ATCG01120

30S ribosomal protein S15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Pt
OG0020234
Physical Location & Seq
Reverse (-)
123296 .. 123562
267 bp
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UTR
Exon/CDS
Intron
ATCG01120.1

Sequence Viewer

Length: 267 bp
ATGATAAAAAATATAGTCATTTCATTTGAAGAACAAAAAGAAGAAAGCAGGGGATCCGTTGAATTTCAAGTATTTAGTTTCACTAATAAGATACGAAGACTTACTTCACATTTGGAATTGCACAGAAAAGATTATTTATCTCAGCGGGGTCTACGAAAAATTCTGGGAAAACGTCAACGACTGCTGGCTTATTTGTCAAAAAAAAATAGAGTACGTTATAAAGAATTAATTAATCAGTTGAATATTCGGGAATTAAAAACTCGTTAA

Protein Analysis

88

Amino Acids

10.72

Weight (kDa)

10.81

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S15 PF00312 8 - 83 8e-25 Ribosomal protein S15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020234)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG01120
malus_domestica MD08G1073600.v1.1 MD09G1289300.v1.1 MD12G1214000.v1.1 MD12G1237700.v1.1
rosa_chinensis RchiOBHm_Chr3g0470821

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 219
AccI GTMKAC 1 cut(s) 151
AciI CCGC 1 cut(s) 145
AclWI GGATC 2 cut(s) 48, 61
AcsI RAATTY 2 cut(s) 62, 159
AfaI GTAC 1 cut(s) 213
AgsI TTSAA 4 cut(s) 29, 62, 68, 241
AlwI GGATC 2 cut(s) 48, 61
ApoI RAATTY 2 cut(s) 62, 159
AseI ATTAAT 2 cut(s) 227, 231
BamHI GGATCC 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 103
BseMII CTCAG 1 cut(s) 155
Bsp143I GATC 1 cut(s) 53
BspACI CCGC 1 cut(s) 145
BspCNI CTCAG 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 2 cut(s) 48, 61
BssMI GATC 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 141
BstKTI GATC 1 cut(s) 56
BstMBI GATC 1 cut(s) 53
BstV2I GAAGAC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
Cac8I GCNNGC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 212
CviJI RGCY 1 cut(s) 188
CviKI_1 RGCY 1 cut(s) 188
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 1 cut(s) 141
DpnI GATC 1 cut(s) 55
DpnII GATC 1 cut(s) 53
FaiI YATR 2 cut(s) 14, 219
FalI AAGNNNNNCTT 2 cut(s) 88, 120
FauI CCCGC 1 cut(s) 138
FblI GTMKAC 1 cut(s) 151
HincII GTYRAC 1 cut(s) 176
HindII GTYRAC 1 cut(s) 176
Hpy166II GTNNAC 2 cut(s) 152, 176
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 2 cut(s) 152, 176
HpyCH4IV ACGT 2 cut(s) 172, 214
HpyCH4V TGCA 1 cut(s) 121
HpyF3I CTNAG 1 cut(s) 141
HpySE526I ACGT 2 cut(s) 172, 214
Kzo9I GATC 1 cut(s) 53
LpnPI CCDG 3 cut(s) 34, 149, 170
MaeII ACGT 2 cut(s) 172, 214
MalI GATC 1 cut(s) 55
MboI GATC 1 cut(s) 53
MboII GAAGA 3 cut(s) 41, 53, 108
MflI RGATCY 1 cut(s) 53
MluCI AATT 6 cut(s) 62, 116, 159, 224, 228, 251
MseI TTAA 4 cut(s) 227, 231, 254, 265
MspA1I CMGCKG 1 cut(s) 145
NdeII GATC 1 cut(s) 53
NlaIV GGNNCC 1 cut(s) 55
PacI TTAATTAA 1 cut(s) 231
PshBI ATTAAT 2 cut(s) 227, 231
PsiI TTATAA 1 cut(s) 219
PspN4I GGNNCC 1 cut(s) 55
PsuI RGATCY 1 cut(s) 53
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
SaqAI TTAA 4 cut(s) 227, 231, 254, 265
Sau3AI GATC 1 cut(s) 53
SetI ASST 2 cut(s) 175, 217
SgeI CNNG 6 cut(s) 61, 80, 158, 176, 197, 260
Sse9I AATT 6 cut(s) 62, 116, 159, 224, 228, 251
SsiI CCGC 1 cut(s) 145
SspI AATATT 1 cut(s) 244
TaiI ACGT 2 cut(s) 175, 217
TasI AATT 6 cut(s) 62, 116, 159, 224, 228, 251
Tru1I TTAA 4 cut(s) 227, 231, 254, 265
Tru9I TTAA 4 cut(s) 227, 231, 254, 265
TspDTI ATGAA 1 cut(s) 12
TspGWI ACGGA 1 cut(s) 46
VspI ATTAAT 2 cut(s) 227, 231
XapI RAATTY 2 cut(s) 62, 159
XmiI GTMKAC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.