Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0018726

Physical Location & Seq

Genomic Coordinates Reverse (-)

1483977 .. 1484198

Gene Structure 222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1004700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGAAAAGGATTCAACAAAAGACAGAAACAAATCCGTTATTTATTTTACGTCAAGTAATACTTGGAGTAACTCCCGATATAGCAGCAAAAGCAAGAAGTGTAGGTAGATTGATTGATCAAGTTTCCATTGAAATAGGATCCATACAAGTAAAAGCACTTGCCATTCGTTGGTTATTCGGAGCATCTAAAAACGTCCAGGTCGAAATATGGTTTTCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosom_S12_S23 Ribosomal_S7

Protein Analysis

74

Amino Acids

8.21

Weight (kDa)

10.52

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7	PF00177	1 - 64	1.6e-09	Ribosomal protein S7p/S5e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00900 ATCG01240
malus_domestica	MD01G1004700.v1.1
rosa_chinensis	RchiOBHm_Chr7g0221081
rosa_laevigata	RLG00000037095
rosa_roxburghii	Rroxscaffold_2G00119210 Rroxscaffold_4G00323470
rosa_samantha	Rh1CG032000 Rh5BG347900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	168
AclWI	GGATC	2 cut(s)	132, 145
AfiI	CCNNNNNNNGG	1 cut(s)	168
AgsI	TTSAA	3 cut(s)	14, 131, 216
AjnI	CCWGG	1 cut(s)	195
AlwI	GGATC	2 cut(s)	132, 145
ApeKI	GCWGC	1 cut(s)	83
BamHI	GGATCC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	197
BclI	TGATCA	1 cut(s)	115
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
Bme1390I	CCNGG	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	197
BmsI	GCATC	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	197
BseLI	CCNNNNNNNGG	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	168
Bsp143I	GATC	2 cut(s)	115, 137
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	2 cut(s)	132, 145
BssMI	GATC	2 cut(s)	115, 137
Bst2UI	CCWGG	1 cut(s)	197
BstKTI	GATC	2 cut(s)	118, 140
BstMBI	GATC	2 cut(s)	115, 137
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	95
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
DpnI	GATC	2 cut(s)	117, 139
DpnII	GATC	2 cut(s)	115, 137
EcoRII	CCWGG	1 cut(s)	195
FaiI	YATR	3 cut(s)	80, 143, 208
FalI	AAGNNNNNCTT	2 cut(s)	45, 77
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	84
Fsp4HI	GCNGC	1 cut(s)	84
GluI	GCNGC	1 cut(s)	84
HinfI	GANTC	1 cut(s)	10
Hpy188I	TCNGA	1 cut(s)	179
Hpy188III	TCNNGA	1 cut(s)	74
HpyCH4IV	ACGT	2 cut(s)	49, 192
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpySE526I	ACGT	2 cut(s)	49, 192
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	115, 137
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	2 cut(s)	182, 209
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	1 cut(s)	191
MaeII	ACGT	2 cut(s)	49, 192
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	2 cut(s)	117, 139
MboI	GATC	2 cut(s)	115, 137
MflI	RGATCY	1 cut(s)	137
MluCI	AATT	1 cut(s)	217
MseI	TTAA	1 cut(s)	220
MspR9I	CCNGG	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	89
NdeII	GATC	2 cut(s)	115, 137
NlaIV	GGNNCC	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	10
PflMI	CCANNNNNTGG	1 cut(s)	168
PkrI	GCNGC	1 cut(s)	85
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	220
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	2 cut(s)	115, 137
ScrFI	CCNGG	1 cut(s)	197
SetI	ASST	4 cut(s)	52, 106, 195, 201
SfaNI	GCATC	1 cut(s)	191
SgeI	CNNG	9 cut(s)	65, 74, 86, 105, 131, 158, 170, 208, 209
Sse9I	AATT	1 cut(s)	217
StyD4I	CCNGG	1 cut(s)	195
TaiI	ACGT	2 cut(s)	52, 195
TaqI	TCGA	1 cut(s)	201
TasI	AATT	1 cut(s)	217
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	220
Tru9I	TTAA	1 cut(s)	220
TseI	GCWGC	1 cut(s)	83
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	24
Van91I	CCANNNNNTGG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.