MD15G1281800.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
25239561 .. 25240316
756 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1281800.v1.1.491

Sequence Viewer

Length: 327 bp
ATGGCCAATGCTACTCGTACTTGCTTATTCTTTGTACTAATGCTTTTCTCTCATGAACTGATTTGTATTGATGGAAGGGATTTGAAAGTAAATAACGAGTTGAAGTGTATGAAGTGCTTGAATCTAGATGCAAAAATCATGGCTGGAAAGAGTGCTGGAGATCAAAACACTACTCAGACCCAGAGCCCAACCCCTGGTCATGTAGAAGCTTTCCGACCCACAAACCCTGGTCATAGTCCTGGATTGTCTATTAATTTCAGACTTAGACTTATATCTATATCTCATGAACTCATGATCTTGTCTCGGTTTTCAACTTTGATCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.04

Weight (kDa)

8.86

Isoelectric Point (pI)

28.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015000)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 194
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 19, 36
AfiI CCNNNNNNNGG 1 cut(s) 194
AgsI TTSAA 4 cut(s) 85, 103, 121, 312
AjnI CCWGG 3 cut(s) 193, 226, 238
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 306
AoxI GGCC 1 cut(s) 3
AseI ATTAAT 1 cut(s) 252
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 188
BccI CCATC 1 cut(s) 65
BciT130I CCWGG 3 cut(s) 195, 228, 240
BcoDI GTCTC 1 cut(s) 306
BfaI CTAG 1 cut(s) 125
Bme1390I CCNGG 3 cut(s) 195, 228, 240
BmrFI CCNGG 3 cut(s) 195, 228, 240
BmsI GCATC 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 177
BsaJI CCNNGG 2 cut(s) 193, 226
Bsc4I CCNNNNNNNGG 1 cut(s) 194
BseBI CCWGG 3 cut(s) 195, 228, 240
BseDI CCNNGG 2 cut(s) 193, 226
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 188
BshFI GGCC 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 306
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 3 cut(s) 160, 294, 318
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 187
BspHI TCATGA 3 cut(s) 52, 283, 291
BssECI CCNNGG 2 cut(s) 193, 226
BssMI GATC 3 cut(s) 160, 294, 318
Bst2UI CCWGG 3 cut(s) 195, 228, 240
BstDEI CTNAG 2 cut(s) 174, 263
BstKTI GATC 3 cut(s) 163, 297, 321
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 3 cut(s) 160, 294, 318
BstNI CCWGG 3 cut(s) 195, 228, 240
BstSCI CCNGG 3 cut(s) 193, 226, 238
BsuRI GGCC 1 cut(s) 5
CciI TCATGA 3 cut(s) 52, 283, 291
Csp6I GTAC 2 cut(s) 18, 35
CviAII CATG 5 cut(s) 53, 139, 200, 284, 292
CviJI RGCY 4 cut(s) 5, 143, 186, 209
CviKI_1 RGCY 4 cut(s) 5, 143, 186, 209
CviQI GTAC 2 cut(s) 18, 35
DdeI CTNAG 2 cut(s) 174, 263
DpnI GATC 3 cut(s) 162, 296, 320
DpnII GATC 3 cut(s) 160, 294, 318
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 188
EcoRII CCWGG 3 cut(s) 193, 226, 238
EcoT38I GRGCYC 1 cut(s) 188
FaeI CATG 5 cut(s) 56, 142, 203, 287, 295
FaiI YATR 9 cut(s) 54, 110, 140, 201, 234, 272, 278, 285, 293
FatI CATG 5 cut(s) 52, 138, 199, 283, 291
FriOI GRGCYC 1 cut(s) 188
FspBI CTAG 1 cut(s) 125
GsuI CTGGAG 1 cut(s) 177
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 5 cut(s) 56, 142, 203, 287, 295
HindIII AAGCTT 1 cut(s) 207
HinfI GANTC 1 cut(s) 121
Hpy188I TCNGA 3 cut(s) 177, 215, 260
Hpy188III TCNNGA 4 cut(s) 53, 125, 284, 292
HpyAV CCTTC 1 cut(s) 69
HpyCH4V TGCA 1 cut(s) 131
HpyF3I CTNAG 2 cut(s) 174, 263
Hsp92II CATG 5 cut(s) 56, 142, 203, 287, 295
Kzo9I GATC 3 cut(s) 160, 294, 318
LpnPI CCDG 9 cut(s) 129, 141, 180, 194, 207, 213, 225, 240, 252
LweI GCATC 1 cut(s) 118
MaeI CTAG 1 cut(s) 125
MalI GATC 3 cut(s) 162, 296, 320
MboI GATC 3 cut(s) 160, 294, 318
MhlI GDGCHC 1 cut(s) 188
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 253
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 238
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 252
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 3 cut(s) 195, 228, 240
MvaI CCWGG 3 cut(s) 195, 228, 240
NdeII GATC 3 cut(s) 160, 294, 318
NlaIII CATG 5 cut(s) 56, 142, 203, 287, 295
PagI TCATGA 3 cut(s) 52, 283, 291
PfeI GAWTC 1 cut(s) 121
PflMI CCANNNNNTGG 1 cut(s) 194
PfoI TCCNGGA 1 cut(s) 238
PshBI ATTAAT 1 cut(s) 252
Psp6I CCWGG 3 cut(s) 193, 226, 238
PspGI CCWGG 3 cut(s) 193, 226, 238
RsaI GTAC 2 cut(s) 19, 36
RsaNI GTAC 2 cut(s) 18, 35
SaqAI TTAA 1 cut(s) 252
Sau3AI GATC 3 cut(s) 160, 294, 318
ScrFI CCNGG 3 cut(s) 195, 228, 240
SduI GDGCHC 1 cut(s) 188
SetI ASST 1 cut(s) 211
SfaNI GCATC 1 cut(s) 118
Sse9I AATT 1 cut(s) 253
SspMI CTAG 1 cut(s) 125
StyD4I CCNGG 3 cut(s) 193, 226, 238
TasI AATT 1 cut(s) 253
TatI WGTACW 1 cut(s) 34
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TspDTI ATGAA 3 cut(s) 69, 125, 300
Van91I CCANNNNNTGG 1 cut(s) 194
VspI ATTAAT 1 cut(s) 252
XbaI TCTAGA 1 cut(s) 124
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.