Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0020180

Physical Location & Seq

Genomic Coordinates Forward (+)

50830928 .. 50831281

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00119030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGACCAGAATTAAACGAGGGTATATAGCTCGAAGACGTAGAACAAAAATCCGTTTATTTGCATCAACTTTTCGAGGGGCTCATTCAAGACTTACTCGGACTATTACTCAACAGAAAATAAGAGCTTTGGTTTCGGCTCATCGGGATAGGGGTAGACAAAAGAGAGATTTTCGTCGTTTGTGGATTACTCGTATAAATGCAGTAATTCGAGACAAGAAAGTATACTTTAGTTATAGTAAGTTAATACACAATCTGTACAAGAAACAATTGCTTCTTAATCGTAAAATACTTGCACAAATAGCTATATTAAATAAGAGTTGTCTTTATATGATTTCCAATGAGATCATAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0031967 GO:0031975 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071826 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L20

Protein Analysis

117

Amino Acids

14.14

Weight (kDa)

11.93

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L20	PF00453	3 - 107	6.8e-31	Ribosomal protein L20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0020180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00660
malus_domestica	MD11G1294300.v1.1
pyrus_communis	pycom12397g00190
rosa_chinensis	RchiOBHm_CPg0502001
rosa_roxburghii	Rroxscaffold_2G00119030
rosa_wichuraiana	Rw5G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	154, 222
AfaI	GTAC	1 cut(s)	257
AgsI	TTSAA	1 cut(s)	87
AluBI	AGCT	3 cut(s)	29, 125, 302
AluI	AGCT	3 cut(s)	29, 125, 302
Alw26I	GTCTC	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	82
BbsI	GAAGAC	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	204
BmsI	GCATC	1 cut(s)	71
BpiI	GAAGAC	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp1407I	TGTACA	1 cut(s)	255
Bsp143I	GATC	1 cut(s)	342
BsrGI	TGTACA	1 cut(s)	255
BssMI	GATC	1 cut(s)	342
BssNAI	GTATAC	1 cut(s)	223
Bst1107I	GTATAC	1 cut(s)	223
BstAUI	TGTACA	1 cut(s)	255
BstKTI	GATC	1 cut(s)	345
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	1 cut(s)	342
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstV2I	GAAGAC	1 cut(s)	40
BstZ17I	GTATAC	1 cut(s)	223
Csp6I	GTAC	1 cut(s)	256
CviJI	RGCY	5 cut(s)	29, 80, 125, 137, 302
CviKI_1	RGCY	5 cut(s)	29, 80, 125, 137, 302
CviQI	GTAC	1 cut(s)	256
DpnI	GATC	1 cut(s)	344
DpnII	GATC	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	82
FaiI	YATR	9 cut(s)	24, 26, 194, 223, 234, 305, 327, 329, 347
FblI	GTMKAC	2 cut(s)	154, 222
FriOI	GRGCYC	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	155, 223
Hpy188I	TCNGA	1 cut(s)	99
Hpy188III	TCNNGA	3 cut(s)	87, 143, 209
Hpy8I	GTNNAC	2 cut(s)	155, 223
Hpy99I	CGWCG	1 cut(s)	177
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	3 cut(s)	62, 200, 293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpySE526I	ACGT	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	342
LpnPI	CCDG	1 cut(s)	19
LweI	GCATC	1 cut(s)	71
MaeII	ACGT	1 cut(s)	37
MalI	GATC	1 cut(s)	344
MboI	GATC	1 cut(s)	342
MboII	GAAGA	1 cut(s)	45
MfeI	CAATTG	1 cut(s)	266
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	3 cut(s)	9, 204, 266
MnlI	CCTC	2 cut(s)	11, 68
MseI	TTAA	4 cut(s)	12, 242, 276, 308
MunI	CAATTG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeII	GATC	1 cut(s)	342
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	4 cut(s)	12, 242, 276, 308
Sau3AI	GATC	1 cut(s)	342
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	4 cut(s)	31, 40, 127, 304
SfaNI	GCATC	1 cut(s)	71
Sse9I	AATT	3 cut(s)	9, 204, 266
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	3 cut(s)	31, 73, 208
TasI	AATT	3 cut(s)	9, 204, 266
TatI	WGTACW	1 cut(s)	255
Tru1I	TTAA	4 cut(s)	12, 242, 276, 308
Tru9I	TTAA	4 cut(s)	12, 242, 276, 308
TspGWI	ACGGA	1 cut(s)	41
XmiI	GTMKAC	2 cut(s)	154, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.