Prupe.7G136000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0015000
Physical Location & Seq
Forward (+)
15316945 .. 15317529
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G136000.1

Sequence Viewer

Length: 264 bp
ATGGCCAATGTCAGTTATGCCGCTTGCTTATTTTTTCTTCTAATGATTTTCTCTCATGAACTGATCTGTATTGAAGGAAGGAACTTGAACGTAAGTAAGGACTTGAAGTGTGTGAAATGCTTGAGCCCGGACCCTAAAACCAGTGCAGGAGAGGTTGATGAAGAACACACTCTGGTTGAGAGCCCAAGCCCTGGTCATGTAGAAGCTTTTCGACCCACCACACCAGGTCACAGTCCCGGAGTTGGCCATGCTGTTCACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.39

Weight (kDa)

5.78

Isoelectric Point (pI)

54.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015000)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66815
fragaria_vesca FvH4_1g15720 FvH4_1g15740
malus_domestica MD15G1281800.v1.1
prunus_persica Prupe.7G136000_v2.0.a1 Prupe.7G136100_v2.0.a1
rosa_laevigata RLG00000017392 RLG00000017393
rosa_roxburghii Rroxscaffold_2G00138550
rosa_rugosa Rorug02G0125300 Rorug02G0125500
rosa_samantha Rh2AG176000 Rh2BG183900 Rh2CG180300 Rh2CG180400 Rh2DG182000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 191
AciI CCGC 1 cut(s) 21
AcoI YGGCCR 2 cut(s) 3, 244
AfiI CCNNNNNNNGG 2 cut(s) 191, 242
AgsI TTSAA 3 cut(s) 74, 88, 106
AjnI CCWGG 2 cut(s) 190, 223
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
AoxI GGCC 2 cut(s) 3, 244
Asp700I GAANNNNTTC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 130
AsuC2I CCSGG 2 cut(s) 128, 237
AvaII GGWCC 1 cut(s) 130
BalI TGGCCA 2 cut(s) 5, 246
BanII GRGCYC 2 cut(s) 128, 185
BciT130I CCWGG 2 cut(s) 192, 225
BcnI CCSGG 2 cut(s) 128, 237
BfaI CTAG 1 cut(s) 262
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme1390I CCNGG 4 cut(s) 128, 192, 225, 237
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 4 cut(s) 128, 192, 225, 237
BpuEI CTTGAG 1 cut(s) 142
BpuMI CCSGG 2 cut(s) 128, 237
BsaJI CCNNGG 1 cut(s) 190
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 242
Bse1I ACTGG 1 cut(s) 141
BseBI CCWGG 2 cut(s) 192, 225
BseDI CCNNGG 1 cut(s) 190
BseLI CCNNNNNNNGG 2 cut(s) 191, 242
BseNI ACTGG 1 cut(s) 141
BsgI GTGCAG 1 cut(s) 165
BshFI GGCC 2 cut(s) 5, 246
BsiSI CCGG 2 cut(s) 128, 237
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 2 cut(s) 191, 242
BsmFI GGGAC 1 cut(s) 219
BsnI GGCC 2 cut(s) 5, 246
Bsp1286I GDGCHC 2 cut(s) 128, 185
Bsp143I GATC 1 cut(s) 63
BspACI CCGC 1 cut(s) 21
BspANI GGCC 2 cut(s) 5, 246
BspHI TCATGA 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 132
BsrI ACTGG 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 1 cut(s) 63
Bst2UI CCWGG 2 cut(s) 192, 225
Bst4CI ACNGT 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 25
BstKTI GATC 1 cut(s) 66
BstMBI GATC 1 cut(s) 63
BstNI CCWGG 2 cut(s) 192, 225
BstSCI CCNGG 4 cut(s) 126, 190, 223, 235
BsuRI GGCC 2 cut(s) 5, 246
BtsIMutI CAGTG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 25
CciI TCATGA 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 130
CsiI ACCWGGT 1 cut(s) 223
CviAII CATG 3 cut(s) 56, 197, 248
CviJI RGCY 6 cut(s) 5, 126, 183, 189, 206, 246
CviKI_1 RGCY 6 cut(s) 5, 126, 183, 189, 206, 246
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
EaeI YGGCCR 2 cut(s) 3, 244
Eco24I GRGCYC 2 cut(s) 128, 185
Eco47I GGWCC 1 cut(s) 130
EcoRII CCWGG 2 cut(s) 190, 223
EcoT38I GRGCYC 2 cut(s) 128, 185
FaeI CATG 3 cut(s) 59, 200, 251
FaiI YATR 4 cut(s) 18, 57, 198, 249
FaqI GGGAC 1 cut(s) 219
FatI CATG 3 cut(s) 55, 196, 247
Fnu4HI GCNGC 1 cut(s) 21
FriOI GRGCYC 2 cut(s) 128, 185
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 1 cut(s) 262
GluI GCNGC 1 cut(s) 21
HaeIII GGCC 2 cut(s) 5, 246
HapII CCGG 2 cut(s) 128, 237
Hin1II CATG 3 cut(s) 59, 200, 251
HindIII AAGCTT 1 cut(s) 204
HpaII CCGG 2 cut(s) 128, 237
Hpy166II GTNNAC 1 cut(s) 256
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 2 cut(s) 68, 72
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 1 cut(s) 146
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 3 cut(s) 59, 200, 251
Kzo9I GATC 1 cut(s) 63
LpnPI CCDG 9 cut(s) 132, 141, 154, 158, 177, 204, 210, 237, 250
MabI ACCWGGT 1 cut(s) 223
MaeI CTAG 1 cut(s) 262
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 227
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 2 cut(s) 29, 173
MhlI GDGCHC 2 cut(s) 128, 185
MlsI TGGCCA 2 cut(s) 5, 246
MluNI TGGCCA 2 cut(s) 5, 246
MnlI CCTC 1 cut(s) 145
Mox20I TGGCCA 2 cut(s) 5, 246
MroXI GAANNNNTTC 1 cut(s) 207
MscI TGGCCA 2 cut(s) 5, 246
Msp20I TGGCCA 2 cut(s) 5, 246
MspI CCGG 2 cut(s) 128, 237
MspR9I CCNGG 4 cut(s) 128, 192, 225, 237
MvaI CCWGG 2 cut(s) 192, 225
NciI CCSGG 2 cut(s) 128, 237
NdeII GATC 1 cut(s) 63
NlaIII CATG 3 cut(s) 59, 200, 251
NlaIV GGNNCC 1 cut(s) 132
NmuCI GTSAC 1 cut(s) 227
PagI TCATGA 1 cut(s) 55
PdmI GAANNNNTTC 1 cut(s) 207
PflMI CCANNNNNTGG 1 cut(s) 191
PfoI TCCNGGA 1 cut(s) 235
PkrI GCNGC 1 cut(s) 22
Psp6I CCWGG 2 cut(s) 190, 223
PspGI CCWGG 2 cut(s) 190, 223
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 130
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 1 cut(s) 63
Sau96I GGNCC 1 cut(s) 130
ScrFI CCNGG 4 cut(s) 128, 192, 225, 237
SduI GDGCHC 2 cut(s) 128, 185
SetI ASST 4 cut(s) 93, 156, 208, 229
SexAI ACCWGGT 1 cut(s) 223
SinI GGWCC 1 cut(s) 130
SmlI CTYRAG 1 cut(s) 121
SmoI CTYRAG 1 cut(s) 121
SsiI CCGC 1 cut(s) 21
SspMI CTAG 1 cut(s) 262
StyD4I CCNGG 4 cut(s) 126, 190, 223, 235
TaaI ACNGT 1 cut(s) 233
TaiI ACGT 1 cut(s) 93
TaqI TCGA 1 cut(s) 211
TauI GCSGC 1 cut(s) 23
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 2 cut(s) 72, 174
TspRI CASTG 1 cut(s) 148
Van91I CCANNNNNTGG 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 130
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.