Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATCG00040 |
| malus_domestica | MD15G1438900.v1.1 |
| pyrus_communis | pycom16g22980 |
| rosa_chinensis | RchiOBHm_CPg0502521 |
| rosa_samantha | Rh1AG125300 Rh1CG119200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 170, 369, 552 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 792 |
| AciI | CCGC | 4 cut(s) | 1175, 1221, 1245, 1459 |
| AclI | AACGTT | 1 cut(s) | 175 |
| AclWI | GGATC | 6 cut(s) | 111, 500, 800, 813, 1120, 1255 |
| AcoI | YGGCCR | 2 cut(s) | 783, 1007 |
| AcsI | RAATTY | 8 cut(s) | 8, 242, 262, 309, 413, 1045, 1130, 1379 |
| AfaI | GTAC | 5 cut(s) | 254, 444, 1026, 1333, 1338 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 705, 792, 1109 |
| AgsI | TTSAA | 8 cut(s) | 14, 390, 482, 802, 999, 1254, 1351, 1441 |
| AjnI | CCWGG | 1 cut(s) | 937 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1414, 1446 |
| AluBI | AGCT | 2 cut(s) | 1078, 1170 |
| AluI | AGCT | 2 cut(s) | 1078, 1170 |
| Alw26I | GTCTC | 2 cut(s) | 341, 936 |
| AlwI | GGATC | 6 cut(s) | 111, 500, 800, 813, 1120, 1255 |
| AoxI | GGCC | 2 cut(s) | 783, 1007 |
| ApoI | RAATTY | 8 cut(s) | 8, 242, 262, 309, 413, 1045, 1130, 1379 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 9, 1228, 1429 |
| AspS9I | GGNCC | 1 cut(s) | 1361 |
| AsuII | TTCGAA | 1 cut(s) | 230 |
| AvaII | GGWCC | 1 cut(s) | 1361 |
| BamHI | GGATCC | 1 cut(s) | 805 |
| BauI | CACGAG | 1 cut(s) | 542 |
| BceAI | ACGGC | 2 cut(s) | 545, 1022 |
| BciT130I | CCWGG | 1 cut(s) | 939 |
| BcoDI | GTCTC | 2 cut(s) | 341, 936 |
| BfaI | CTAG | 3 cut(s) | 156, 1040, 1496 |
| BglII | AGATCT | 1 cut(s) | 35 |
| BmcAI | AGTACT | 1 cut(s) | 1333 |
| Bme1390I | CCNGG | 1 cut(s) | 939 |
| Bme18I | GGWCC | 1 cut(s) | 1361 |
| BmgT120I | GGNCC | 1 cut(s) | 1361 |
| BmiI | GGNNCC | 1 cut(s) | 807 |
| BmrFI | CCNGG | 1 cut(s) | 939 |
| BmsI | GCATC | 3 cut(s) | 443, 860, 1159 |
| Bpu14I | TTCGAA | 1 cut(s) | 230 |
| Bsa29I | ATCGAT | 1 cut(s) | 842 |
| BsaBI | GATNNNNATC | 2 cut(s) | 231, 331 |
| BsaI | GGTCTC | 1 cut(s) | 936 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 651, 681 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 705, 792, 1109 |
| Bse3DI | GCAATG | 1 cut(s) | 917 |
| Bse8I | GATNNNNATC | 2 cut(s) | 231, 331 |
| BseBI | CCWGG | 1 cut(s) | 939 |
| BseCI | ATCGAT | 1 cut(s) | 842 |
| BseGI | GGATG | 1 cut(s) | 1150 |
| BseJI | GATNNNNATC | 2 cut(s) | 231, 331 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 705, 792, 1109 |
| BseMI | GCAATG | 1 cut(s) | 917 |
| BseMII | CTCAG | 1 cut(s) | 53 |
| BseRI | GAGGAG | 2 cut(s) | 359, 855 |
| BseX3I | CGGCCG | 1 cut(s) | 1007 |
| BseYI | CCCAGC | 1 cut(s) | 1170 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1010, 1204 |
| BshFI | GGCC | 2 cut(s) | 785, 1009 |
| BshVI | ATCGAT | 1 cut(s) | 842 |
| BsiEI | CGRYCG | 2 cut(s) | 1010, 1204 |
| BsiSI | CCGG | 1 cut(s) | 782 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 705, 792, 1109 |
| BsmAI | GTCTC | 2 cut(s) | 341, 936 |
| BsmI | GAATGC | 1 cut(s) | 970 |
| BsnI | GGCC | 2 cut(s) | 785, 1009 |
| Bso31I | GGTCTC | 1 cut(s) | 936 |
| Bsp119I | TTCGAA | 1 cut(s) | 230 |
| Bsp143I | GATC | 9 cut(s) | 35, 100, 116, 377, 505, 805, 1112, 1247, 1492 |
| BspACI | CCGC | 4 cut(s) | 1175, 1221, 1245, 1459 |
| BspANI | GGCC | 2 cut(s) | 785, 1009 |
| BspCNI | CTCAG | 1 cut(s) | 52 |
| BspDI | ATCGAT | 1 cut(s) | 842 |
| BspHI | TCATGA | 2 cut(s) | 97, 1504 |
| BspLI | GGNNCC | 1 cut(s) | 807 |
| BspPI | GGATC | 6 cut(s) | 111, 500, 800, 813, 1120, 1255 |
| BspT104I | TTCGAA | 1 cut(s) | 230 |
| BspTNI | GGTCTC | 1 cut(s) | 936 |
| BsrDI | GCAATG | 1 cut(s) | 917 |
| BssMI | GATC | 9 cut(s) | 35, 100, 116, 377, 505, 805, 1112, 1247, 1492 |
| BssSI | CACGAG | 1 cut(s) | 542 |
| Bst2BI | CACGAG | 1 cut(s) | 542 |
| Bst2UI | CCWGG | 1 cut(s) | 939 |
| Bst4CI | ACNGT | 3 cut(s) | 358, 819, 1336 |
| Bst6I | CTCTTC | 4 cut(s) | 517, 706, 873, 1436 |
| BstBI | TTCGAA | 1 cut(s) | 230 |
| BstDEI | CTNAG | 2 cut(s) | 39, 340 |
| BstF5I | GGATG | 1 cut(s) | 1150 |
| BstKTI | GATC | 9 cut(s) | 38, 103, 119, 380, 508, 808, 1115, 1250, 1495 |
| BstMAI | GTCTC | 2 cut(s) | 341, 936 |
| BstMBI | GATC | 9 cut(s) | 35, 100, 116, 377, 505, 805, 1112, 1247, 1492 |
| BstMCI | CGRYCG | 2 cut(s) | 1010, 1204 |
| BstNI | CCWGG | 1 cut(s) | 939 |
| BstSCI | CCNGG | 1 cut(s) | 937 |
| BstX2I | RGATCY | 5 cut(s) | 35, 116, 505, 805, 1247 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 466 |
| BstYI | RGATCY | 5 cut(s) | 35, 116, 505, 805, 1247 |
| BstZI | CGGCCG | 1 cut(s) | 1007 |
| Bsu15I | ATCGAT | 1 cut(s) | 842 |
| BsuRI | GGCC | 2 cut(s) | 785, 1009 |
| BsuTUI | ATCGAT | 1 cut(s) | 842 |
| BtsCI | GGATG | 1 cut(s) | 1150 |
| BtsIMutI | CAGTG | 1 cut(s) | 1026 |
| CciI | TCATGA | 2 cut(s) | 97, 1504 |
| Cfr13I | GGNCC | 1 cut(s) | 1361 |
| ClaI | ATCGAT | 1 cut(s) | 842 |
| Csp6I | GTAC | 5 cut(s) | 253, 443, 1025, 1332, 1337 |
| CviAII | CATG | 3 cut(s) | 47, 98, 1505 |
| CviJI | RGCY | 7 cut(s) | 532, 785, 1009, 1078, 1121, 1170, 1316 |
| CviKI_1 | RGCY | 7 cut(s) | 532, 785, 1009, 1078, 1121, 1170, 1316 |
| CviQI | GTAC | 5 cut(s) | 253, 443, 1025, 1332, 1337 |
| DdeI | CTNAG | 2 cut(s) | 39, 340 |
| DpnI | GATC | 9 cut(s) | 37, 102, 118, 379, 507, 807, 1114, 1249, 1494 |
| DpnII | GATC | 9 cut(s) | 35, 100, 116, 377, 505, 805, 1112, 1247, 1492 |
| DraI | TTTAAA | 2 cut(s) | 111, 426 |
| EaeI | YGGCCR | 2 cut(s) | 783, 1007 |
| EagI | CGGCCG | 1 cut(s) | 1007 |
| Eam1104I | CTCTTC | 4 cut(s) | 517, 706, 873, 1436 |
| EarI | CTCTTC | 4 cut(s) | 517, 706, 873, 1436 |
| EciI | GGCGGA | 3 cut(s) | 1190, 1236, 1474 |
| EclXI | CGGCCG | 1 cut(s) | 1007 |
| Eco31I | GGTCTC | 1 cut(s) | 936 |
| Eco32I | GATATC | 2 cut(s) | 282, 830 |
| Eco47I | GGWCC | 1 cut(s) | 1361 |
| Eco52I | CGGCCG | 1 cut(s) | 1007 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1361 |
| EcoRI | GAATTC | 1 cut(s) | 1379 |
| EcoRII | CCWGG | 1 cut(s) | 937 |
| EcoRV | GATATC | 2 cut(s) | 282, 830 |
| EcoT22I | ATGCAT | 1 cut(s) | 436 |
| FaeI | CATG | 3 cut(s) | 50, 101, 1508 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1414, 1446 |
| FatI | CATG | 3 cut(s) | 46, 97, 1504 |
| FokI | GGATG | 1 cut(s) | 1137 |
| FspBI | CTAG | 3 cut(s) | 156, 1040, 1496 |
| GsaI | CCCAGC | 1 cut(s) | 1174 |
| HaeIII | GGCC | 2 cut(s) | 785, 1009 |
| HapII | CCGG | 1 cut(s) | 782 |
| Hin1II | CATG | 3 cut(s) | 50, 101, 1508 |
| HindIII | AAGCTT | 1 cut(s) | 1076 |
| HpaII | CCGG | 1 cut(s) | 782 |
| Hpy166II | GTNNAC | 2 cut(s) | 161, 1322 |
| Hpy188I | TCNGA | 5 cut(s) | 286, 439, 873, 1186, 1192 |
| Hpy188III | TCNNGA | 5 cut(s) | 74, 98, 467, 542, 1505 |
| Hpy8I | GTNNAC | 2 cut(s) | 161, 1322 |
| Hpy99I | CGWCG | 1 cut(s) | 1186 |
| HpyAV | CCTTC | 1 cut(s) | 497 |
| HpyCH4III | ACNGT | 3 cut(s) | 358, 819, 1336 |
| HpyCH4IV | ACGT | 2 cut(s) | 175, 727 |
| HpyCH4V | TGCA | 5 cut(s) | 89, 296, 434, 520, 593 |
| HpyF3I | CTNAG | 2 cut(s) | 39, 340 |
| HpySE526I | ACGT | 2 cut(s) | 175, 727 |
| Hsp92II | CATG | 3 cut(s) | 50, 101, 1508 |
| Kzo9I | GATC | 9 cut(s) | 35, 100, 116, 377, 505, 805, 1112, 1247, 1492 |
| LmnI | GCTCC | 1 cut(s) | 624 |
| LweI | GCATC | 3 cut(s) | 443, 860, 1159 |
| MaeI | CTAG | 3 cut(s) | 156, 1040, 1496 |
| MaeII | ACGT | 2 cut(s) | 175, 727 |
| MaeIII | GTNAC | 2 cut(s) | 671, 1136 |
| MalI | GATC | 9 cut(s) | 37, 102, 118, 379, 507, 807, 1114, 1249, 1494 |
| MboI | GATC | 9 cut(s) | 35, 100, 116, 377, 505, 805, 1112, 1247, 1492 |
| MfeI | CAATTG | 1 cut(s) | 1034 |
| MflI | RGATCY | 5 cut(s) | 35, 116, 505, 805, 1247 |
| MlyI | GAGTC | 1 cut(s) | 1039 |
| MmeI | TCCRAC | 2 cut(s) | 108, 1164 |
| MnlI | CCTC | 8 cut(s) | 280, 337, 400, 520, 709, 876, 1437, 1448 |
| Mph1103I | ATGCAT | 1 cut(s) | 436 |
| MroXI | GAANNNNTTC | 3 cut(s) | 9, 1228, 1429 |
| MseI | TTAA | 8 cut(s) | 110, 179, 222, 425, 695, 1055, 1305, 1500 |
| MslI | CAYNNNNRTG | 2 cut(s) | 102, 921 |
| MspA1I | CMGCKG | 1 cut(s) | 1170 |
| MspI | CCGG | 1 cut(s) | 782 |
| MspR9I | CCNGG | 1 cut(s) | 939 |
| MunI | CAATTG | 1 cut(s) | 1034 |
| Mva1269I | GAATGC | 1 cut(s) | 970 |
| MvaI | CCWGG | 1 cut(s) | 939 |
| NdeII | GATC | 9 cut(s) | 35, 100, 116, 377, 505, 805, 1112, 1247, 1492 |
| NlaIII | CATG | 3 cut(s) | 50, 101, 1508 |
| NlaIV | GGNNCC | 1 cut(s) | 807 |
| NsiI | ATGCAT | 1 cut(s) | 436 |
| NspV | TTCGAA | 1 cut(s) | 230 |
| PagI | TCATGA | 2 cut(s) | 97, 1504 |
| PctI | GAATGC | 1 cut(s) | 970 |
| PdmI | GAANNNNTTC | 3 cut(s) | 9, 1228, 1429 |
| PfeI | GAWTC | 9 cut(s) | 202, 227, 232, 650, 709, 844, 945, 1178, 1187 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 792 |
| PleI | GAGTC | 1 cut(s) | 1038 |
| PpsI | GAGTC | 1 cut(s) | 1038 |
| PpuMI | RGGWCCY | 1 cut(s) | 1361 |
| PsiI | TTATAA | 3 cut(s) | 170, 369, 552 |
| Psp1406I | AACGTT | 1 cut(s) | 175 |
| Psp5II | RGGWCCY | 1 cut(s) | 1361 |
| Psp6I | CCWGG | 1 cut(s) | 937 |
| PspFI | CCCAGC | 1 cut(s) | 1170 |
| PspGI | CCWGG | 1 cut(s) | 937 |
| PspN4I | GGNNCC | 1 cut(s) | 807 |
| PspPI | GGNCC | 1 cut(s) | 1361 |
| PspPPI | RGGWCCY | 1 cut(s) | 1361 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1417, 1449 |
| PsuI | RGATCY | 5 cut(s) | 35, 116, 505, 805, 1247 |
| PvuII | CAGCTG | 1 cut(s) | 1170 |
| RsaI | GTAC | 5 cut(s) | 254, 444, 1026, 1333, 1338 |
| RsaNI | GTAC | 5 cut(s) | 253, 443, 1025, 1332, 1337 |
| RseI | CAYNNNNRTG | 2 cut(s) | 102, 921 |
| SaqAI | TTAA | 8 cut(s) | 110, 179, 222, 425, 695, 1055, 1305, 1500 |
| Sau3AI | GATC | 9 cut(s) | 35, 100, 116, 377, 505, 805, 1112, 1247, 1492 |
| Sau96I | GGNCC | 1 cut(s) | 1361 |
| ScaI | AGTACT | 1 cut(s) | 1333 |
| SchI | GAGTC | 1 cut(s) | 1039 |
| ScrFI | CCNGG | 1 cut(s) | 939 |
| SfaNI | GCATC | 3 cut(s) | 443, 860, 1159 |
| SfuI | TTCGAA | 1 cut(s) | 230 |
| SinI | GGWCC | 1 cut(s) | 1361 |
| SmiI | ATTTAAAT | 1 cut(s) | 426 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 102, 921 |
| SsiI | CCGC | 4 cut(s) | 1175, 1221, 1245, 1459 |
| SspI | AATATT | 3 cut(s) | 393, 890, 1015 |
| SspMI | CTAG | 3 cut(s) | 156, 1040, 1496 |
| StyD4I | CCNGG | 1 cut(s) | 937 |
| SwaI | ATTTAAAT | 1 cut(s) | 426 |
| TaaI | ACNGT | 3 cut(s) | 358, 819, 1336 |
| TaiI | ACGT | 2 cut(s) | 178, 730 |
| TaqI | TCGA | 8 cut(s) | 187, 230, 405, 756, 842, 1200, 1273, 1291 |
| TaqII | GACCGA | 1 cut(s) | 1218 |
| TatI | WGTACW | 2 cut(s) | 442, 1331 |
| TfiI | GAWTC | 9 cut(s) | 202, 227, 232, 650, 709, 844, 945, 1178, 1187 |
| Tru1I | TTAA | 8 cut(s) | 110, 179, 222, 425, 695, 1055, 1305, 1500 |
| Tru9I | TTAA | 8 cut(s) | 110, 179, 222, 425, 695, 1055, 1305, 1500 |
| TscAI | CASTG | 1 cut(s) | 1026 |
| TspDTI | ATGAA | 5 cut(s) | 374, 452, 750, 890, 1085 |
| TspGWI | ACGGA | 6 cut(s) | 109, 208, 303, 659, 1042, 1403 |
| TspRI | CASTG | 1 cut(s) | 1026 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 792 |
| VpaK11BI | GGWCC | 1 cut(s) | 1361 |
| XapI | RAATTY | 8 cut(s) | 8, 242, 262, 309, 413, 1045, 1130, 1379 |
| XmnI | GAANNNNTTC | 3 cut(s) | 9, 1228, 1429 |
| XspI | CTAG | 3 cut(s) | 156, 1040, 1496 |
| ZrmI | AGTACT | 1 cut(s) | 1333 |
| Zsp2I | ATGCAT | 1 cut(s) | 436 |