Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0020180

Physical Location & Seq

Genomic Coordinates Reverse (-)

41326105 .. 41326254

Gene Structure 150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1294300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

ATGACCAGAATTAAACGAGGGTATATAGCTCGAAGACGTAGAACAAAAATTCGTTTATTTGCATCAACCTTTCGAGGGGCTCATTCAAGACTTACTCGTACTATTACTCAACAGAAAATAAGAGCTTTTAGTTTCGGCTCATCGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0031967 GO:0031975 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071826 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L20

Protein Analysis

50

Amino Acids

5.74

Weight (kDa)

12.0

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L20	PF00453	3 - 45	5.4e-07	Ribosomal protein L20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0020180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00660
malus_domestica	MD11G1294300.v1.1
pyrus_communis	pycom12397g00190
rosa_chinensis	RchiOBHm_CPg0502001
rosa_roxburghii	Rroxscaffold_2G00119030
rosa_wichuraiana	Rw5G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	48
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	1 cut(s)	87
AluBI	AGCT	2 cut(s)	29, 125
AluI	AGCT	2 cut(s)	29, 125
ApoI	RAATTY	1 cut(s)	48
BanII	GRGCYC	1 cut(s)	82
BbsI	GAAGAC	1 cut(s)	40
BmsI	GCATC	1 cut(s)	71
BpiI	GAAGAC	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	82
BstV2I	GAAGAC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	99
CviJI	RGCY	4 cut(s)	29, 80, 125, 138
CviKI_1	RGCY	4 cut(s)	29, 80, 125, 138
CviQI	GTAC	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	82
FaiI	YATR	2 cut(s)	24, 26
FriOI	GRGCYC	1 cut(s)	82
Hpy188III	TCNNGA	2 cut(s)	87, 144
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	1 cut(s)	62
HpySE526I	ACGT	1 cut(s)	37
LpnPI	CCDG	1 cut(s)	19
LweI	GCATC	1 cut(s)	71
MaeII	ACGT	1 cut(s)	37
MboII	GAAGA	1 cut(s)	45
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	2 cut(s)	9, 48
MnlI	CCTC	2 cut(s)	11, 68
MseI	TTAA	1 cut(s)	12
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	12
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	4 cut(s)	31, 40, 71, 127
SfaNI	GCATC	1 cut(s)	71
SgeI	CNNG	6 cut(s)	18, 29, 42, 86, 99, 108
Sse9I	AATT	2 cut(s)	9, 48
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	2 cut(s)	31, 73
TasI	AATT	2 cut(s)	9, 48
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
XapI	RAATTY	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.