ATCG00430

NDH shuttles electrons from NAD(P)H plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Pt
OG0013283
Physical Location & Seq
Reverse (-)
49257 .. 49934
678 bp
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UTR
Exon/CDS
Intron
ATCG00430.1

Sequence Viewer

Length: 678 bp
ATGAATTCCATTAAGTTTCCCATACTTGATCGAACAACAAAAAATTCCGTTATTTCAACTACGTTAAATGATCTTTCAAATTGGTCAAGACTTTCCAGCCTATGGCCGCTTCTTTATGGTACCAGTTGTTGTTTCATTGAATTTGCCTCATTAATAGGCTCCCGATTTGACTTTGATCGTTATGGGTTAGTACCAAGATCGAGTCCTAGACAGGCGGACCTTATTTTAACAGCAGGTACAGTAACAATGAAAATGGCTCCTTCTTTAGTGCGATTATATGAACAAATGCCTGAACCGAAGTATGTTATTGCTATGGGAGCCTGTACAATTACAGGGGGGATGTTCAGTACCGATTCTTATAGTACTGTTCGAGGAGTTGATAAGCTAATTCCTGTAGATGTCTATTTGCCGGGTTGTCCACCTAAACCAGAGGCTGTTATAGACGCTATAACAAAGCTTCGTAAGAAAATAGCTAGAGAAATCTATAAGGATCGAATTAGACCTCAACAGGGTAATCGGTGTTTTACTACCAATCACAAGTTTTTTGTTGTACGCAGTCCGCATATTGGAAATTATGATCAAGAACTACTCTATCCACCATCATCTACTTCAGAGATCTCTACTGAAACATTTTTTAAATACAAAAGTCCAGTATCGTCCCACGAATTAGTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 map00190 map01100
Pfam Domains
Protein Families
Oxidored_q6

Protein Analysis

225

Amino Acids

25.37

Weight (kDa)

9.17

Isoelectric Point (pI)

54.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_q6 PF01058 43 - 153 6.6e-29 NADH ubiquinone oxidoreductase, 20 Kd subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 224
Acc65I GGTACC 1 cut(s) 119
AccB1I GGYRCC 1 cut(s) 119
AccB7I CCANNNNNTGG 1 cut(s) 102
AciI CCGC 3 cut(s) 107, 215, 560
AclWI GGATC 1 cut(s) 498
AcoI YGGCCR 1 cut(s) 104
AcsI RAATTY 3 cut(s) 4, 43, 140
AcuI CTGAAG 1 cut(s) 594
AfaI GTAC 7 cut(s) 121, 192, 238, 325, 349, 364, 552
AfiI CCNNNNNNNGG 3 cut(s) 102, 509, 566
AgsI TTSAA 3 cut(s) 57, 78, 140
AluBI AGCT 3 cut(s) 385, 457, 473
AluI AGCT 3 cut(s) 385, 457, 473
AlwI GGATC 1 cut(s) 498
AlwNI CAGNNNCTG 1 cut(s) 434
AoxI GGCC 1 cut(s) 104
ApoI RAATTY 3 cut(s) 4, 43, 140
AseI ATTAAT 1 cut(s) 152
Asp718I GGTACC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 217
AsuC2I CCSGG 1 cut(s) 411
AvaII GGWCC 1 cut(s) 217
BanI GGYRCC 1 cut(s) 119
BccI CCATC 1 cut(s) 607
BclI TGATCA 1 cut(s) 577
BcnI CCSGG 1 cut(s) 411
BfaI CTAG 2 cut(s) 207, 474
BfmI CTRYAG 1 cut(s) 393
BfuAI ACCTGC 1 cut(s) 224
BglII AGATCT 1 cut(s) 615
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
BmcAI AGTACT 1 cut(s) 364
Bme1390I CCNGG 1 cut(s) 411
Bme18I GGWCC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 4 cut(s) 121, 160, 258, 319
BmrFI CCNGG 1 cut(s) 411
BpuMI CCSGG 1 cut(s) 411
Bsc4I CCNNNNNNNGG 3 cut(s) 102, 509, 566
Bse1I ACTGG 2 cut(s) 123, 650
BseGI GGATG 1 cut(s) 345
BseLI CCNNNNNNNGG 3 cut(s) 102, 509, 566
BseNI ACTGG 2 cut(s) 123, 650
BseRI GAGGAG 1 cut(s) 387
BshFI GGCC 1 cut(s) 106
BshNI GGYRCC 1 cut(s) 119
BsiSI CCGG 1 cut(s) 410
BslFI GGGAC 1 cut(s) 643
BslI CCNNNNNNNGG 3 cut(s) 102, 509, 566
BsmFI GGGAC 1 cut(s) 643
BsnI GGCC 1 cut(s) 106
Bsp1407I TGTACA 1 cut(s) 323
Bsp143I GATC 7 cut(s) 28, 70, 175, 197, 490, 577, 615
BspACI CCGC 3 cut(s) 107, 215, 560
BspANI GGCC 1 cut(s) 106
BspLI GGNNCC 4 cut(s) 121, 160, 258, 319
BspMI ACCTGC 1 cut(s) 224
BspPI GGATC 1 cut(s) 498
BspT107I GGYRCC 1 cut(s) 119
BsrGI TGTACA 1 cut(s) 323
BsrI ACTGG 2 cut(s) 123, 650
BssMI GATC 7 cut(s) 28, 70, 175, 197, 490, 577, 615
Bst4CI ACNGT 2 cut(s) 241, 367
BstAUI TGTACA 1 cut(s) 323
BstF5I GGATG 1 cut(s) 345
BstKTI GATC 7 cut(s) 31, 73, 178, 200, 493, 580, 618
BstMBI GATC 7 cut(s) 28, 70, 175, 197, 490, 577, 615
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 409
BstSFI CTRYAG 1 cut(s) 393
BstX2I RGATCY 1 cut(s) 615
BstYI RGATCY 1 cut(s) 615
BsuRI GGCC 1 cut(s) 106
BtsCI GGATG 1 cut(s) 345
BveI ACCTGC 1 cut(s) 224
CaiI CAGNNNCTG 1 cut(s) 434
Cfr13I GGNCC 1 cut(s) 217
CseI GACGC 1 cut(s) 452
Csp6I GTAC 7 cut(s) 120, 191, 237, 324, 348, 363, 551
CviJI RGCY 9 cut(s) 99, 106, 159, 257, 320, 385, 434, 457, 473
CviKI_1 RGCY 9 cut(s) 99, 106, 159, 257, 320, 385, 434, 457, 473
CviQI GTAC 7 cut(s) 120, 191, 237, 324, 348, 363, 551
DpnI GATC 7 cut(s) 30, 72, 177, 199, 492, 579, 617
DpnII GATC 7 cut(s) 28, 70, 175, 197, 490, 577, 615
DraI TTTAAA 1 cut(s) 637
EaeI YGGCCR 1 cut(s) 104
EciI GGCGGA 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 594
EcoRI GAATTC 1 cut(s) 4
FaqI GGGAC 1 cut(s) 643
FbaI TGATCA 1 cut(s) 577
Fnu4HI GCNGC 1 cut(s) 107
FokI GGATG 1 cut(s) 352
Fsp4HI GCNGC 1 cut(s) 107
FspBI CTAG 2 cut(s) 207, 474
GluI GCNGC 1 cut(s) 107
HaeIII GGCC 1 cut(s) 106
HapII CCGG 1 cut(s) 410
HgaI GACGC 1 cut(s) 452
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 2 cut(s) 202, 353
HpaII CCGG 1 cut(s) 410
Hpy166II GTNNAC 1 cut(s) 419
Hpy188I TCNGA 1 cut(s) 613
Hpy188III TCNNGA 3 cut(s) 87, 162, 581
Hpy8I GTNNAC 1 cut(s) 419
HpyAV CCTTC 1 cut(s) 270
HpyCH4III ACNGT 2 cut(s) 241, 367
HpyCH4IV ACGT 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpySE526I ACGT 1 cut(s) 62
KpnI GGTACC 1 cut(s) 123
Ksp22I TGATCA 1 cut(s) 577
Kzo9I GATC 7 cut(s) 28, 70, 175, 197, 490, 577, 615
LmnI GCTCC 3 cut(s) 164, 262, 317
MaeI CTAG 2 cut(s) 207, 474
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 1 cut(s) 241
MalI GATC 7 cut(s) 30, 72, 177, 199, 492, 579, 617
MboI GATC 7 cut(s) 28, 70, 175, 197, 490, 577, 615
MflI RGATCY 1 cut(s) 615
MlyI GAGTC 1 cut(s) 211
MnlI CCTC 4 cut(s) 157, 365, 424, 513
MseI TTAA 5 cut(s) 12, 65, 152, 227, 636
MspI CCGG 1 cut(s) 410
MspR9I CCNGG 1 cut(s) 411
MwoI GCNNNNNNNGC 1 cut(s) 317
NciI CCSGG 1 cut(s) 411
NdeII GATC 7 cut(s) 28, 70, 175, 197, 490, 577, 615
NlaIV GGNNCC 4 cut(s) 121, 160, 258, 319
PfeI GAWTC 1 cut(s) 353
PflMI CCANNNNNTGG 1 cut(s) 102
PkrI GCNGC 1 cut(s) 108
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
PshBI ATTAAT 1 cut(s) 152
PspN4I GGNNCC 4 cut(s) 121, 160, 258, 319
PspPI GGNCC 1 cut(s) 217
PstNI CAGNNNCTG 1 cut(s) 434
PsuI RGATCY 1 cut(s) 615
RsaI GTAC 7 cut(s) 121, 192, 238, 325, 349, 364, 552
RsaNI GTAC 7 cut(s) 120, 191, 237, 324, 348, 363, 551
SaqAI TTAA 5 cut(s) 12, 65, 152, 227, 636
SatI GCNGC 1 cut(s) 107
Sau3AI GATC 7 cut(s) 28, 70, 175, 197, 490, 577, 615
Sau96I GGNCC 1 cut(s) 217
ScaI AGTACT 1 cut(s) 364
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 411
SetI ASST 8 cut(s) 65, 222, 238, 387, 424, 459, 475, 505
SfcI CTRYAG 1 cut(s) 393
SinI GGWCC 1 cut(s) 217
SsiI CCGC 3 cut(s) 107, 215, 560
SspMI CTAG 2 cut(s) 207, 474
StyD4I CCNGG 1 cut(s) 409
TaaI ACNGT 2 cut(s) 241, 367
TaiI ACGT 1 cut(s) 65
TaqI TCGA 4 cut(s) 31, 200, 370, 493
TatI WGTACW 2 cut(s) 323, 362
TauI GCSGC 1 cut(s) 109
TfiI GAWTC 1 cut(s) 353
Tru1I TTAA 5 cut(s) 12, 65, 152, 227, 636
Tru9I TTAA 5 cut(s) 12, 65, 152, 227, 636
TspDTI ATGAA 4 cut(s) 17, 124, 263, 294
TspGWI ACGGA 1 cut(s) 37
Van91I CCANNNNNTGG 1 cut(s) 102
VpaK11BI GGWCC 1 cut(s) 217
VspI ATTAAT 1 cut(s) 152
XapI RAATTY 3 cut(s) 4, 43, 140
XspI CTAG 2 cut(s) 207, 474
ZrmI AGTACT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.