Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012397

Orthogroup ID

OG0019578

Physical Location & Seq

Genomic Coordinates Reverse (-)

103631 .. 104837

Gene Structure 1207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12397g00180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGAGTAACAAAAAAACCTGACTTGAACGATCCTGTGTTAAGAGCTAAATTGGCTAAAGGGATGGGTCATAATTATTACGGAGAGCCCGCATGGCCAAATGATCTTTTATATATTTTTCCAGTAGTAATTTTAGGTACTATTGCATGTAACGTAGGCTTAGCGGTTCTAGAACCATCAATGATTGGTGAACCCGCGGATCCATTTGCAACTCCTTTGGAAATATTGCCTGAATGGTATTTCTTTCCCGTATTTCAAATACTTCGTACAGTGCCAAATAAGTTATTGGGCGTTCTTTTAATGGTTTCAGTACCTGCGGGATTATTAACAGTACCTTTTTTGGAGAATGTTAATAAATTCCAAAATCCATTTCGTCGTCCCGTAGCGACAACCGTCTTTTTGATTGGTACTGTAGTAGCCCTTTGGTTGGGTATTGGAGCAACACTACCTATTGATAAGTCCTTAACTTTAGGTCTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

Cytochrom_B_C

Protein Analysis

161

Amino Acids

17.49

Weight (kDa)

6.56

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cytochrom_B_C	PF00032	65 - 154	9.6e-20	Cytochrome b(C-terminal)/b6/petD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00730
malus_domestica	MD16G1017300.v1.1
pyrus_communis	pycom12397g00180
rosa_chinensis	RchiOBHm_Chr3g0476911 RchiOBHm_CPg0501911 RchiOBHm_CPg0501931
rosa_wichuraiana	Rw7G013570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	322
AccII	CGCG	1 cut(s)	197
AciI	CCGC	5 cut(s)	90, 164, 195, 197, 317
AclWI	GGATC	3 cut(s)	26, 194, 207
AcoI	YGGCCR	1 cut(s)	95
AcsI	RAATTY	1 cut(s)	356
AfaI	GTAC	5 cut(s)	139, 268, 312, 333, 409
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgsI	TTSAA	2 cut(s)	28, 257
AjuI	GAANNNNNNNTTGG	2 cut(s)	354, 386
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
AlwI	GGATC	3 cut(s)	26, 194, 207
AlwNI	CAGNNNCTG	1 cut(s)	314
AoxI	GGCC	1 cut(s)	95
ApoI	RAATTY	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	200
BaeI	ACNNNNGTAYC	2 cut(s)	399, 432
BalI	TGGCCA	1 cut(s)	97
BamHI	GGATCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	90
BccI	CCATC	2 cut(s)	58, 184
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	411
BfuAI	ACCTGC	1 cut(s)	322
BglI	GCCNNNNNGGC	1 cut(s)	94
BlpI	GCTNAGC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	201
BoxI	GACNNNNGTC	1 cut(s)	392
Bpu1102I	GCTNAGC	1 cut(s)	160
BsaJI	CCNNGG	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse1I	ACTGG	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseNI	ACTGG	1 cut(s)	122
Bsh1236I	CGCG	1 cut(s)	197
BshFI	GGCC	1 cut(s)	97
BslFI	GGGAC	1 cut(s)	363
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmFI	GGGAC	1 cut(s)	363
BsnI	GGCC	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	3 cut(s)	31, 103, 199
Bsp1720I	GCTNAGC	1 cut(s)	160
BspACI	CCGC	5 cut(s)	90, 164, 195, 197, 317
BspANI	GGCC	1 cut(s)	97
BspFNI	CGCG	1 cut(s)	197
BspLI	GGNNCC	1 cut(s)	201
BspMI	ACCTGC	1 cut(s)	322
BspPI	GGATC	3 cut(s)	26, 194, 207
BsrI	ACTGG	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	3 cut(s)	31, 103, 199
Bst4CI	ACNGT	4 cut(s)	271, 331, 394, 412
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	160
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	69
BstFNI	CGCG	1 cut(s)	197
BstKTI	GATC	3 cut(s)	34, 106, 202
BstMBI	GATC	3 cut(s)	31, 103, 199
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 94
BstNSI	RCATGY	1 cut(s)	150
BstPAI	GACNNNNGTC	1 cut(s)	392
BstSFI	CTRYAG	1 cut(s)	411
BstUI	CGCG	1 cut(s)	197
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	97
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	276
BveI	ACCTGC	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	90
CaiI	CAGNNNCTG	1 cut(s)	314
Cfr42I	CCGCGG	1 cut(s)	198
Csp6I	GTAC	5 cut(s)	138, 267, 311, 332, 408
CviAII	CATG	2 cut(s)	93, 147
CviJI	RGCY	6 cut(s)	47, 56, 88, 97, 159, 419
CviKI_1	RGCY	6 cut(s)	47, 56, 88, 97, 159, 419
CviQI	GTAC	5 cut(s)	138, 267, 311, 332, 408
DdeI	CTNAG	1 cut(s)	160
DpnI	GATC	3 cut(s)	33, 105, 201
DpnII	GATC	3 cut(s)	31, 103, 199
EaeI	YGGCCR	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	90
FaeI	CATG	2 cut(s)	96, 150
FaiI	YATR	5 cut(s)	72, 94, 112, 114, 148
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	2 cut(s)	92, 146
FauI	CCCGC	3 cut(s)	97, 202, 310
FokI	GGATG	1 cut(s)	76
FriOI	GRGCYC	1 cut(s)	90
FspBI	CTAG	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	97
Hin1II	CATG	2 cut(s)	96, 150
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	1 cut(s)	191
Hpy99I	CGWCG	1 cut(s)	378
HpyCH4III	ACNGT	4 cut(s)	271, 331, 394, 412
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	2 cut(s)	146, 209
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 94
HpyF3I	CTNAG	1 cut(s)	160
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	2 cut(s)	96, 150
KspI	CCGCGG	1 cut(s)	198
Kzo9I	GATC	3 cut(s)	31, 103, 199
LmnI	GCTCC	1 cut(s)	437
LpnPI	CCDG	5 cut(s)	33, 48, 135, 243, 327
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	7, 149
MalI	GATC	3 cut(s)	33, 105, 201
MboI	GATC	3 cut(s)	31, 103, 199
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	90
MlsI	TGGCCA	1 cut(s)	97
MluCI	AATT	4 cut(s)	50, 73, 129, 356
MluNI	TGGCCA	1 cut(s)	97
Mox20I	TGGCCA	1 cut(s)	97
MscI	TGGCCA	1 cut(s)	97
MseI	TTAA	6 cut(s)	41, 299, 326, 351, 464, 481
Msp20I	TGGCCA	1 cut(s)	97
MspA1I	CMGCKG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	53, 94
NdeII	GATC	3 cut(s)	31, 103, 199
NlaIII	CATG	2 cut(s)	96, 150
NlaIV	GGNNCC	1 cut(s)	201
NspI	RCATGY	1 cut(s)	150
PshAI	GACNNNNGTC	1 cut(s)	392
PspN4I	GGNNCC	1 cut(s)	201
PstNI	CAGNNNCTG	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	5 cut(s)	139, 268, 312, 333, 409
RsaNI	GTAC	5 cut(s)	138, 267, 311, 332, 408
SacII	CCGCGG	1 cut(s)	198
SaqAI	TTAA	6 cut(s)	41, 299, 326, 351, 464, 481
Sau3AI	GATC	3 cut(s)	31, 103, 199
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	8 cut(s)	22, 49, 139, 156, 316, 337, 451, 475
SfcI	CTRYAG	1 cut(s)	411
Sfr303I	CCGCGG	1 cut(s)	198
SgrBI	CCGCGG	1 cut(s)	198
Sse9I	AATT	4 cut(s)	50, 73, 129, 356
SsiI	CCGC	5 cut(s)	90, 164, 195, 197, 317
SspI	AATATT	1 cut(s)	225
SspMI	CTAG	1 cut(s)	170
TaaI	ACNGT	4 cut(s)	271, 331, 394, 412
TaiI	ACGT	1 cut(s)	156
TasI	AATT	4 cut(s)	50, 73, 129, 356
Tru1I	TTAA	6 cut(s)	41, 299, 326, 351, 464, 481
Tru9I	TTAA	6 cut(s)	41, 299, 326, 351, 464, 481
TscAI	CASTG	1 cut(s)	276
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	276
XapI	RAATTY	1 cut(s)	356
XbaI	TCTAGA	1 cut(s)	169
XceI	RCATGY	1 cut(s)	150
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.