ATCG00730

Cytochrome b6-f complex subunit 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Pt
OG0019578
Physical Location & Seq
Forward (+)
76481 .. 77672
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
ATCG00730.1

Sequence Viewer

Length: 483 bp
ATGGGAGTAACAAAAAAACCAGATTTGAATGATCCTGTATTACGAGCTAAATTAGCTAAAGGTATGGGTCACAATTATTACGGGGAACCCGCATGGCCCAACGACCTTTTATATATTTTTCCAGTAGTTATTCTTGGTACCATTGCCTGTAACGTAGGCTTAGCGGTTTTAGAACCATCAATGATTGGTGAACCTGCGGATCCTTTTGCAACTCCTTTGGAAATATTACCTGAATGGTATTTCTTTCCTGTATTTCAAATACTTCGTACAGTGCCTAACAAATTATTGGGTGTTCTTTTAATGGTTTCAGTACCAGCGGGATTATTAACCGTACCCTTTTTGGAAAATGTTAATAAGTTTCAAAATCCATTTCGTCGTCCAGTAGCGACAACCGTCTTTTTGATTGGCACCGCGGCGGCCCTGTGGTTAGGTATTGGAGCAACATTACCGATTGATAAATCTCTAACTTTAGGTCTTTTTTAA

Protein Analysis

160

Amino Acids

17.43

Weight (kDa)

6.56

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_B_C PF00032 65 - 155 1.1e-19 Cytochrome b(C-terminal)/b6/petD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019578)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG00730
malus_domestica MD16G1017300.v1.1
pyrus_communis pycom12397g00180
rosa_chinensis RchiOBHm_Chr3g0476911 RchiOBHm_CPg0501911 RchiOBHm_CPg0501931
rosa_wichuraiana Rw7G013570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 202
Acc65I GGTACC 1 cut(s) 137
AccB1I GGYRCC 2 cut(s) 137, 407
AccII CGCG 1 cut(s) 413
AciI CCGC 7 cut(s) 90, 164, 197, 317, 411, 413, 416
AclWI GGATC 3 cut(s) 26, 194, 207
AfaI GTAC 4 cut(s) 139, 268, 312, 333
AgsI TTSAA 3 cut(s) 28, 257, 362
AluBI AGCT 2 cut(s) 47, 56
AluI AGCT 2 cut(s) 47, 56
AlwI GGATC 3 cut(s) 26, 194, 207
AoxI GGCC 2 cut(s) 95, 417
Asp718I GGTACC 1 cut(s) 137
AspS9I GGNCC 2 cut(s) 96, 418
AsuHPI GGTGA 1 cut(s) 200
BamHI GGATCC 1 cut(s) 199
BanI GGYRCC 2 cut(s) 137, 407
BccI CCATC 1 cut(s) 184
BfuAI ACCTGC 1 cut(s) 202
BisI GCNGC 2 cut(s) 414, 417
BlpI GCTNAGC 1 cut(s) 160
BlsI GCNGC 2 cut(s) 415, 418
BmgT120I GGNCC 2 cut(s) 96, 418
BmiI GGNNCC 4 cut(s) 87, 139, 201, 409
BoxI GACNNNNGTC 1 cut(s) 392
Bpu1102I GCTNAGC 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 411
Bse1I ACTGG 2 cut(s) 122, 380
Bse3DI GCAATG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 411
BseMI GCAATG 1 cut(s) 141
BseNI ACTGG 2 cut(s) 122, 380
Bsh1236I CGCG 1 cut(s) 413
BshFI GGCC 2 cut(s) 97, 419
BshNI GGYRCC 2 cut(s) 137, 407
BsnI GGCC 2 cut(s) 97, 419
Bsp143I GATC 2 cut(s) 31, 199
Bsp1720I GCTNAGC 1 cut(s) 160
BspACI CCGC 7 cut(s) 90, 164, 197, 317, 411, 413, 416
BspANI GGCC 2 cut(s) 97, 419
BspFNI CGCG 1 cut(s) 413
BspLI GGNNCC 4 cut(s) 87, 139, 201, 409
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 3 cut(s) 26, 194, 207
BspT107I GGYRCC 2 cut(s) 137, 407
BsrDI GCAATG 1 cut(s) 141
BsrI ACTGG 2 cut(s) 122, 380
BssECI CCNNGG 1 cut(s) 411
BssMI GATC 2 cut(s) 31, 199
Bst4CI ACNGT 3 cut(s) 271, 331, 394
BstDEI CTNAG 1 cut(s) 160
BstDSI CCRYGG 1 cut(s) 411
BstFNI CGCG 1 cut(s) 413
BstKTI GATC 2 cut(s) 34, 202
BstMBI GATC 2 cut(s) 31, 199
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstPAI GACNNNNGTC 1 cut(s) 392
BstUI CGCG 1 cut(s) 413
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BsuRI GGCC 2 cut(s) 97, 419
BtgI CCRYGG 1 cut(s) 411
BtsIMutI CAGTG 1 cut(s) 276
BveI ACCTGC 1 cut(s) 202
Cfr13I GGNCC 2 cut(s) 96, 418
Cfr42I CCGCGG 1 cut(s) 414
Csp6I GTAC 4 cut(s) 138, 267, 311, 332
CviAII CATG 1 cut(s) 93
CviJI RGCY 5 cut(s) 47, 56, 97, 159, 419
CviKI_1 RGCY 5 cut(s) 47, 56, 97, 159, 419
CviQI GTAC 4 cut(s) 138, 267, 311, 332
DdeI CTNAG 1 cut(s) 160
DpnI GATC 2 cut(s) 33, 201
DpnII GATC 2 cut(s) 31, 199
FaeI CATG 1 cut(s) 96
FaiI YATR 4 cut(s) 65, 94, 112, 114
FatI CATG 1 cut(s) 92
FauI CCCGC 2 cut(s) 97, 310
Fnu4HI GCNGC 2 cut(s) 414, 417
Fsp4HI GCNGC 2 cut(s) 414, 417
GluI GCNGC 2 cut(s) 414, 417
HaeIII GGCC 2 cut(s) 97, 419
Hin1II CATG 1 cut(s) 96
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 191
Hpy99I CGWCG 1 cut(s) 378
HpyCH4III ACNGT 3 cut(s) 271, 331, 394
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 1 cut(s) 160
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 1 cut(s) 96
KpnI GGTACC 1 cut(s) 141
KspI CCGCGG 1 cut(s) 414
Kzo9I GATC 2 cut(s) 31, 199
LmnI GCTCC 1 cut(s) 437
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 3 cut(s) 7, 68, 149
MalI GATC 2 cut(s) 33, 201
MboI GATC 2 cut(s) 31, 199
MflI RGATCY 1 cut(s) 199
MluCI AATT 3 cut(s) 50, 73, 281
MseI TTAA 4 cut(s) 299, 326, 351, 481
MspA1I CMGCKG 2 cut(s) 317, 413
MvnI CGCG 1 cut(s) 413
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 2 cut(s) 31, 199
NlaIII CATG 1 cut(s) 96
NlaIV GGNNCC 4 cut(s) 87, 139, 201, 409
NmuCI GTSAC 1 cut(s) 68
PkrI GCNGC 2 cut(s) 415, 418
PshAI GACNNNNGTC 1 cut(s) 392
PspN4I GGNNCC 4 cut(s) 87, 139, 201, 409
PspPI GGNCC 2 cut(s) 96, 418
PsuI RGATCY 1 cut(s) 199
RsaI GTAC 4 cut(s) 139, 268, 312, 333
RsaNI GTAC 4 cut(s) 138, 267, 311, 332
SacII CCGCGG 1 cut(s) 414
SaqAI TTAA 4 cut(s) 299, 326, 351, 481
SatI GCNGC 2 cut(s) 414, 417
Sau3AI GATC 2 cut(s) 31, 199
Sau96I GGNCC 2 cut(s) 96, 418
SetI ASST 9 cut(s) 49, 58, 64, 108, 156, 196, 232, 433, 475
Sfr303I CCGCGG 1 cut(s) 414
SgrBI CCGCGG 1 cut(s) 414
Sse9I AATT 3 cut(s) 50, 73, 281
SsiI CCGC 7 cut(s) 90, 164, 197, 317, 411, 413, 416
SspI AATATT 1 cut(s) 225
TaaI ACNGT 3 cut(s) 271, 331, 394
TaiI ACGT 1 cut(s) 156
TasI AATT 3 cut(s) 50, 73, 281
TauI GCSGC 2 cut(s) 416, 419
Tru1I TTAA 4 cut(s) 299, 326, 351, 481
Tru9I TTAA 4 cut(s) 299, 326, 351, 481
TscAI CASTG 1 cut(s) 276
TseFI GTSAC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 68
TspRI CASTG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.