Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020180

Physical Location & Seq

Genomic Coordinates Reverse (-)

68512 .. 68865

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATCG00660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGACTAGAATTAAACGCGGATATATAGCTCGGAGGCGTAGAACAAAACTTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCACGGCTTACACGAACTATGACTCAACAGAGAATAAGAGCTTTAGTTTCGGCTCATCGGGATAGGGGTAAAAGAAAAAGAGATTTTCGCCGTTTATGGATCACTCGAATAAATGCCGTAATTCACGAAATGGGGGTATTCTATAGTTATAATGAATTCATACACAATCTATACAAGAAGCAATTACTTCTTAATCGGAAAATACTTGCACAAATAGCTCTATTAAATAGGAGTTGTCTTTATACAATTTCGAATGACATAAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0031967 GO:0031975 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071826 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L20

Protein Analysis

117

Amino Acids

14.16

Weight (kDa)

11.89

Isoelectric Point (pI)

53.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L20	PF00453	3 - 107	6.1e-31	Ribosomal protein L20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0020180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00660
malus_domestica	MD11G1294300.v1.1
pyrus_communis	pycom12397g00190
rosa_chinensis	RchiOBHm_CPg0502001
rosa_roxburghii	Rroxscaffold_2G00119030
rosa_wichuraiana	Rw5G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	234
AccII	CGCG	1 cut(s)	18
AciI	CCGC	1 cut(s)	18
AclWI	GGATC	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	239
AluBI	AGCT	4 cut(s)	29, 69, 125, 302
AluI	AGCT	4 cut(s)	29, 69, 125, 302
AlwI	GGATC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	239
AsuII	TTCGAA	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	82
BceAI	ACGGC	3 cut(s)	104, 159, 185
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	226
BmsI	GCATC	1 cut(s)	71
Bpu14I	TTCGAA	1 cut(s)	335
Bsh1236I	CGCG	1 cut(s)	18
Bsp119I	TTCGAA	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	1 cut(s)	183
BspACI	CCGC	1 cut(s)	18
BspFNI	CGCG	1 cut(s)	18
BspPI	GGATC	1 cut(s)	191
BspT104I	TTCGAA	1 cut(s)	335
BssMI	GATC	1 cut(s)	183
BstBI	TTCGAA	1 cut(s)	335
BstFNI	CGCG	1 cut(s)	18
BstKTI	GATC	1 cut(s)	186
BstMBI	GATC	1 cut(s)	183
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstSFI	CTRYAG	1 cut(s)	226
BstUI	CGCG	1 cut(s)	18
CviJI	RGCY	7 cut(s)	29, 69, 80, 91, 125, 137, 302
CviKI_1	RGCY	7 cut(s)	29, 69, 80, 91, 125, 137, 302
DpnI	GATC	1 cut(s)	185
DpnII	GATC	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	239
EcoT38I	GRGCYC	1 cut(s)	82
FriOI	GRGCYC	1 cut(s)	82
FspBI	CTAG	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	67
HinfI	GANTC	1 cut(s)	106
Hpy188I	TCNGA	2 cut(s)	33, 282
Hpy188III	TCNNGA	2 cut(s)	143, 209
HpyCH4V	TGCA	2 cut(s)	62, 293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
Kzo9I	GATC	1 cut(s)	183
LweI	GCATC	1 cut(s)	71
MaeI	CTAG	1 cut(s)	6
MalI	GATC	1 cut(s)	185
MboI	GATC	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	5 cut(s)	9, 204, 239, 266, 330
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	2 cut(s)	27, 68
MseI	TTAA	3 cut(s)	12, 276, 308
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeII	GATC	1 cut(s)	183
NspV	TTCGAA	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	94
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PsiI	TTATAA	1 cut(s)	234
SaqAI	TTAA	3 cut(s)	12, 276, 308
Sau3AI	GATC	1 cut(s)	183
SchI	GAGTC	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	4 cut(s)	31, 71, 127, 304
SfaNI	GCATC	1 cut(s)	71
SfcI	CTRYAG	1 cut(s)	226
SfuI	TTCGAA	1 cut(s)	335
Sse9I	AATT	5 cut(s)	9, 204, 239, 266, 330
SsiI	CCGC	1 cut(s)	18
SspMI	CTAG	1 cut(s)	6
TaqI	TCGA	3 cut(s)	73, 190, 335
TasI	AATT	5 cut(s)	9, 204, 239, 266, 330
Tru1I	TTAA	3 cut(s)	12, 276, 308
Tru9I	TTAA	3 cut(s)	12, 276, 308
TspDTI	ATGAA	2 cut(s)	232, 252
XapI	RAATTY	1 cut(s)	239
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.