Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0020180

Physical Location & Seq

Genomic Coordinates Forward (+)

71257107 .. 71257460

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G040380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGACCAGAATTAAACGAGGGTATATAGCTCGAAGACGTAGAACAAAAATCCGTTTATTTGCATCAACTTTTCGAGGGGCTCATTCAAGACTTACTCGGACTATTACTCAACAGAAAATAAGAGCTTTGGTTTCGGCTCATCGGGATAGGGGTAGACAAAAGAGAGATTTTCGTCGTTTGTGGATTACTCGTATAAATGCAGTAATTCGAGACAAGAAAGTATACTTTAGTTATAGTAAGTTAATACACAATCTGTACAAGAAACAATTGCTTCTTAATCGTAAAATACTTGCACAAATAGCTATATTAAATAAGAGTTGTCTTTATATGATTTCCAATGAGATCATAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0031967 GO:0031975 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071826 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L20

Protein Analysis

117

Amino Acids

14.14

Weight (kDa)

11.93

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L20	PF00453	3 - 107	6.8e-31	Ribosomal protein L20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00660
malus_domestica	MD11G1294300.v1.1
pyrus_communis	pycom12397g00190
rosa_chinensis	RchiOBHm_CPg0502001
rosa_roxburghii	Rroxscaffold_2G00119030
rosa_wichuraiana	Rw5G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	154, 222
AfaI	GTAC	1 cut(s)	257
AgsI	TTSAA	1 cut(s)	87
AluBI	AGCT	3 cut(s)	29, 125, 302
AluI	AGCT	3 cut(s)	29, 125, 302
Alw26I	GTCTC	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	82
BbsI	GAAGAC	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	204
BmsI	GCATC	1 cut(s)	71
BpiI	GAAGAC	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp1407I	TGTACA	1 cut(s)	255
Bsp143I	GATC	1 cut(s)	342
BsrGI	TGTACA	1 cut(s)	255
BssMI	GATC	1 cut(s)	342
BssNAI	GTATAC	1 cut(s)	223
Bst1107I	GTATAC	1 cut(s)	223
BstAUI	TGTACA	1 cut(s)	255
BstKTI	GATC	1 cut(s)	345
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	1 cut(s)	342
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstV2I	GAAGAC	1 cut(s)	40
BstZ17I	GTATAC	1 cut(s)	223
Csp6I	GTAC	1 cut(s)	256
CviJI	RGCY	5 cut(s)	29, 80, 125, 137, 302
CviKI_1	RGCY	5 cut(s)	29, 80, 125, 137, 302
CviQI	GTAC	1 cut(s)	256
DpnI	GATC	1 cut(s)	344
DpnII	GATC	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	82
FaiI	YATR	9 cut(s)	24, 26, 194, 223, 234, 305, 327, 329, 347
FblI	GTMKAC	2 cut(s)	154, 222
FriOI	GRGCYC	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	155, 223
Hpy188I	TCNGA	1 cut(s)	99
Hpy188III	TCNNGA	3 cut(s)	87, 143, 209
Hpy8I	GTNNAC	2 cut(s)	155, 223
Hpy99I	CGWCG	1 cut(s)	177
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	3 cut(s)	62, 200, 293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpySE526I	ACGT	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	342
LpnPI	CCDG	1 cut(s)	19
LweI	GCATC	1 cut(s)	71
MaeII	ACGT	1 cut(s)	37
MalI	GATC	1 cut(s)	344
MboI	GATC	1 cut(s)	342
MboII	GAAGA	1 cut(s)	45
MfeI	CAATTG	1 cut(s)	266
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	3 cut(s)	9, 204, 266
MnlI	CCTC	2 cut(s)	11, 68
MseI	TTAA	4 cut(s)	12, 242, 276, 308
MunI	CAATTG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeII	GATC	1 cut(s)	342
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	4 cut(s)	12, 242, 276, 308
Sau3AI	GATC	1 cut(s)	342
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	4 cut(s)	31, 40, 127, 304
SfaNI	GCATC	1 cut(s)	71
Sse9I	AATT	3 cut(s)	9, 204, 266
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	3 cut(s)	31, 73, 208
TasI	AATT	3 cut(s)	9, 204, 266
TatI	WGTACW	1 cut(s)	255
Tru1I	TTAA	4 cut(s)	12, 242, 276, 308
Tru9I	TTAA	4 cut(s)	12, 242, 276, 308
TspGWI	ACGGA	1 cut(s)	41
XmiI	GTMKAC	2 cut(s)	154, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.