length: 336 bp
ATGGAGGGGGATCTTGCTCCCAGGCGATCGACTTACCTTCCGGGGTGCATGATGTCGCCGTCGTGCTTCCCGGTGCAGGAAGAAATGGGATACACTCGCATGGAGAGCTGTGGCAAAAACAAGAGAAGTCGGAGATGGCGAAACGTTCTCAGGAGAATGGTGAGCGATAGGCGCAGAAGCAGAAGCATATATGGATCAAGCAAAGCTGTGTCATTTCAGTATGATGCGGTGAGCTATTCGCAGAACTTCGACGAAGGGTGTCACTTGTACGAAGAGCCCGGACGCCGTTCAAAAGTGTTTAACGATGTCAGGTGGGATGGTGATCTAGATCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

13.08

Weight (kDa)

9.42

Isoelectric Point (pI)

119.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65613
fragaria_vesca FvH4_1g19100
prunus_persica Prupe.6G209000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0110091
rosa_laevigata RLG00000017786
rosa_roxburghii Rroxscaffold_2G00133730
rosa_rugosa Rorug02G0165600
rosa_samantha Rh2AG217400 Rh2BG227600 Rh2CG219600 Rh2DG223100
rosa_wichuraiana Rw2G016800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 227
AclI AACGTT 1 cut(s) 144
AclWI GGATC 2 cut(s) 18, 202
AcyI GRCGYC 1 cut(s) 283
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 1 cut(s) 291
AjnI CCWGG 1 cut(s) 20
AluBI AGCT 3 cut(s) 108, 206, 234
AluI AGCT 3 cut(s) 108, 206, 234
AlwI GGATC 2 cut(s) 18, 202
AspLEI GCGC 1 cut(s) 174
AsuC2I CCSGG 3 cut(s) 42, 71, 279
AsuHPI GGTGA 3 cut(s) 172, 241, 332
BanII GRGCYC 1 cut(s) 279
BccI CCATC 2 cut(s) 129, 311
BceAI ACGGC 2 cut(s) 43, 270
BciT130I CCWGG 1 cut(s) 22
BciVI GTATCC 1 cut(s) 83
BcnI CCSGG 3 cut(s) 42, 71, 279
BfaI CTAG 1 cut(s) 326
BfuI GTATCC 1 cut(s) 83
Bme1390I CCNGG 4 cut(s) 22, 42, 71, 279
BmrFI CCNGG 4 cut(s) 22, 42, 71, 279
BmsI GCATC 1 cut(s) 214
BpuMI CCSGG 3 cut(s) 42, 71, 279
BsaBI GATNNNNATC 2 cut(s) 321, 327
BsaHI GRCGYC 1 cut(s) 283
BsaJI CCNNGG 2 cut(s) 20, 41
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse8I GATNNNNATC 2 cut(s) 321, 327
BseBI CCWGG 1 cut(s) 22
BseDI CCNNGG 2 cut(s) 20, 41
BseGI GGATG 1 cut(s) 322
BseJI GATNNNNATC 2 cut(s) 321, 327
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 163
BsgI GTGCAG 1 cut(s) 95
Bsh1285I CGRYCG 1 cut(s) 29
BsiEI CGRYCG 1 cut(s) 29
BsiSI CCGG 3 cut(s) 41, 71, 279
BslI CCNNNNNNNGG 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 5 cut(s) 10, 26, 194, 322, 328
BspACI CCGC 1 cut(s) 227
BspCNI CTCAG 1 cut(s) 162
BspPI GGATC 2 cut(s) 18, 202
BspQI GCTCTTC 1 cut(s) 267
BssECI CCNNGG 2 cut(s) 20, 41
BssMI GATC 5 cut(s) 10, 26, 194, 322, 328
BssNI GRCGYC 1 cut(s) 283
Bst2UI CCWGG 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 267
BstACI GRCGYC 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 149
BstF5I GGATG 1 cut(s) 322
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 5 cut(s) 13, 29, 197, 325, 331
BstMBI GATC 5 cut(s) 10, 26, 194, 322, 328
BstMCI CGRYCG 1 cut(s) 29
BstMWI GCNNNNNNNGC 2 cut(s) 105, 171
BstNI CCWGG 1 cut(s) 22
BstSCI CCNGG 4 cut(s) 20, 40, 69, 277
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BsuI GTATCC 1 cut(s) 83
BtsCI GGATG 1 cut(s) 322
CfoI GCGC 1 cut(s) 174
CseI GACGC 1 cut(s) 291
Csp6I GTAC 1 cut(s) 268
CviAII CATG 2 cut(s) 49, 100
CviJI RGCY 4 cut(s) 108, 206, 234, 277
CviKI_1 RGCY 4 cut(s) 108, 206, 234, 277
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 1 cut(s) 149
DpnI GATC 5 cut(s) 12, 28, 196, 324, 330
DpnII GATC 5 cut(s) 10, 26, 194, 322, 328
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco24I GRGCYC 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 20
EcoT38I GRGCYC 1 cut(s) 279
FaeI CATG 2 cut(s) 52, 103
FaiI YATR 6 cut(s) 50, 101, 188, 190, 192, 222
FatI CATG 2 cut(s) 48, 99
FokI GGATG 1 cut(s) 329
FriOI GRGCYC 1 cut(s) 279
FspBI CTAG 1 cut(s) 326
GlaI GCGC 1 cut(s) 173
HapII CCGG 3 cut(s) 41, 71, 279
HgaI GACGC 1 cut(s) 291
HhaI GCGC 1 cut(s) 174
Hin1I GRCGYC 1 cut(s) 283
Hin1II CATG 2 cut(s) 52, 103
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HpaII CCGG 3 cut(s) 41, 71, 279
HphI GGTGA 3 cut(s) 172, 241, 332
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 2 cut(s) 151, 326
Hpy99I CGWCG 2 cut(s) 64, 254
HpyAV CCTTC 2 cut(s) 47, 248
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 2 cut(s) 48, 76
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 171
HpyF3I CTNAG 1 cut(s) 149
HpySE526I ACGT 1 cut(s) 144
Hsp92I GRCGYC 1 cut(s) 283
Hsp92II CATG 2 cut(s) 52, 103
HspAI GCGC 1 cut(s) 172
Kzo9I GATC 5 cut(s) 10, 26, 194, 322, 328
LguI GCTCTTC 1 cut(s) 267
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 8 cut(s) 7, 34, 54, 62, 84, 136, 292, 295
LweI GCATC 1 cut(s) 214
MaeI CTAG 1 cut(s) 326
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 260
MalI GATC 5 cut(s) 12, 28, 196, 324, 330
MboI GATC 5 cut(s) 10, 26, 194, 322, 328
MboII GAAGA 2 cut(s) 92, 284
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 279
MmeI TCCRAC 1 cut(s) 110
MseI TTAA 1 cut(s) 300
MslI CAYNNNNRTG 1 cut(s) 98
MspI CCGG 3 cut(s) 41, 71, 279
MspR9I CCNGG 4 cut(s) 22, 42, 71, 279
MvaI CCWGG 1 cut(s) 22
MwoI GCNNNNNNNGC 2 cut(s) 105, 171
NciI CCSGG 3 cut(s) 42, 71, 279
NdeII GATC 5 cut(s) 10, 26, 194, 322, 328
NlaIII CATG 2 cut(s) 52, 103
NmuCI GTSAC 1 cut(s) 260
PciSI GCTCTTC 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 136
Ple19I CGATCG 1 cut(s) 29
Psp1406I AACGTT 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 20
PsuI RGATCY 1 cut(s) 10
PvuI CGATCG 1 cut(s) 29
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
RseI CAYNNNNRTG 1 cut(s) 98
SapI GCTCTTC 1 cut(s) 267
SaqAI TTAA 1 cut(s) 300
Sau3AI GATC 5 cut(s) 10, 26, 194, 322, 328
ScrFI CCNGG 4 cut(s) 22, 42, 71, 279
SduI GDGCHC 1 cut(s) 279
SetI ASST 6 cut(s) 39, 110, 147, 208, 236, 314
SfaNI GCATC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 98
SsiI CCGC 1 cut(s) 227
SspMI CTAG 1 cut(s) 326
StyD4I CCNGG 4 cut(s) 20, 40, 69, 277
TaiI ACGT 1 cut(s) 147
TaqI TCGA 2 cut(s) 29, 249
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseFI GTSAC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 260
XbaI TCTAGA 1 cut(s) 325
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.