ATCG00900

One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Pt
OG0018726
Physical Location & Seq
Reverse (-)
97478 .. 97945
468 bp
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UTR
Exon/CDS
Intron
ATCG00900.1

Sequence Viewer

Length: 468 bp
ATGTCACGCCGAGGTACTGCAGAAGAAAAAACTGCAAAATCCGATCCAATTTATCGTAATCGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCCTTGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGTGTAGGCGGGTCAACTCATCAAGTTCCCATTGAAATAGGATCCACGCAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA

Protein Analysis

155

Amino Acids

17.36

Weight (kDa)

11.28

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S7 PF00177 2 - 149 1e-54 Ribosomal protein S7p/S5e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018726)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG00900 ATCG01240
malus_domestica MD01G1004700.v1.1
rosa_chinensis RchiOBHm_Chr7g0221081
rosa_laevigata RLG00000037095
rosa_roxburghii Rroxscaffold_2G00119210 Rroxscaffold_4G00323470
rosa_samantha Rh1CG032000 Rh5BG347900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 306
AciI CCGC 1 cut(s) 243
AclWI GGATC 3 cut(s) 38, 270, 283
AfaI GTAC 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 306
AflIII ACRYGT 2 cut(s) 72, 235
AgsI TTSAA 4 cut(s) 142, 152, 269, 355
AjiI CACGTC 1 cut(s) 236
AluBI AGCT 1 cut(s) 449
AluI AGCT 1 cut(s) 449
Alw26I GTCTC 1 cut(s) 413
AlwI GGATC 3 cut(s) 38, 270, 283
ApeKI GCWGC 1 cut(s) 380
AsuC2I CCSGG 1 cut(s) 336
BamHI GGATCC 1 cut(s) 275
BbvI GCAGC 1 cut(s) 367
BcnI CCSGG 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 413
BfmI CTRYAG 1 cut(s) 18
BisI GCNGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 382
Bme1390I CCNGG 1 cut(s) 336
BmgBI CACGTC 1 cut(s) 236
BmiI GGNNCC 1 cut(s) 277
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 3 cut(s) 329, 367, 388
BpuMI CCSGG 1 cut(s) 336
Bsa29I ATCGAT 1 cut(s) 61
BsaAI YACGTR 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 10
Bsc4I CCNNNNNNNGG 1 cut(s) 306
BseCI ATCGAT 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 2 cut(s) 320, 382
BseLI CCNNNNNNNGG 1 cut(s) 306
BseXI GCAGC 1 cut(s) 367
BshVI ATCGAT 1 cut(s) 61
BsiSI CCGG 1 cut(s) 335
BslI CCNNNNNNNGG 1 cut(s) 306
BsmAI GTCTC 1 cut(s) 413
Bsp143I GATC 2 cut(s) 43, 275
BspACI CCGC 1 cut(s) 243
BspDI ATCGAT 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 277
BspMAI CTGCAG 1 cut(s) 22
BspPI GGATC 3 cut(s) 38, 270, 283
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 2 cut(s) 43, 275
Bst4CI ACNGT 1 cut(s) 86
Bst6I CTCTTC 1 cut(s) 411
BstBAI YACGTR 1 cut(s) 200
BstF5I GGATG 2 cut(s) 320, 382
BstKTI GATC 2 cut(s) 46, 278
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 2 cut(s) 43, 275
BstMWI GCNNNNNNNGC 2 cut(s) 227, 446
BstNSI RCATGY 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 334
BstSFI CTRYAG 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 367
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
Bsu15I ATCGAT 1 cut(s) 61
BsuTUI ATCGAT 1 cut(s) 61
BtgZI GCGATG 1 cut(s) 411
BtrI CACGTC 1 cut(s) 236
BtsCI GGATG 2 cut(s) 320, 382
ClaI ATCGAT 1 cut(s) 61
Csp6I GTAC 1 cut(s) 15
CspCI CAANNNNNGTGG 2 cut(s) 373, 408
CviAII CATG 1 cut(s) 73
CviJI RGCY 4 cut(s) 116, 137, 350, 449
CviKI_1 RGCY 4 cut(s) 116, 137, 350, 449
CviQI GTAC 1 cut(s) 15
DpnI GATC 2 cut(s) 45, 277
DpnII GATC 2 cut(s) 43, 275
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
FaeI CATG 1 cut(s) 76
FaiI YATR 5 cut(s) 74, 218, 347, 404, 426
FatI CATG 1 cut(s) 72
FauI CCCGC 1 cut(s) 236
Fnu4HI GCNGC 1 cut(s) 381
FokI GGATG 2 cut(s) 307, 389
Fsp4HI GCNGC 1 cut(s) 381
GluI GCNGC 1 cut(s) 381
HapII CCGG 1 cut(s) 335
Hin1II CATG 1 cut(s) 76
HincII GTYRAC 3 cut(s) 70, 82, 249
HindII GTYRAC 3 cut(s) 70, 82, 249
HinfI GANTC 2 cut(s) 148, 421
HpaI GTTAAC 2 cut(s) 70, 82
HpaII CCGG 1 cut(s) 335
Hpy166II GTNNAC 3 cut(s) 70, 82, 249
Hpy188I TCNGA 3 cut(s) 43, 93, 367
Hpy188III TCNNGA 2 cut(s) 212, 324
Hpy8I GTNNAC 3 cut(s) 70, 82, 249
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4IV ACGT 4 cut(s) 187, 199, 235, 331
HpyCH4V TGCA 3 cut(s) 20, 35, 455
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 446
HpySE526I ACGT 4 cut(s) 187, 199, 235, 331
Hsp92II CATG 1 cut(s) 76
KspAI GTTAAC 2 cut(s) 70, 82
Kzo9I GATC 2 cut(s) 43, 275
LpnPI CCDG 1 cut(s) 348
Lsp1109I GCAGC 1 cut(s) 367
LweI GCATC 3 cut(s) 329, 367, 388
MaeII ACGT 4 cut(s) 187, 199, 235, 331
MaeIII GTNAC 2 cut(s) 3, 205
MalI GATC 2 cut(s) 45, 277
MboI GATC 2 cut(s) 43, 275
MboII GAAGA 2 cut(s) 35, 428
MflI RGATCY 1 cut(s) 275
MluCI AATT 4 cut(s) 48, 123, 356, 368
MlyI GAGTC 1 cut(s) 415
MnlI CCTC 2 cut(s) 5, 430
MseI TTAA 4 cut(s) 69, 81, 359, 466
MspI CCGG 1 cut(s) 335
MspR9I CCNGG 1 cut(s) 336
MwoI GCNNNNNNNGC 2 cut(s) 227, 446
NciI CCSGG 1 cut(s) 336
NdeII GATC 2 cut(s) 43, 275
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 277
NmeAIII GCCGAG 1 cut(s) 35
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 76
PciI ACATGT 1 cut(s) 72
PcsI WCGNNNNNNNCGW 1 cut(s) 337
PfeI GAWTC 1 cut(s) 148
PflMI CCANNNNNTGG 1 cut(s) 306
PkrI GCNGC 1 cut(s) 382
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
Ppu21I YACGTR 1 cut(s) 200
PscI ACATGT 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 277
PstI CTGCAG 1 cut(s) 22
PsuI RGATCY 1 cut(s) 275
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
SaqAI TTAA 4 cut(s) 69, 81, 359, 466
SatI GCNGC 1 cut(s) 381
Sau3AI GATC 2 cut(s) 43, 275
SchI GAGTC 1 cut(s) 415
ScrFI CCNGG 1 cut(s) 336
SetI ASST 6 cut(s) 16, 190, 202, 238, 334, 451
SfaNI GCATC 3 cut(s) 329, 367, 388
SfcI CTRYAG 1 cut(s) 18
Sse9I AATT 4 cut(s) 48, 123, 356, 368
SsiI CCGC 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 334
TaaI ACNGT 1 cut(s) 86
TaiI ACGT 4 cut(s) 190, 202, 238, 334
TaqI TCGA 3 cut(s) 61, 133, 340
TasI AATT 4 cut(s) 48, 123, 356, 368
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 4 cut(s) 69, 81, 359, 466
Tru9I TTAA 4 cut(s) 69, 81, 359, 466
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 380
Tsp45I GTSAC 1 cut(s) 3
TspGWI ACGGA 1 cut(s) 114
Van91I CCANNNNNTGG 1 cut(s) 306
XceI RCATGY 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.