AT5G66815

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
26677365 .. 26678002
638 bp
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UTR
Exon/CDS
Intron
AT5G66815.1

Sequence Viewer

Length: 318 bp
ATGGAATCGTTTATGGGTCAAAAGAAAACATTGTACGCGTGTTATTTTTTAATGTTGGTGTTTTTTTTAGGGTTCAATTGTGTCCATGGACGAACCCTAAAAGTTGATGATAAGATTAATGGTGGTCATTATGATAGCAAGACGATGATGGCATTGGCAAAGCACAATGATATGATGGTTGATGACAAGGCAATGCAGTTCTCGCCGCCACCACCACCACCACCGCCGTCACAATCGGGAGGTAAAGATGCTGAAGATTTCAGGCCTACAACGCCTGGCCACAGCCCTGGCATTGGCCATAGTTTATCCCATAATTGA

Protein Analysis

105

Amino Acids

11.59

Weight (kDa)

7.0

Isoelectric Point (pI)

52.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015000)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 38
AciI CCGC 2 cut(s) 206, 224
AcoI YGGCCR 2 cut(s) 277, 295
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 293
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 1 cut(s) 76
AjnI CCWGG 2 cut(s) 274, 286
AoxI GGCC 3 cut(s) 263, 277, 295
AseI ATTAAT 1 cut(s) 117
BalI TGGCCA 2 cut(s) 279, 297
BccI CCATC 2 cut(s) 142, 169
BceAI ACGGC 1 cut(s) 211
BciT130I CCWGG 2 cut(s) 276, 288
BisI GCNGC 1 cut(s) 206
BlsI GCNGC 1 cut(s) 207
Bme1390I CCNGG 2 cut(s) 276, 288
BmrFI CCNGG 2 cut(s) 276, 288
BmsI GCATC 1 cut(s) 238
BsaJI CCNNGG 2 cut(s) 85, 286
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 198
BseBI CCWGG 2 cut(s) 276, 288
BseDI CCNNGG 2 cut(s) 85, 286
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMI GCAATG 1 cut(s) 198
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 3 cut(s) 265, 279, 297
BslI CCNNNNNNNGG 1 cut(s) 293
BsnI GGCC 3 cut(s) 265, 279, 297
Bsp19I CCATGG 1 cut(s) 85
BspACI CCGC 2 cut(s) 206, 224
BspANI GGCC 3 cut(s) 265, 279, 297
BspFNI CGCG 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 198
BssECI CCNNGG 2 cut(s) 85, 286
BssT1I CCWWGG 1 cut(s) 85
Bst2UI CCWGG 2 cut(s) 276, 288
BstDSI CCRYGG 1 cut(s) 85
BstFNI CGCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 2 cut(s) 202, 271
BstNI CCWGG 2 cut(s) 276, 288
BstSCI CCNGG 2 cut(s) 274, 286
BstUI CGCG 1 cut(s) 38
BstXI CCANNNNNNTGG 1 cut(s) 287
BsuRI GGCC 3 cut(s) 265, 279, 297
BtgI CCRYGG 1 cut(s) 85
Csp6I GTAC 1 cut(s) 34
CviAII CATG 1 cut(s) 86
CviJI RGCY 4 cut(s) 265, 279, 285, 297
CviKI_1 RGCY 4 cut(s) 265, 279, 285, 297
CviQI GTAC 1 cut(s) 34
EaeI YGGCCR 2 cut(s) 277, 295
Eco130I CCWWGG 1 cut(s) 85
Eco147I AGGCCT 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 273
EcoRII CCWGG 2 cut(s) 274, 286
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 1 cut(s) 89
FaiI YATR 6 cut(s) 14, 87, 132, 173, 300, 312
FatI CATG 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 206
Fsp4HI GCNGC 1 cut(s) 206
GluI GCNGC 1 cut(s) 206
HaeIII GGCC 3 cut(s) 265, 279, 297
Hin1II CATG 1 cut(s) 89
HinfI GANTC 1 cut(s) 5
Hpy188III TCNNGA 1 cut(s) 237
HpyCH4V TGCA 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 271
Hsp92II CATG 1 cut(s) 89
LpnPI CCDG 5 cut(s) 247, 261, 273, 288, 300
LweI GCATC 1 cut(s) 238
MaeIII GTNAC 1 cut(s) 228
MboII GAAGA 1 cut(s) 266
MfeI CAATTG 1 cut(s) 76
MlsI TGGCCA 2 cut(s) 279, 297
MluCI AATT 2 cut(s) 76, 313
MluI ACGCGT 1 cut(s) 36
MluNI TGGCCA 2 cut(s) 279, 297
MnlI CCTC 1 cut(s) 233
Mox20I TGGCCA 2 cut(s) 279, 297
MscI TGGCCA 2 cut(s) 279, 297
MseI TTAA 2 cut(s) 50, 117
Msp20I TGGCCA 2 cut(s) 279, 297
MspR9I CCNGG 2 cut(s) 276, 288
MunI CAATTG 1 cut(s) 76
MvaI CCWGG 2 cut(s) 276, 288
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 2 cut(s) 202, 271
NcoI CCATGG 1 cut(s) 85
NlaIII CATG 1 cut(s) 89
NmuCI GTSAC 1 cut(s) 228
PceI AGGCCT 1 cut(s) 265
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 207
PshBI ATTAAT 1 cut(s) 117
Psp6I CCWGG 2 cut(s) 274, 286
PspGI CCWGG 2 cut(s) 274, 286
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SaqAI TTAA 2 cut(s) 50, 117
SatI GCNGC 1 cut(s) 206
ScrFI CCNGG 2 cut(s) 276, 288
SetI ASST 1 cut(s) 244
SfaNI GCATC 1 cut(s) 238
Sse9I AATT 2 cut(s) 76, 313
SseBI AGGCCT 1 cut(s) 265
SsiI CCGC 2 cut(s) 206, 224
StuI AGGCCT 1 cut(s) 265
StyD4I CCNGG 2 cut(s) 274, 286
StyI CCWWGG 1 cut(s) 85
TasI AATT 2 cut(s) 76, 313
TauI GCSGC 1 cut(s) 208
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 2 cut(s) 50, 117
Tru9I TTAA 2 cut(s) 50, 117
TseFI GTSAC 1 cut(s) 228
Tsp45I GTSAC 1 cut(s) 228
VspI ATTAAT 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.