Rh1CG032000

ribosomal protein S7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0018726
Physical Location & Seq
Forward (+)
6280295 .. 6280762
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG032000.1

Sequence Viewer

Length: 468 bp
ATGTCACGTCGAGGTACTGCAGAAGAAAAAACTGCAAAATCCGATCCAATTTATCGTAATCGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCCATGAAAAAGATTCAACAAAAGATAGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCCGGATATAGCAGTAAAAGCAAGACGTGTACGCGGATCGACTCATCAAGTTCCCATTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCTCGAAAACGTCCAGGTCGAAATATGGTTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAATGGGAGTGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGTAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S7

Protein Analysis

155

Amino Acids

17.53

Weight (kDa)

11.38

Isoelectric Point (pI)

35.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S7 PF00177 2 - 149 4e-51 Ribosomal protein S7p/S5e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018726)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG00900 ATCG01240
malus_domestica MD01G1004700.v1.1
rosa_chinensis RchiOBHm_Chr7g0221081
rosa_laevigata RLG00000037095
rosa_roxburghii Rroxscaffold_2G00119210 Rroxscaffold_4G00323470
rosa_samantha Rh1CG032000 Rh5BG347900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 306
AccII CGCG 1 cut(s) 243
AccIII TCCGGA 1 cut(s) 211
AciI CCGC 1 cut(s) 243
AclWI GGATC 4 cut(s) 38, 253, 270, 283
AfaI GTAC 2 cut(s) 16, 240
AfiI CCNNNNNNNGG 1 cut(s) 306
AflIII ACRYGT 2 cut(s) 72, 235
AgsI TTSAA 3 cut(s) 152, 269, 355
AjiI CACGTC 2 cut(s) 8, 236
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 1 cut(s) 449
AluI AGCT 1 cut(s) 449
Alw26I GTCTC 1 cut(s) 413
AlwI GGATC 4 cut(s) 38, 253, 270, 283
Aor13HI TCCGGA 1 cut(s) 211
ApeKI GCWGC 1 cut(s) 380
BamHI GGATCC 1 cut(s) 275
BbvI GCAGC 1 cut(s) 367
BciT130I CCWGG 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 413
BfmI CTRYAG 1 cut(s) 18
BisI GCNGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 382
Bme1390I CCNGG 1 cut(s) 336
BmgBI CACGTC 2 cut(s) 8, 236
BmiI GGNNCC 1 cut(s) 277
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 3 cut(s) 329, 367, 388
Bsa29I ATCGAT 1 cut(s) 61
BsaAI YACGTR 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 211
Bsc4I CCNNNNNNNGG 1 cut(s) 306
BseAI TCCGGA 1 cut(s) 211
BseBI CCWGG 1 cut(s) 336
BseCI ATCGAT 1 cut(s) 61
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 1 cut(s) 306
BseXI GCAGC 1 cut(s) 367
Bsh1236I CGCG 1 cut(s) 243
BshVI ATCGAT 1 cut(s) 61
BsiSI CCGG 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 306
BsmAI GTCTC 1 cut(s) 413
Bsp13I TCCGGA 1 cut(s) 211
Bsp143I GATC 3 cut(s) 43, 245, 275
BspACI CCGC 1 cut(s) 243
BspDI ATCGAT 1 cut(s) 61
BspEI TCCGGA 1 cut(s) 211
BspFNI CGCG 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 277
BspMAI CTGCAG 1 cut(s) 22
BspPI GGATC 4 cut(s) 38, 253, 270, 283
BssMI GATC 3 cut(s) 43, 245, 275
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 1 cut(s) 86
Bst6I CTCTTC 1 cut(s) 411
BstBAI YACGTR 1 cut(s) 200
BstF5I GGATG 1 cut(s) 382
BstFNI CGCG 1 cut(s) 243
BstKTI GATC 3 cut(s) 46, 248, 278
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 3 cut(s) 43, 245, 275
BstMWI GCNNNNNNNGC 2 cut(s) 227, 446
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 334
BstSFI CTRYAG 1 cut(s) 18
BstUI CGCG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 367
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
Bsu15I ATCGAT 1 cut(s) 61
BsuTUI ATCGAT 1 cut(s) 61
BtgZI GCGATG 1 cut(s) 411
BtrI CACGTC 2 cut(s) 8, 236
BtsCI GGATG 1 cut(s) 382
ClaI ATCGAT 1 cut(s) 61
Csp6I GTAC 2 cut(s) 15, 239
CspCI CAANNNNNGTGG 2 cut(s) 373, 408
CviAII CATG 2 cut(s) 73, 139
CviJI RGCY 3 cut(s) 116, 137, 449
CviKI_1 RGCY 3 cut(s) 116, 137, 449
CviQI GTAC 2 cut(s) 15, 239
DpnI GATC 3 cut(s) 45, 247, 277
DpnII GATC 3 cut(s) 43, 245, 275
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 334
FaeI CATG 2 cut(s) 76, 142
FaiI YATR 6 cut(s) 74, 140, 218, 347, 404, 426
FatI CATG 2 cut(s) 72, 138
Fnu4HI GCNGC 1 cut(s) 381
FokI GGATG 1 cut(s) 389
Fsp4HI GCNGC 1 cut(s) 381
GluI GCNGC 1 cut(s) 381
HapII CCGG 1 cut(s) 212
Hin1II CATG 2 cut(s) 76, 142
HincII GTYRAC 2 cut(s) 70, 82
HindII GTYRAC 2 cut(s) 70, 82
HinfI GANTC 3 cut(s) 148, 250, 421
HpaI GTTAAC 2 cut(s) 70, 82
HpaII CCGG 1 cut(s) 212
Hpy166II GTNNAC 3 cut(s) 70, 82, 239
Hpy188I TCNGA 3 cut(s) 43, 93, 367
Hpy188III TCNNGA 2 cut(s) 212, 324
Hpy8I GTNNAC 3 cut(s) 70, 82, 239
Hpy99I CGWCG 1 cut(s) 12
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4IV ACGT 5 cut(s) 7, 187, 199, 235, 331
HpyCH4V TGCA 3 cut(s) 20, 35, 455
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 446
HpySE526I ACGT 5 cut(s) 7, 187, 199, 235, 331
Hsp92II CATG 2 cut(s) 76, 142
Kpn2I TCCGGA 1 cut(s) 211
KspAI GTTAAC 2 cut(s) 70, 82
Kzo9I GATC 3 cut(s) 43, 245, 275
LpnPI CCDG 3 cut(s) 225, 321, 348
Lsp1109I GCAGC 1 cut(s) 367
LweI GCATC 3 cut(s) 329, 367, 388
MaeII ACGT 5 cut(s) 7, 187, 199, 235, 331
MaeIII GTNAC 2 cut(s) 3, 205
MalI GATC 3 cut(s) 45, 247, 277
MboI GATC 3 cut(s) 43, 245, 275
MboII GAAGA 2 cut(s) 35, 428
MflI RGATCY 1 cut(s) 275
MluCI AATT 4 cut(s) 48, 123, 356, 368
MlyI GAGTC 2 cut(s) 244, 415
MnlI CCTC 2 cut(s) 5, 430
MroI TCCGGA 1 cut(s) 211
MseI TTAA 4 cut(s) 69, 81, 359, 466
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 336
MvaI CCWGG 1 cut(s) 336
MvnI CGCG 1 cut(s) 243
MwoI GCNNNNNNNGC 2 cut(s) 227, 446
NdeII GATC 3 cut(s) 43, 245, 275
NlaIII CATG 2 cut(s) 76, 142
NlaIV GGNNCC 1 cut(s) 277
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 76
PciI ACATGT 1 cut(s) 72
PcsI WCGNNNNNNNCGW 1 cut(s) 337
PfeI GAWTC 1 cut(s) 148
PflMI CCANNNNNTGG 1 cut(s) 306
PkrI GCNGC 1 cut(s) 382
PleI GAGTC 2 cut(s) 244, 415
PpsI GAGTC 2 cut(s) 244, 415
Ppu21I YACGTR 1 cut(s) 200
PscI ACATGT 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 1 cut(s) 277
PstI CTGCAG 1 cut(s) 22
PsuI RGATCY 1 cut(s) 275
RsaI GTAC 2 cut(s) 16, 240
RsaNI GTAC 2 cut(s) 15, 239
SaqAI TTAA 4 cut(s) 69, 81, 359, 466
SatI GCNGC 1 cut(s) 381
Sau3AI GATC 3 cut(s) 43, 245, 275
SchI GAGTC 2 cut(s) 244, 415
ScrFI CCNGG 1 cut(s) 336
SetI ASST 8 cut(s) 10, 16, 190, 202, 238, 334, 340, 451
SfaNI GCATC 3 cut(s) 329, 367, 388
SfcI CTRYAG 1 cut(s) 18
Sse9I AATT 4 cut(s) 48, 123, 356, 368
SsiI CCGC 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 334
TaaI ACNGT 1 cut(s) 86
TaiI ACGT 5 cut(s) 10, 190, 202, 238, 334
TaqI TCGA 6 cut(s) 10, 61, 133, 248, 325, 340
TasI AATT 4 cut(s) 48, 123, 356, 368
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 4 cut(s) 69, 81, 359, 466
Tru9I TTAA 4 cut(s) 69, 81, 359, 466
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 380
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 155
TspGWI ACGGA 1 cut(s) 114
Van91I CCANNNNNTGG 1 cut(s) 306
XceI RCATGY 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.