Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATCG00040 |
| malus_domestica | MD15G1438900.v1.1 |
| pyrus_communis | pycom16g22980 |
| rosa_chinensis | RchiOBHm_CPg0502521 |
| rosa_samantha | Rh1AG125300 Rh1CG119200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 450 |
| AciI | CCGC | 5 cut(s) | 218, 748, 935, 1282, 1314 |
| AclWI | GGATC | 6 cut(s) | 408, 421, 869, 882, 1189, 1324 |
| AcuI | CTGAAG | 1 cut(s) | 25 |
| AfaI | GTAC | 5 cut(s) | 156, 525, 1095, 1402, 1407 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 330, 1090, 1459 |
| AjnI | CCWGG | 1 cut(s) | 1238 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 305, 337 |
| AlwI | GGATC | 6 cut(s) | 408, 421, 869, 882, 1189, 1324 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1259 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1297 |
| AspA2I | CCTAGG | 1 cut(s) | 859 |
| AsuC2I | CCSGG | 1 cut(s) | 578 |
| AvrII | CCTAGG | 1 cut(s) | 859 |
| BamHI | GGATCC | 2 cut(s) | 413, 874 |
| BanII | GRGCYC | 2 cut(s) | 106, 1433 |
| BbsI | GAAGAC | 3 cut(s) | 495, 744, 1470 |
| BccI | CCATC | 4 cut(s) | 92, 548, 552, 734 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 590, 624 |
| BciT130I | CCWGG | 1 cut(s) | 1240 |
| BciVI | GTATCC | 1 cut(s) | 922 |
| BclI | TGATCA | 1 cut(s) | 166 |
| BcnI | CCSGG | 1 cut(s) | 578 |
| BfaI | CTAG | 3 cut(s) | 548, 860, 1109 |
| BfuI | GTATCC | 1 cut(s) | 922 |
| BisI | GCNGC | 1 cut(s) | 935 |
| BlnI | CCTAGG | 1 cut(s) | 859 |
| BlsI | GCNGC | 1 cut(s) | 936 |
| BmcAI | AGTACT | 1 cut(s) | 1402 |
| Bme1390I | CCNGG | 2 cut(s) | 578, 1240 |
| BmiI | GGNNCC | 2 cut(s) | 415, 876 |
| BmrFI | CCNGG | 2 cut(s) | 578, 1240 |
| BmsI | GCATC | 3 cut(s) | 577, 899, 1228 |
| BpiI | GAAGAC | 3 cut(s) | 495, 744, 1470 |
| BpuEI | CTTGAG | 1 cut(s) | 854 |
| BpuMI | CCSGG | 1 cut(s) | 578 |
| BsaAI | YACGTR | 1 cut(s) | 1097 |
| BsaBI | GATNNNNATC | 2 cut(s) | 412, 769 |
| BsaJI | CCNNGG | 1 cut(s) | 859 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 330, 1090, 1459 |
| Bse1I | ACTGG | 1 cut(s) | 339 |
| Bse3DI | GCAATG | 1 cut(s) | 986 |
| Bse8I | GATNNNNATC | 2 cut(s) | 412, 769 |
| BseBI | CCWGG | 1 cut(s) | 1240 |
| BseDI | CCNNGG | 1 cut(s) | 859 |
| BseGI | GGATG | 3 cut(s) | 313, 540, 1219 |
| BseJI | GATNNNNATC | 2 cut(s) | 412, 769 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 330, 1090, 1459 |
| BseMI | GCAATG | 1 cut(s) | 986 |
| BseNI | ACTGG | 1 cut(s) | 339 |
| Bsh1285I | CGRYCG | 1 cut(s) | 767 |
| BsiEI | CGRYCG | 1 cut(s) | 767 |
| BsiSI | CCGG | 2 cut(s) | 577, 851 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 330, 1090, 1459 |
| BsmI | GAATGC | 1 cut(s) | 912 |
| Bsp1286I | GDGCHC | 2 cut(s) | 106, 1433 |
| Bsp143I | GATC | 6 cut(s) | 166, 413, 764, 874, 1181, 1316 |
| BspACI | CCGC | 5 cut(s) | 218, 748, 935, 1282, 1314 |
| BspHI | TCATGA | 1 cut(s) | 1573 |
| BspLI | GGNNCC | 2 cut(s) | 415, 876 |
| BspPI | GGATC | 6 cut(s) | 408, 421, 869, 882, 1189, 1324 |
| BsrDI | GCAATG | 1 cut(s) | 986 |
| BsrI | ACTGG | 1 cut(s) | 339 |
| BssECI | CCNNGG | 1 cut(s) | 859 |
| BssMI | GATC | 6 cut(s) | 166, 413, 764, 874, 1181, 1316 |
| BssT1I | CCWWGG | 1 cut(s) | 859 |
| Bst2UI | CCWGG | 1 cut(s) | 1240 |
| Bst4CI | ACNGT | 1 cut(s) | 1405 |
| Bst6I | CTCTTC | 1 cut(s) | 598 |
| BstBAI | YACGTR | 1 cut(s) | 1097 |
| BstC8I | GCNNGC | 1 cut(s) | 746 |
| BstDEI | CTNAG | 2 cut(s) | 303, 404 |
| BstF5I | GGATG | 3 cut(s) | 313, 540, 1219 |
| BstKTI | GATC | 6 cut(s) | 169, 416, 767, 877, 1184, 1319 |
| BstMBI | GATC | 6 cut(s) | 166, 413, 764, 874, 1181, 1316 |
| BstMCI | CGRYCG | 1 cut(s) | 767 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 754 |
| BstNI | CCWGG | 1 cut(s) | 1240 |
| BstSCI | CCNGG | 2 cut(s) | 576, 1238 |
| BstSNI | TACGTA | 1 cut(s) | 1097 |
| BstV2I | GAAGAC | 3 cut(s) | 495, 744, 1470 |
| BstX2I | RGATCY | 3 cut(s) | 413, 874, 1316 |
| BstYI | RGATCY | 3 cut(s) | 413, 874, 1316 |
| BsuI | GTATCC | 1 cut(s) | 922 |
| BtsCI | GGATG | 3 cut(s) | 313, 540, 1219 |
| BtsI | GCAGTG | 1 cut(s) | 384 |
| BtsIMutI | CAGTG | 1 cut(s) | 384 |
| Cac8I | GCNNGC | 1 cut(s) | 746 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1259 |
| CciI | TCATGA | 1 cut(s) | 1573 |
| Csp6I | GTAC | 5 cut(s) | 155, 524, 1094, 1401, 1406 |
| CviAII | CATG | 3 cut(s) | 170, 707, 1574 |
| CviJI | RGCY | 4 cut(s) | 104, 1190, 1385, 1431 |
| CviKI_1 | RGCY | 4 cut(s) | 104, 1190, 1385, 1431 |
| CviQI | GTAC | 5 cut(s) | 155, 524, 1094, 1401, 1406 |
| DdeI | CTNAG | 2 cut(s) | 303, 404 |
| DpnI | GATC | 6 cut(s) | 168, 415, 766, 876, 1183, 1318 |
| DpnII | GATC | 6 cut(s) | 166, 413, 764, 874, 1181, 1316 |
| DraI | TTTAAA | 2 cut(s) | 177, 1419 |
| Eam1104I | CTCTTC | 1 cut(s) | 598 |
| EarI | CTCTTC | 1 cut(s) | 598 |
| Eco105I | TACGTA | 1 cut(s) | 1097 |
| Eco130I | CCWWGG | 1 cut(s) | 859 |
| Eco24I | GRGCYC | 2 cut(s) | 106, 1433 |
| Eco32I | GATATC | 2 cut(s) | 363, 899 |
| Eco57I | CTGAAG | 1 cut(s) | 25 |
| EcoRI | GAATTC | 1 cut(s) | 1448 |
| EcoRII | CCWGG | 1 cut(s) | 1238 |
| EcoRV | GATATC | 2 cut(s) | 363, 899 |
| EcoT14I | CCWWGG | 1 cut(s) | 859 |
| EcoT22I | ATGCAT | 1 cut(s) | 914 |
| EcoT38I | GRGCYC | 2 cut(s) | 106, 1433 |
| ErhI | CCWWGG | 1 cut(s) | 859 |
| FaeI | CATG | 3 cut(s) | 173, 710, 1577 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1437, 1469 |
| FatI | CATG | 3 cut(s) | 169, 706, 1573 |
| FbaI | TGATCA | 1 cut(s) | 166 |
| Fnu4HI | GCNGC | 1 cut(s) | 935 |
| FokI | GGATG | 3 cut(s) | 320, 527, 1206 |
| FriOI | GRGCYC | 2 cut(s) | 106, 1433 |
| Fsp4HI | GCNGC | 1 cut(s) | 935 |
| FspBI | CTAG | 3 cut(s) | 548, 860, 1109 |
| GluI | GCNGC | 1 cut(s) | 935 |
| HapII | CCGG | 2 cut(s) | 577, 851 |
| Hin1II | CATG | 3 cut(s) | 173, 710, 1577 |
| HinfI | GANTC | 6 cut(s) | 283, 673, 722, 1140, 1247, 1256 |
| HpaII | CCGG | 2 cut(s) | 577, 851 |
| Hpy166II | GTNNAC | 3 cut(s) | 242, 313, 1391 |
| Hpy188I | TCNGA | 4 cut(s) | 14, 942, 1255, 1261 |
| Hpy188III | TCNNGA | 4 cut(s) | 20, 140, 548, 1574 |
| Hpy8I | GTNNAC | 3 cut(s) | 242, 313, 1391 |
| HpyAV | CCTTC | 1 cut(s) | 49 |
| HpyCH4III | ACNGT | 1 cut(s) | 1405 |
| HpyCH4IV | ACGT | 2 cut(s) | 571, 1096 |
| HpyCH4V | TGCA | 4 cut(s) | 377, 601, 912, 1290 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 754 |
| HpyF3I | CTNAG | 2 cut(s) | 303, 404 |
| HpySE526I | ACGT | 2 cut(s) | 571, 1096 |
| Hsp92II | CATG | 3 cut(s) | 173, 710, 1577 |
| Ksp22I | TGATCA | 1 cut(s) | 166 |
| Kzo9I | GATC | 6 cut(s) | 166, 413, 764, 874, 1181, 1316 |
| LpnPI | CCDG | 8 cut(s) | 352, 590, 864, 902, 1040, 1225, 1252, 1419 |
| LweI | GCATC | 3 cut(s) | 577, 899, 1228 |
| MaeI | CTAG | 3 cut(s) | 548, 860, 1109 |
| MaeII | ACGT | 2 cut(s) | 571, 1096 |
| MaeIII | GTNAC | 1 cut(s) | 572 |
| MalI | GATC | 6 cut(s) | 168, 415, 766, 876, 1183, 1318 |
| MboI | GATC | 6 cut(s) | 166, 413, 764, 874, 1181, 1316 |
| MflI | RGATCY | 3 cut(s) | 413, 874, 1316 |
| MhlI | GDGCHC | 2 cut(s) | 106, 1433 |
| MnlI | CCTC | 2 cut(s) | 427, 601 |
| Mph1103I | ATGCAT | 1 cut(s) | 914 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1297 |
| MslI | CAYNNNNRTG | 1 cut(s) | 711 |
| MspA1I | CMGCKG | 1 cut(s) | 1314 |
| MspI | CCGG | 2 cut(s) | 577, 851 |
| MspR9I | CCNGG | 2 cut(s) | 578, 1240 |
| Mva1269I | GAATGC | 1 cut(s) | 912 |
| MvaI | CCWGG | 1 cut(s) | 1240 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 754 |
| NciI | CCSGG | 1 cut(s) | 578 |
| NdeII | GATC | 6 cut(s) | 166, 413, 764, 874, 1181, 1316 |
| NlaIII | CATG | 3 cut(s) | 173, 710, 1577 |
| NlaIV | GGNNCC | 2 cut(s) | 415, 876 |
| NmeAIII | GCCGAG | 1 cut(s) | 85 |
| NsiI | ATGCAT | 1 cut(s) | 914 |
| PagI | TCATGA | 1 cut(s) | 1573 |
| PctI | GAATGC | 1 cut(s) | 912 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1297 |
| PfeI | GAWTC | 6 cut(s) | 283, 673, 722, 1140, 1247, 1256 |
| PkrI | GCNGC | 1 cut(s) | 936 |
| Ple19I | CGATCG | 1 cut(s) | 767 |
| Ppu21I | YACGTR | 1 cut(s) | 1097 |
| PsiI | TTATAA | 1 cut(s) | 450 |
| Psp6I | CCWGG | 1 cut(s) | 1238 |
| PspGI | CCWGG | 1 cut(s) | 1238 |
| PspN4I | GGNNCC | 2 cut(s) | 415, 876 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1259 |
| PsuI | RGATCY | 3 cut(s) | 413, 874, 1316 |
| PvuI | CGATCG | 1 cut(s) | 767 |
| RsaI | GTAC | 5 cut(s) | 156, 525, 1095, 1402, 1407 |
| RsaNI | GTAC | 5 cut(s) | 155, 524, 1094, 1401, 1406 |
| RseI | CAYNNNNRTG | 1 cut(s) | 711 |
| SatI | GCNGC | 1 cut(s) | 935 |
| Sau3AI | GATC | 6 cut(s) | 166, 413, 764, 874, 1181, 1316 |
| ScaI | AGTACT | 1 cut(s) | 1402 |
| ScrFI | CCNGG | 2 cut(s) | 578, 1240 |
| SduI | GDGCHC | 2 cut(s) | 106, 1433 |
| SetI | ASST | 7 cut(s) | 41, 535, 574, 1017, 1099, 1241, 1427 |
| SfaNI | GCATC | 3 cut(s) | 577, 899, 1228 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 711 |
| SmlI | CTYRAG | 2 cut(s) | 18, 869 |
| SmoI | CTYRAG | 2 cut(s) | 18, 869 |
| SnaBI | TACGTA | 1 cut(s) | 1097 |
| SsiI | CCGC | 5 cut(s) | 218, 748, 935, 1282, 1314 |
| SspI | AATATT | 3 cut(s) | 474, 959, 1297 |
| SspMI | CTAG | 3 cut(s) | 548, 860, 1109 |
| StyD4I | CCNGG | 2 cut(s) | 576, 1238 |
| StyI | CCWWGG | 1 cut(s) | 859 |
| TaaI | ACNGT | 1 cut(s) | 1405 |
| TaiI | ACGT | 2 cut(s) | 574, 1099 |
| TaqI | TCGA | 6 cut(s) | 52, 96, 387, 767, 1342, 1522 |
| TatI | WGTACW | 3 cut(s) | 154, 523, 1400 |
| TauI | GCSGC | 1 cut(s) | 937 |
| TfiI | GAWTC | 6 cut(s) | 283, 673, 722, 1140, 1247, 1256 |
| TscAI | CASTG | 1 cut(s) | 384 |
| TspDTI | ATGAA | 6 cut(s) | 291, 455, 792, 871, 959, 1239 |
| TspGWI | ACGGA | 2 cut(s) | 918, 1259 |
| TspRI | CASTG | 1 cut(s) | 384 |
| XbaI | TCTAGA | 1 cut(s) | 547 |
| XmaJI | CCTAGG | 1 cut(s) | 859 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1297 |
| XspI | CTAG | 3 cut(s) | 548, 860, 1109 |
| ZrmI | AGTACT | 1 cut(s) | 1402 |
| Zsp2I | ATGCAT | 1 cut(s) | 914 |