Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATCG00040 |
| malus_domestica | MD15G1438900.v1.1 |
| pyrus_communis | pycom16g22980 |
| rosa_chinensis | RchiOBHm_CPg0502521 |
| rosa_samantha | Rh1AG125300 Rh1CG119200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 5 cut(s) | 170, 369, 552, 968, 1278 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 705 |
| AciI | CCGC | 2 cut(s) | 219, 696 |
| AclWI | GGATC | 5 cut(s) | 500, 713, 726, 1155, 1168 |
| AcoI | YGGCCR | 1 cut(s) | 693 |
| AcsI | RAATTY | 8 cut(s) | 8, 239, 309, 413, 958, 1043, 1292, 1374 |
| AfaI | GTAC | 5 cut(s) | 254, 444, 939, 1246, 1251 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 705, 934, 1022 |
| AgsI | TTSAA | 9 cut(s) | 14, 390, 482, 594, 671, 715, 912, 1264, 1354 |
| AjnI | CCWGG | 2 cut(s) | 850, 1082 |
| AluBI | AGCT | 2 cut(s) | 991, 1340 |
| AluI | AGCT | 2 cut(s) | 991, 1340 |
| Alw26I | GTCTC | 1 cut(s) | 849 |
| AlwI | GGATC | 5 cut(s) | 500, 713, 726, 1155, 1168 |
| AoxI | GGCC | 1 cut(s) | 693 |
| ApoI | RAATTY | 8 cut(s) | 8, 239, 309, 413, 958, 1043, 1292, 1374 |
| AseI | ATTAAT | 1 cut(s) | 681 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 9, 1141, 1314 |
| AsuC2I | CCSGG | 1 cut(s) | 74 |
| AsuHPI | GGTGA | 1 cut(s) | 511 |
| AsuII | TTCGAA | 1 cut(s) | 767 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 987, 1020 |
| BamHI | GGATCC | 2 cut(s) | 718, 1160 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 642, 674 |
| BauI | CACGAG | 1 cut(s) | 542 |
| BbsI | GAAGAC | 2 cut(s) | 667, 756 |
| BccI | CCATC | 1 cut(s) | 707 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1077, 1111 |
| BciT130I | CCWGG | 2 cut(s) | 852, 1084 |
| BciVI | GTATCC | 1 cut(s) | 766 |
| BclI | TGATCA | 1 cut(s) | 100 |
| BcnI | CCSGG | 1 cut(s) | 74 |
| BcoDI | GTCTC | 1 cut(s) | 849 |
| BfaI | CTAG | 2 cut(s) | 29, 1409 |
| BfuI | GTATCC | 1 cut(s) | 766 |
| BisI | GCNGC | 1 cut(s) | 696 |
| BlsI | GCNGC | 1 cut(s) | 697 |
| BmcAI | AGTACT | 1 cut(s) | 1246 |
| Bme1390I | CCNGG | 3 cut(s) | 74, 852, 1084 |
| BmiI | GGNNCC | 2 cut(s) | 720, 1162 |
| BmrFI | CCNGG | 3 cut(s) | 74, 852, 1084 |
| BmsI | GCATC | 2 cut(s) | 1072, 1407 |
| BpiI | GAAGAC | 2 cut(s) | 667, 756 |
| Bpu14I | TTCGAA | 1 cut(s) | 767 |
| BpuEI | CTTGAG | 1 cut(s) | 1150 |
| BpuMI | CCSGG | 1 cut(s) | 74 |
| Bsa29I | ATCGAT | 1 cut(s) | 119 |
| BsaBI | GATNNNNATC | 2 cut(s) | 36, 331 |
| BsaI | GGTCTC | 1 cut(s) | 849 |
| BsaJI | CCNNGG | 1 cut(s) | 1083 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 705, 934, 1022 |
| Bse3DI | GCAATG | 1 cut(s) | 830 |
| Bse8I | GATNNNNATC | 2 cut(s) | 36, 331 |
| BseBI | CCWGG | 2 cut(s) | 852, 1084 |
| BseCI | ATCGAT | 1 cut(s) | 119 |
| BseDI | CCNNGG | 1 cut(s) | 1083 |
| BseGI | GGATG | 1 cut(s) | 1063 |
| BseJI | GATNNNNATC | 2 cut(s) | 36, 331 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 705, 934, 1022 |
| BseMI | GCAATG | 1 cut(s) | 830 |
| BseX3I | CGGCCG | 1 cut(s) | 693 |
| Bsh1285I | CGRYCG | 2 cut(s) | 696, 1117 |
| BshFI | GGCC | 1 cut(s) | 695 |
| BshVI | ATCGAT | 1 cut(s) | 119 |
| BsiEI | CGRYCG | 2 cut(s) | 696, 1117 |
| BsiSI | CCGG | 2 cut(s) | 73, 692 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 705, 934, 1022 |
| BsmAI | GTCTC | 1 cut(s) | 849 |
| BsmI | GAATGC | 1 cut(s) | 883 |
| BsnI | GGCC | 1 cut(s) | 695 |
| Bso31I | GGTCTC | 1 cut(s) | 849 |
| Bsp119I | TTCGAA | 1 cut(s) | 767 |
| Bsp143I | GATC | 7 cut(s) | 100, 116, 377, 505, 718, 1160, 1405 |
| BspACI | CCGC | 2 cut(s) | 219, 696 |
| BspANI | GGCC | 1 cut(s) | 695 |
| BspDI | ATCGAT | 1 cut(s) | 119 |
| BspHI | TCATGA | 2 cut(s) | 97, 1417 |
| BspLI | GGNNCC | 2 cut(s) | 720, 1162 |
| BspPI | GGATC | 5 cut(s) | 500, 713, 726, 1155, 1168 |
| BspT104I | TTCGAA | 1 cut(s) | 767 |
| BspTNI | GGTCTC | 1 cut(s) | 849 |
| BsrDI | GCAATG | 1 cut(s) | 830 |
| BssECI | CCNNGG | 1 cut(s) | 1083 |
| BssMI | GATC | 7 cut(s) | 100, 116, 377, 505, 718, 1160, 1405 |
| BssSI | CACGAG | 1 cut(s) | 542 |
| Bst2BI | CACGAG | 1 cut(s) | 542 |
| Bst2UI | CCWGG | 2 cut(s) | 852, 1084 |
| Bst4CI | ACNGT | 2 cut(s) | 1157, 1249 |
| Bst6I | CTCTTC | 2 cut(s) | 517, 786 |
| BstBI | TTCGAA | 1 cut(s) | 767 |
| BstDEI | CTNAG | 1 cut(s) | 340 |
| BstF5I | GGATG | 1 cut(s) | 1063 |
| BstKTI | GATC | 7 cut(s) | 103, 119, 380, 508, 721, 1163, 1408 |
| BstMAI | GTCTC | 1 cut(s) | 849 |
| BstMBI | GATC | 7 cut(s) | 100, 116, 377, 505, 718, 1160, 1405 |
| BstMCI | CGRYCG | 2 cut(s) | 696, 1117 |
| BstNI | CCWGG | 2 cut(s) | 852, 1084 |
| BstSCI | CCNGG | 3 cut(s) | 72, 850, 1082 |
| BstV2I | GAAGAC | 2 cut(s) | 667, 756 |
| BstX2I | RGATCY | 3 cut(s) | 505, 718, 1160 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 466 |
| BstYI | RGATCY | 3 cut(s) | 505, 718, 1160 |
| BstZI | CGGCCG | 1 cut(s) | 693 |
| Bsu15I | ATCGAT | 1 cut(s) | 119 |
| BsuI | GTATCC | 1 cut(s) | 766 |
| BsuRI | GGCC | 1 cut(s) | 695 |
| BsuTUI | ATCGAT | 1 cut(s) | 119 |
| BtsCI | GGATG | 1 cut(s) | 1063 |
| BtsIMutI | CAGTG | 1 cut(s) | 1162 |
| CciI | TCATGA | 2 cut(s) | 97, 1417 |
| ClaI | ATCGAT | 1 cut(s) | 119 |
| Csp6I | GTAC | 5 cut(s) | 253, 443, 938, 1245, 1250 |
| CviAII | CATG | 5 cut(s) | 47, 98, 104, 635, 1418 |
| CviJI | RGCY | 6 cut(s) | 653, 695, 991, 1034, 1229, 1340 |
| CviKI_1 | RGCY | 6 cut(s) | 653, 695, 991, 1034, 1229, 1340 |
| CviQI | GTAC | 5 cut(s) | 253, 443, 938, 1245, 1250 |
| DdeI | CTNAG | 1 cut(s) | 340 |
| DpnI | GATC | 7 cut(s) | 102, 118, 379, 507, 720, 1162, 1407 |
| DpnII | GATC | 7 cut(s) | 100, 116, 377, 505, 718, 1160, 1405 |
| DraI | TTTAAA | 2 cut(s) | 111, 426 |
| EaeI | YGGCCR | 1 cut(s) | 693 |
| EagI | CGGCCG | 1 cut(s) | 693 |
| Eam1104I | CTCTTC | 2 cut(s) | 517, 786 |
| EarI | CTCTTC | 2 cut(s) | 517, 786 |
| EclXI | CGGCCG | 1 cut(s) | 693 |
| Eco31I | GGTCTC | 1 cut(s) | 849 |
| Eco32I | GATATC | 2 cut(s) | 38, 743 |
| Eco52I | CGGCCG | 1 cut(s) | 693 |
| EcoRI | GAATTC | 1 cut(s) | 1292 |
| EcoRII | CCWGG | 2 cut(s) | 850, 1082 |
| EcoRV | GATATC | 2 cut(s) | 38, 743 |
| EcoT22I | ATGCAT | 1 cut(s) | 732 |
| FaeI | CATG | 5 cut(s) | 50, 101, 107, 638, 1421 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1327, 1359 |
| FatI | CATG | 5 cut(s) | 46, 97, 103, 634, 1417 |
| FbaI | TGATCA | 1 cut(s) | 100 |
| Fnu4HI | GCNGC | 1 cut(s) | 696 |
| FokI | GGATG | 1 cut(s) | 1050 |
| Fsp4HI | GCNGC | 1 cut(s) | 696 |
| FspBI | CTAG | 2 cut(s) | 29, 1409 |
| GluI | GCNGC | 1 cut(s) | 696 |
| HaeIII | GGCC | 1 cut(s) | 695 |
| HapII | CCGG | 2 cut(s) | 73, 692 |
| Hin1II | CATG | 5 cut(s) | 50, 101, 107, 638, 1421 |
| HindIII | AAGCTT | 1 cut(s) | 989 |
| HinfI | GANTC | 5 cut(s) | 202, 227, 531, 1091, 1315 |
| HpaII | CCGG | 2 cut(s) | 73, 692 |
| HphI | GGTGA | 1 cut(s) | 511 |
| Hpy166II | GTNNAC | 3 cut(s) | 161, 1080, 1235 |
| Hpy188I | TCNGA | 3 cut(s) | 286, 439, 1099 |
| Hpy188III | TCNNGA | 5 cut(s) | 98, 467, 542, 1167, 1418 |
| Hpy8I | GTNNAC | 3 cut(s) | 161, 1080, 1235 |
| Hpy99I | CGWCG | 1 cut(s) | 1099 |
| HpyAV | CCTTC | 3 cut(s) | 497, 763, 849 |
| HpyCH4III | ACNGT | 2 cut(s) | 1157, 1249 |
| HpyCH4IV | ACGT | 1 cut(s) | 598 |
| HpyCH4V | TGCA | 6 cut(s) | 89, 296, 730, 1126, 1134, 1398 |
| HpyF3I | CTNAG | 1 cut(s) | 340 |
| HpySE526I | ACGT | 1 cut(s) | 598 |
| Hsp92II | CATG | 5 cut(s) | 50, 101, 107, 638, 1421 |
| Ksp22I | TGATCA | 1 cut(s) | 100 |
| Kzo9I | GATC | 7 cut(s) | 100, 116, 377, 505, 718, 1160, 1405 |
| LmnI | GCTCC | 1 cut(s) | 624 |
| LpnPI | CCDG | 7 cut(s) | 86, 452, 705, 837, 864, 1069, 1096 |
| LweI | GCATC | 2 cut(s) | 1072, 1407 |
| MaeI | CTAG | 2 cut(s) | 29, 1409 |
| MaeII | ACGT | 1 cut(s) | 598 |
| MaeIII | GTNAC | 1 cut(s) | 1049 |
| MalI | GATC | 7 cut(s) | 102, 118, 379, 507, 720, 1162, 1407 |
| MboI | GATC | 7 cut(s) | 100, 116, 377, 505, 718, 1160, 1405 |
| MflI | RGATCY | 3 cut(s) | 505, 718, 1160 |
| MlyI | GAGTC | 1 cut(s) | 525 |
| MmeI | TCCRAC | 3 cut(s) | 108, 264, 1077 |
| MnlI | CCTC | 7 cut(s) | 280, 337, 400, 520, 789, 1174, 1361 |
| Mph1103I | ATGCAT | 1 cut(s) | 732 |
| MroXI | GAANNNNTTC | 3 cut(s) | 9, 1141, 1314 |
| MseI | TTAA | 6 cut(s) | 110, 179, 425, 681, 1218, 1325 |
| MslI | CAYNNNNRTG | 3 cut(s) | 102, 639, 834 |
| MspI | CCGG | 2 cut(s) | 73, 692 |
| MspR9I | CCNGG | 3 cut(s) | 74, 852, 1084 |
| Mva1269I | GAATGC | 1 cut(s) | 883 |
| MvaI | CCWGG | 2 cut(s) | 852, 1084 |
| NciI | CCSGG | 1 cut(s) | 74 |
| NdeII | GATC | 7 cut(s) | 100, 116, 377, 505, 718, 1160, 1405 |
| NlaIII | CATG | 5 cut(s) | 50, 101, 107, 638, 1421 |
| NlaIV | GGNNCC | 2 cut(s) | 720, 1162 |
| NsiI | ATGCAT | 1 cut(s) | 732 |
| NspV | TTCGAA | 1 cut(s) | 767 |
| PagI | TCATGA | 2 cut(s) | 97, 1417 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 604 |
| PctI | GAATGC | 1 cut(s) | 883 |
| PdmI | GAANNNNTTC | 3 cut(s) | 9, 1141, 1314 |
| PfeI | GAWTC | 4 cut(s) | 202, 227, 1091, 1315 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 705 |
| PfoI | TCCNGGA | 1 cut(s) | 72 |
| PkrI | GCNGC | 1 cut(s) | 697 |
| PleI | GAGTC | 1 cut(s) | 525 |
| PpsI | GAGTC | 1 cut(s) | 525 |
| PshBI | ATTAAT | 1 cut(s) | 681 |
| PsiI | TTATAA | 5 cut(s) | 170, 369, 552, 968, 1278 |
| Psp6I | CCWGG | 2 cut(s) | 850, 1082 |
| PspGI | CCWGG | 2 cut(s) | 850, 1082 |
| PspN4I | GGNNCC | 2 cut(s) | 720, 1162 |
| PsuI | RGATCY | 3 cut(s) | 505, 718, 1160 |
| RsaI | GTAC | 5 cut(s) | 254, 444, 939, 1246, 1251 |
| RsaNI | GTAC | 5 cut(s) | 253, 443, 938, 1245, 1250 |
| RseI | CAYNNNNRTG | 3 cut(s) | 102, 639, 834 |
| SaqAI | TTAA | 6 cut(s) | 110, 179, 425, 681, 1218, 1325 |
| SatI | GCNGC | 1 cut(s) | 696 |
| Sau3AI | GATC | 7 cut(s) | 100, 116, 377, 505, 718, 1160, 1405 |
| ScaI | AGTACT | 1 cut(s) | 1246 |
| SchI | GAGTC | 1 cut(s) | 525 |
| ScrFI | CCNGG | 3 cut(s) | 74, 852, 1084 |
| SetI | ASST | 8 cut(s) | 142, 601, 930, 993, 1085, 1276, 1342, 1372 |
| SfaNI | GCATC | 2 cut(s) | 1072, 1407 |
| SfuI | TTCGAA | 1 cut(s) | 767 |
| SmiI | ATTTAAAT | 1 cut(s) | 426 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 102, 639, 834 |
| SmlI | CTYRAG | 1 cut(s) | 1165 |
| SmoI | CTYRAG | 1 cut(s) | 1165 |
| SsiI | CCGC | 2 cut(s) | 219, 696 |
| SspI | AATATT | 2 cut(s) | 393, 803 |
| SspMI | CTAG | 2 cut(s) | 29, 1409 |
| StyD4I | CCNGG | 3 cut(s) | 72, 850, 1082 |
| SwaI | ATTTAAAT | 1 cut(s) | 426 |
| TaaI | ACNGT | 2 cut(s) | 1157, 1249 |
| TaiI | ACGT | 1 cut(s) | 601 |
| TaqI | TCGA | 7 cut(s) | 119, 187, 767, 1113, 1186, 1204, 1372 |
| TaqII | GACCGA | 1 cut(s) | 1131 |
| TatI | WGTACW | 2 cut(s) | 442, 1244 |
| TauI | GCSGC | 1 cut(s) | 698 |
| TfiI | GAWTC | 4 cut(s) | 202, 227, 1091, 1315 |
| Tru1I | TTAA | 6 cut(s) | 110, 179, 425, 681, 1218, 1325 |
| Tru9I | TTAA | 6 cut(s) | 110, 179, 425, 681, 1218, 1325 |
| TscAI | CASTG | 1 cut(s) | 1162 |
| TspDTI | ATGAA | 6 cut(s) | 374, 452, 667, 803, 951, 998 |
| TspGWI | ACGGA | 3 cut(s) | 303, 1316, 1327 |
| TspRI | CASTG | 1 cut(s) | 1162 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 705 |
| VspI | ATTAAT | 1 cut(s) | 681 |
| XapI | RAATTY | 8 cut(s) | 8, 239, 309, 413, 958, 1043, 1292, 1374 |
| XmnI | GAANNNNTTC | 3 cut(s) | 9, 1141, 1314 |
| XspI | CTAG | 2 cut(s) | 29, 1409 |
| ZrmI | AGTACT | 1 cut(s) | 1246 |
| Zsp2I | ATGCAT | 1 cut(s) | 732 |