Rroxscaffold_4G00323470

One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0018726
Physical Location & Seq
Forward (+)
54208688 .. 54209372
685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00323470.1

Sequence Viewer

Length: 342 bp
ATGTTGGTTAACCGTATTCTGAAACACGGAAAAAAATCATTGGCATATCAAATTATCTATCGAGCCATGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCCGGATATAGCAGTAAAAGCAAGACGTGTAGGCGGATCGACTCATCAAGTTCCCATTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTTGTTGGTTATTAGGGGCATCTCGAAAACGTCCAGTACAGAGTCGGTGTGCATGTGTGGAAGAGCGAGATGGGAGAAGAAGGCTGCGGGGCTCTAATGATGTTGAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S7

Protein Analysis

113

Amino Acids

12.63

Weight (kDa)

10.95

Isoelectric Point (pI)

53.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S7 PF00177 1 - 91 3.2e-30 Ribosomal protein S7p/S5e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018726)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG00900 ATCG01240
malus_domestica MD01G1004700.v1.1
rosa_chinensis RchiOBHm_Chr7g0221081
rosa_laevigata RLG00000037095
rosa_roxburghii Rroxscaffold_2G00119210 Rroxscaffold_4G00323470
rosa_samantha Rh1CG032000 Rh5BG347900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 234
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 2 cut(s) 171, 316
AclWI GGATC 3 cut(s) 181, 198, 211
AfaI GTAC 1 cut(s) 267
AfiI CCNNNNNNNGG 1 cut(s) 234
AflIII ACRYGT 1 cut(s) 163
AgsI TTSAA 2 cut(s) 80, 197
AjiI CACGTC 1 cut(s) 164
Alw26I GTCTC 1 cut(s) 329
AlwI GGATC 3 cut(s) 181, 198, 211
Aor13HI TCCGGA 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 313
BamHI GGATCC 1 cut(s) 203
BanII GRGCYC 1 cut(s) 323
BbvI GCAGC 1 cut(s) 300
BccI CCATC 1 cut(s) 293
BcoDI GTCTC 1 cut(s) 329
BisI GCNGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 315
BmgBI CACGTC 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 205
BmsI GCATC 1 cut(s) 257
BsaAI YACGTR 1 cut(s) 128
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse1I ACTGG 1 cut(s) 263
BseAI TCCGGA 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 263
BseXI GCAGC 1 cut(s) 300
BsiSI CCGG 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 234
BsmAI GTCTC 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 323
Bsp13I TCCGGA 1 cut(s) 139
Bsp143I GATC 2 cut(s) 173, 203
BspACI CCGC 2 cut(s) 171, 316
BspEI TCCGGA 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 205
BspPI GGATC 3 cut(s) 181, 198, 211
BspQI GCTCTTC 1 cut(s) 285
BsrI ACTGG 1 cut(s) 263
BssMI GATC 2 cut(s) 173, 203
Bst4CI ACNGT 1 cut(s) 14
Bst6I CTCTTC 1 cut(s) 285
BstBAI YACGTR 1 cut(s) 128
BstKTI GATC 2 cut(s) 176, 206
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 2 cut(s) 173, 203
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNSI RCATGY 1 cut(s) 285
BstV1I GCAGC 1 cut(s) 300
BstX2I RGATCY 1 cut(s) 203
BstYI RGATCY 1 cut(s) 203
BtrI CACGTC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 266
CviAII CATG 2 cut(s) 67, 282
CviJI RGCY 3 cut(s) 65, 313, 321
CviKI_1 RGCY 3 cut(s) 65, 313, 321
CviQI GTAC 1 cut(s) 266
DpnI GATC 2 cut(s) 175, 205
DpnII GATC 2 cut(s) 173, 203
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
EciI GGCGGA 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 323
EcoT38I GRGCYC 1 cut(s) 323
FaeI CATG 2 cut(s) 70, 285
FaiI YATR 4 cut(s) 46, 68, 146, 283
FatI CATG 2 cut(s) 66, 281
FauI CCCGC 1 cut(s) 309
Fnu4HI GCNGC 1 cut(s) 314
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 1 cut(s) 314
GluI GCNGC 1 cut(s) 314
HapII CCGG 1 cut(s) 140
Hin1II CATG 2 cut(s) 70, 285
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HinfI GANTC 3 cut(s) 76, 178, 271
HpaI GTTAAC 1 cut(s) 10
HpaII CCGG 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 2 cut(s) 140, 252
Hpy8I GTNNAC 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 303
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4IV ACGT 4 cut(s) 115, 127, 163, 259
HpyCH4V TGCA 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpySE526I ACGT 4 cut(s) 115, 127, 163, 259
Hsp92II CATG 2 cut(s) 70, 285
Kpn2I TCCGGA 1 cut(s) 139
KspAI GTTAAC 1 cut(s) 10
Kzo9I GATC 2 cut(s) 173, 203
LguI GCTCTTC 1 cut(s) 285
LpnPI CCDG 2 cut(s) 153, 276
Lsp1109I GCAGC 1 cut(s) 300
LweI GCATC 1 cut(s) 257
MaeII ACGT 4 cut(s) 115, 127, 163, 259
MaeIII GTNAC 1 cut(s) 133
MalI GATC 2 cut(s) 175, 205
MboI GATC 2 cut(s) 173, 203
MboII GAAGA 2 cut(s) 302, 318
MflI RGATCY 1 cut(s) 203
MhlI GDGCHC 1 cut(s) 323
MluCI AATT 1 cut(s) 51
MlyI GAGTC 2 cut(s) 172, 280
MroI TCCGGA 1 cut(s) 139
MseI TTAA 1 cut(s) 9
MspI CCGG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 2 cut(s) 173, 203
NlaIII CATG 2 cut(s) 70, 285
NlaIV GGNNCC 1 cut(s) 205
NspI RCATGY 1 cut(s) 285
PciSI GCTCTTC 1 cut(s) 285
PfeI GAWTC 1 cut(s) 76
PflMI CCANNNNNTGG 1 cut(s) 234
PkrI GCNGC 1 cut(s) 315
PleI GAGTC 2 cut(s) 172, 279
PpsI GAGTC 2 cut(s) 172, 279
Ppu21I YACGTR 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 205
PsuI RGATCY 1 cut(s) 203
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
SapI GCTCTTC 1 cut(s) 285
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 1 cut(s) 314
Sau3AI GATC 2 cut(s) 173, 203
SchI GAGTC 2 cut(s) 172, 280
SduI GDGCHC 1 cut(s) 323
SetI ASST 4 cut(s) 118, 130, 166, 262
SfaNI GCATC 1 cut(s) 257
Sse9I AATT 1 cut(s) 51
SsiI CCGC 2 cut(s) 171, 316
TaaI ACNGT 1 cut(s) 14
TaiI ACGT 4 cut(s) 118, 130, 166, 262
TaqI TCGA 3 cut(s) 61, 176, 253
TasI AATT 1 cut(s) 51
TatI WGTACW 1 cut(s) 265
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TseI GCWGC 1 cut(s) 313
TspDTI ATGAA 1 cut(s) 83
TspGWI ACGGA 1 cut(s) 42
Van91I CCANNNNNTGG 1 cut(s) 234
XceI RCATGY 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.