Prupe.7G136100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0015000
Physical Location & Seq
Forward (+)
15326315 .. 15327028
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G136100.1

Sequence Viewer

Length: 312 bp
ATGTCCAAGATTTCTAGGCTGATGATGACCACCACTATCTGTACTTGCCTGCTCTTTTTGATATGTTGCCATGAAGCCTTGCATGTGGAGGGAAGGCATTTGAAGTTCGGGCCGAGCTCAAGGCATAGTGAGAACATGGTGATGAGGACTACCACTCCAAGCACTAATGATGATCACCGTAACGCTAGTGATGGCCATGGTTCGGTGCAAGCTGATCATGATCAGCCAAGAAAGGTTGAACATGTTACTGACGATTTTCGACCCACGACCCCCGGTCACAGTCCCGGCGTTGGTCACTCTATTAAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.44

Weight (kDa)

7.15

Isoelectric Point (pI)

34.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015000)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66815
fragaria_vesca FvH4_1g15720 FvH4_1g15740
malus_domestica MD15G1281800.v1.1
prunus_persica Prupe.7G136000_v2.0.a1 Prupe.7G136100_v2.0.a1
rosa_laevigata RLG00000017392 RLG00000017393
rosa_roxburghii Rroxscaffold_2G00138550
rosa_rugosa Rorug02G0125300 Rorug02G0125500
rosa_samantha Rh2AG176000 Rh2BG183900 Rh2CG180300 Rh2CG180400 Rh2DG182000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 193
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 2 cut(s) 202, 290
AflIII ACRYGT 1 cut(s) 241
AgsI TTSAA 2 cut(s) 103, 239
AhdI GACNNNNNGTC 1 cut(s) 273
AluBI AGCT 2 cut(s) 117, 212
AluI AGCT 2 cut(s) 117, 212
Alw21I GWGCWC 1 cut(s) 119
AoxI GGCC 2 cut(s) 110, 193
AspS9I GGNCC 1 cut(s) 110
AsuC2I CCSGG 2 cut(s) 273, 285
AsuHPI GGTGA 2 cut(s) 151, 167
BalI TGGCCA 1 cut(s) 195
BanII GRGCYC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 119
BccI CCATC 1 cut(s) 185
BclI TGATCA 3 cut(s) 172, 214, 220
BcnI CCSGG 2 cut(s) 273, 285
BfaI CTAG 2 cut(s) 15, 186
Bme1390I CCNGG 2 cut(s) 273, 285
BmeRI GACNNNNNGTC 1 cut(s) 273
BmgT120I GGNCC 1 cut(s) 110
BmrFI CCNGG 2 cut(s) 273, 285
BpuEI CTTGAG 1 cut(s) 103
BpuMI CCSGG 2 cut(s) 273, 285
BsaBI GATNNNNATC 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 196, 271
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 290
Bse8I GATNNNNATC 1 cut(s) 219
BseDI CCNNGG 2 cut(s) 196, 271
BseJI GATNNNNATC 1 cut(s) 219
BseLI CCNNNNNNNGG 2 cut(s) 202, 290
BshFI GGCC 2 cut(s) 112, 195
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 2 cut(s) 273, 285
BslFI GGGAC 1 cut(s) 267
BslI CCNNNNNNNGG 2 cut(s) 202, 290
BsmFI GGGAC 1 cut(s) 267
BsnI GGCC 2 cut(s) 112, 195
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 3 cut(s) 172, 214, 220
Bsp19I CCATGG 1 cut(s) 196
BspANI GGCC 2 cut(s) 112, 195
BspHI TCATGA 1 cut(s) 217
BssECI CCNNGG 2 cut(s) 196, 271
BssMI GATC 3 cut(s) 172, 214, 220
BssT1I CCWWGG 1 cut(s) 196
Bst4CI ACNGT 2 cut(s) 179, 281
BstC8I GCNNGC 2 cut(s) 50, 210
BstDSI CCRYGG 1 cut(s) 196
BstKTI GATC 3 cut(s) 175, 217, 223
BstMBI GATC 3 cut(s) 172, 214, 220
BstNSI RCATGY 2 cut(s) 86, 245
BstSCI CCNGG 2 cut(s) 271, 283
BsuRI GGCC 2 cut(s) 112, 195
BtgI CCRYGG 1 cut(s) 196
Cac8I GCNNGC 2 cut(s) 50, 210
CciI TCATGA 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 110
Csp6I GTAC 1 cut(s) 42
CviAII CATG 6 cut(s) 71, 83, 136, 197, 218, 242
CviJI RGCY 7 cut(s) 19, 77, 112, 117, 195, 212, 226
CviKI_1 RGCY 7 cut(s) 19, 77, 112, 117, 195, 212, 226
CviQI GTAC 1 cut(s) 42
DpnI GATC 3 cut(s) 174, 216, 222
DpnII GATC 3 cut(s) 172, 214, 220
DriI GACNNNNNGTC 1 cut(s) 273
EaeI YGGCCR 1 cut(s) 193
Eam1105I GACNNNNNGTC 1 cut(s) 273
Ecl136II GAGCTC 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 119
Eco53kI GAGCTC 1 cut(s) 117
EcoICRI GAGCTC 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 6 cut(s) 74, 86, 139, 200, 221, 245
FaiI YATR 8 cut(s) 64, 72, 84, 126, 137, 198, 219, 243
FaqI GGGAC 1 cut(s) 267
FatI CATG 6 cut(s) 70, 82, 135, 196, 217, 241
FbaI TGATCA 3 cut(s) 172, 214, 220
FriOI GRGCYC 1 cut(s) 119
FspBI CTAG 2 cut(s) 15, 186
HaeIII GGCC 2 cut(s) 112, 195
HapII CCGG 2 cut(s) 273, 285
Hin1II CATG 6 cut(s) 74, 86, 139, 200, 221, 245
HpaII CCGG 2 cut(s) 273, 285
HphI GGTGA 2 cut(s) 151, 167
Hpy188III TCNNGA 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 87
HpyCH4III ACNGT 2 cut(s) 179, 281
HpyCH4V TGCA 2 cut(s) 82, 208
Hsp92II CATG 6 cut(s) 74, 86, 139, 200, 221, 245
Ksp22I TGATCA 3 cut(s) 172, 214, 220
Kzo9I GATC 3 cut(s) 172, 214, 220
LpnPI CCDG 3 cut(s) 62, 286, 298
MaeI CTAG 2 cut(s) 15, 186
MaeIII GTNAC 4 cut(s) 179, 244, 275, 293
MalI GATC 3 cut(s) 174, 216, 222
MboI GATC 3 cut(s) 172, 214, 220
MhlI GDGCHC 1 cut(s) 119
MlsI TGGCCA 1 cut(s) 195
MluNI TGGCCA 1 cut(s) 195
MnlI CCTC 2 cut(s) 82, 138
Mox20I TGGCCA 1 cut(s) 195
MscI TGGCCA 1 cut(s) 195
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 1 cut(s) 140
Msp20I TGGCCA 1 cut(s) 195
MspI CCGG 2 cut(s) 273, 285
MspR9I CCNGG 2 cut(s) 273, 285
NciI CCSGG 2 cut(s) 273, 285
NcoI CCATGG 1 cut(s) 196
NdeII GATC 3 cut(s) 172, 214, 220
NlaIII CATG 6 cut(s) 74, 86, 139, 200, 221, 245
NmeAIII GCCGAG 1 cut(s) 138
NmuCI GTSAC 2 cut(s) 275, 293
NspI RCATGY 2 cut(s) 86, 245
PagI TCATGA 1 cut(s) 217
PciI ACATGT 1 cut(s) 241
PscI ACATGT 1 cut(s) 241
Psp124BI GAGCTC 1 cut(s) 119
PspPI GGNCC 1 cut(s) 110
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
RseI CAYNNNNRTG 1 cut(s) 140
SacI GAGCTC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 303
Sau3AI GATC 3 cut(s) 172, 214, 220
Sau96I GGNCC 1 cut(s) 110
ScrFI CCNGG 2 cut(s) 273, 285
SduI GDGCHC 1 cut(s) 119
SetI ASST 3 cut(s) 119, 214, 237
SmiMI CAYNNNNRTG 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
SspMI CTAG 2 cut(s) 15, 186
SstI GAGCTC 1 cut(s) 119
StyD4I CCNGG 2 cut(s) 271, 283
StyI CCWWGG 1 cut(s) 196
TaaI ACNGT 2 cut(s) 179, 281
TaqI TCGA 1 cut(s) 259
TatI WGTACW 1 cut(s) 41
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TseFI GTSAC 2 cut(s) 275, 293
Tsp45I GTSAC 2 cut(s) 275, 293
TspDTI ATGAA 1 cut(s) 87
XceI RCATGY 2 cut(s) 86, 245
XspI CTAG 2 cut(s) 15, 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.