FvH4_1g15720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015000
Physical Location & Seq
Reverse (-)
8940792 .. 8941389
598 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g15720.t1

Sequence Viewer

Length: 312 bp
ATGGCCAAGCGGCGGCAGACTAGGTTGATCGCCACAACTACTACTTGTACTTTGCTCATCGTTTTGATATGTTGCCACGAAATCACTCTAGTCGATGGAAGGCATTTGAAGCCAGGGGACTGCAAGAAATGTTCGAGGCGGCATCGTGAGCTCAACACTTTGAGTGCAGCAAAGGTTGGTGACCACAATCGTAGTGCTCGTTTGGTTCGAGCAGCTGAAACAAAGACGAGCAAGGCGGAACATGTTACGGATGATTTTCGACCTACTACTCCTGGCCACAGTCCTGGTGTTGGCCACTCCATCAACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.38

Weight (kDa)

9.97

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015000)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66815
fragaria_vesca FvH4_1g15720 FvH4_1g15740
malus_domestica MD15G1281800.v1.1
prunus_persica Prupe.7G136000_v2.0.a1 Prupe.7G136100_v2.0.a1
rosa_laevigata RLG00000017392 RLG00000017393
rosa_roxburghii Rroxscaffold_2G00138550
rosa_rugosa Rorug02G0125300 Rorug02G0125500
rosa_samantha Rh2AG176000 Rh2BG183900 Rh2CG180300 Rh2CG180400 Rh2DG182000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 10, 13, 139, 236
AcoI YGGCCR 3 cut(s) 3, 274, 292
AfaI GTAC 1 cut(s) 49
AfiI CCNNNNNNNGG 2 cut(s) 12, 290
AflIII ACRYGT 1 cut(s) 241
AgsI TTSAA 1 cut(s) 109
AjnI CCWGG 3 cut(s) 112, 271, 283
AluBI AGCT 2 cut(s) 151, 215
AluI AGCT 2 cut(s) 151, 215
Alw21I GWGCWC 2 cut(s) 153, 199
AoxI GGCC 3 cut(s) 3, 274, 292
ApeKI GCWGC 2 cut(s) 167, 212
AsuHPI GGTGA 1 cut(s) 191
BalI TGGCCA 3 cut(s) 5, 276, 294
BanII GRGCYC 1 cut(s) 153
Bbv12I GWGCWC 2 cut(s) 153, 199
BbvI GCAGC 2 cut(s) 179, 224
BccI CCATC 2 cut(s) 89, 308
BciT130I CCWGG 3 cut(s) 114, 273, 285
BfaI CTAG 2 cut(s) 21, 89
BisI GCNGC 5 cut(s) 11, 14, 140, 168, 213
BlsI GCNGC 5 cut(s) 12, 15, 141, 169, 214
Bme1390I CCNGG 3 cut(s) 114, 273, 285
BmrFI CCNGG 3 cut(s) 114, 273, 285
BmsI GCATC 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 113
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 290
BseBI CCWGG 3 cut(s) 114, 273, 285
BseDI CCNNGG 1 cut(s) 113
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 2 cut(s) 12, 290
BseXI GCAGC 2 cut(s) 179, 224
BsgI GTGCAG 1 cut(s) 186
BshFI GGCC 3 cut(s) 5, 276, 294
BsiHKAI GWGCWC 2 cut(s) 153, 199
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 12, 290
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 3 cut(s) 5, 276, 294
Bsp1286I GDGCHC 2 cut(s) 153, 199
Bsp143I GATC 1 cut(s) 27
BspACI CCGC 4 cut(s) 10, 13, 139, 236
BspANI GGCC 3 cut(s) 5, 276, 294
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 1 cut(s) 27
Bst2UI CCWGG 3 cut(s) 114, 273, 285
Bst4CI ACNGT 1 cut(s) 281
BstEII GGTNACC 1 cut(s) 179
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 1 cut(s) 30
BstMBI GATC 1 cut(s) 27
BstMWI GCNNNNNNNGC 2 cut(s) 109, 148
BstNI CCWGG 3 cut(s) 114, 273, 285
BstNSI RCATGY 1 cut(s) 245
BstPI GGTNACC 1 cut(s) 179
BstSCI CCNGG 3 cut(s) 112, 271, 283
BstV1I GCAGC 2 cut(s) 179, 224
BstXI CCANNNNNNTGG 1 cut(s) 284
BsuRI GGCC 3 cut(s) 5, 276, 294
BtsCI GGATG 1 cut(s) 256
Csp6I GTAC 1 cut(s) 48
CviAII CATG 1 cut(s) 242
CviJI RGCY 6 cut(s) 5, 112, 151, 215, 276, 294
CviKI_1 RGCY 6 cut(s) 5, 112, 151, 215, 276, 294
CviQI GTAC 1 cut(s) 48
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
EaeI YGGCCR 3 cut(s) 3, 274, 292
EciI GGCGGA 1 cut(s) 251
Ecl136II GAGCTC 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 151
Eco91I GGTNACC 1 cut(s) 179
EcoICRI GAGCTC 1 cut(s) 151
EcoO65I GGTNACC 1 cut(s) 179
EcoRII CCWGG 3 cut(s) 112, 271, 283
EcoT38I GRGCYC 1 cut(s) 153
FaeI CATG 1 cut(s) 245
FaiI YATR 2 cut(s) 70, 243
FaqI GGGAC 1 cut(s) 131
FatI CATG 1 cut(s) 241
Fnu4HI GCNGC 5 cut(s) 11, 14, 140, 168, 213
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 5 cut(s) 11, 14, 140, 168, 213
FspBI CTAG 2 cut(s) 21, 89
GluI GCNGC 5 cut(s) 11, 14, 140, 168, 213
HaeIII GGCC 3 cut(s) 5, 276, 294
Hin1II CATG 1 cut(s) 245
HphI GGTGA 1 cut(s) 191
Hpy188III TCNNGA 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 93
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4V TGCA 2 cut(s) 123, 167
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 148
Hsp92II CATG 1 cut(s) 245
Kzo9I GATC 1 cut(s) 27
LpnPI CCDG 6 cut(s) 99, 126, 258, 270, 285, 297
Lsp1109I GCAGC 2 cut(s) 179, 224
LweI GCATC 1 cut(s) 151
MaeI CTAG 2 cut(s) 21, 89
MaeIII GTNAC 2 cut(s) 179, 244
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MfeI CAATTG 1 cut(s) 307
MhlI GDGCHC 2 cut(s) 153, 199
MlsI TGGCCA 3 cut(s) 5, 276, 294
MluCI AATT 1 cut(s) 307
MluNI TGGCCA 3 cut(s) 5, 276, 294
MnlI CCTC 1 cut(s) 129
Mox20I TGGCCA 3 cut(s) 5, 276, 294
MscI TGGCCA 3 cut(s) 5, 276, 294
Msp20I TGGCCA 3 cut(s) 5, 276, 294
MspA1I CMGCKG 1 cut(s) 215
MspR9I CCNGG 3 cut(s) 114, 273, 285
MunI CAATTG 1 cut(s) 307
MvaI CCWGG 3 cut(s) 114, 273, 285
MwoI GCNNNNNNNGC 2 cut(s) 109, 148
NdeII GATC 1 cut(s) 27
NlaIII CATG 1 cut(s) 245
NmuCI GTSAC 1 cut(s) 179
NspI RCATGY 1 cut(s) 245
PciI ACATGT 1 cut(s) 241
PcsI WCGNNNNNNNCGW 2 cut(s) 196, 205
PkrI GCNGC 5 cut(s) 12, 15, 141, 169, 214
PscI ACATGT 1 cut(s) 241
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 3 cut(s) 112, 271, 283
PspEI GGTNACC 1 cut(s) 179
PspGI CCWGG 3 cut(s) 112, 271, 283
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
SacI GAGCTC 1 cut(s) 153
SatI GCNGC 5 cut(s) 11, 14, 140, 168, 213
Sau3AI GATC 1 cut(s) 27
ScrFI CCNGG 3 cut(s) 114, 273, 285
SduI GDGCHC 2 cut(s) 153, 199
SetI ASST 5 cut(s) 26, 153, 177, 217, 265
SfaNI GCATC 1 cut(s) 151
Sse9I AATT 1 cut(s) 307
SsiI CCGC 4 cut(s) 10, 13, 139, 236
SspMI CTAG 2 cut(s) 21, 89
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 3 cut(s) 112, 271, 283
TaaI ACNGT 1 cut(s) 281
TaqI TCGA 4 cut(s) 93, 134, 208, 259
TasI AATT 1 cut(s) 307
TatI WGTACW 1 cut(s) 47
TauI GCSGC 3 cut(s) 13, 16, 142
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 2 cut(s) 167, 212
Tsp45I GTSAC 1 cut(s) 179
TspGWI ACGGA 1 cut(s) 263
XceI RCATGY 1 cut(s) 245
XspI CTAG 2 cut(s) 21, 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.