ATMG00110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
OG0018760
Physical Location & Seq
Forward (+)
30463 .. 31083
621 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG00110.1

Sequence Viewer

Length: 621 bp
ATGAGACGACTTTTTCTTGAACTATATCATAAACTGATCTTCTCCTCCACACCAATCACGAGTTTTTCTTCATTCCTCTCGTATATCGTCGTAACGCCCTTAATGCTAGGTTTTGAAAAAGACTTTTCATGTCATTCCCATTTAGGTCCGATTCGGATCCCTCCGTTGTTTCCTTTTCCTCCTGCACCTTTTCCTCGAAATGAGAAAGAAGATGGTACACTCGAATTGTATTATTTAAGTACTTATTGCTTGCCAAAGATCCTACTTCTACAATTGGTGGGTCACCGGGTTATTCAAATAAGTCGTGTTTTCTGTGGTTTTCCCATGTTACAACTTTCGTACCAATTCGGTCGATCCGGAATGGATCGGTTAAACATTCCATTAGGGAGCCTGGTCTTGACTCTTCTGTGTGGTATTCATTCTCGTTCGGCTCTTGGAATCACATCCAGCAGTGGTTGGAACAGCTCGCAAAATCCAACCACTTCACCTACTTTATTGCCCCTAACCGTTTCTCGTACCTCTATTGAAACAGAATGGTTTCATGTTCTTTCATCGATTGGTTATTCCTCTCTGTTCGTATCTCTTTTTCCAATTTCGGTCTCGATTAGTTTACAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016021 GO:0031224 GO:0032991 GO:0043190 GO:0044425 GO:0044459 GO:0044464 GO:0071944 GO:0098533 GO:0098796 GO:0098797 GO:1902494 GO:1902495 GO:1904949 GO:1990351
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

23.08

Weight (kDa)

8.75

Isoelectric Point (pI)

56.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018760)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00110
pyrus_communis pycom12401g00250
rosa_chinensis RchiOBHm_MTg0498291
rosa_laevigata RLG00000000353 RLG00000000380 RLG00000000396
rosa_roxburghii Rroxscaffold_2G00119410
rosa_samantha Rh1BG019600
rosa_wichuraiana Rw0G023290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 356
AclWI GGATC 5 cut(s) 151, 164, 253, 348, 372
AfaI GTAC 4 cut(s) 217, 241, 341, 517
AgsI TTSAA 4 cut(s) 20, 116, 296, 527
AjnI CCWGG 1 cut(s) 390
AluBI AGCT 1 cut(s) 465
AluI AGCT 1 cut(s) 465
Alw26I GTCTC 1 cut(s) 604
AlwI GGATC 5 cut(s) 151, 164, 253, 348, 372
Aor13HI TCCGGA 1 cut(s) 356
Asp700I GAANNNNTTC 1 cut(s) 537
AspS9I GGNCC 1 cut(s) 146
AsuC2I CCSGG 1 cut(s) 287
AsuHPI GGTGA 2 cut(s) 275, 477
AvaII GGWCC 1 cut(s) 146
BaeI ACNNNNGTAYC 2 cut(s) 323, 356
BamHI GGATCC 1 cut(s) 156
BauI CACGAG 1 cut(s) 58
BccI CCATC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 392
BcnI CCSGG 1 cut(s) 287
BcoDI GTCTC 1 cut(s) 604
BfaI CTAG 1 cut(s) 107
BmcAI AGTACT 1 cut(s) 241
Bme1390I CCNGG 2 cut(s) 287, 392
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 2 cut(s) 158, 389
BmrFI CCNGG 2 cut(s) 287, 392
BpuMI CCSGG 1 cut(s) 287
Bsa29I ATCGAT 1 cut(s) 554
BsaBI GATNNNNATC 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 604
BsaWI WCCGGW 1 cut(s) 356
Bse8I GATNNNNATC 1 cut(s) 155
BseAI TCCGGA 1 cut(s) 356
BseBI CCWGG 1 cut(s) 392
BseCI ATCGAT 1 cut(s) 554
BseGI GGATG 1 cut(s) 443
BseJI GATNNNNATC 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 34
BsgI GTGCAG 1 cut(s) 168
Bsh1285I CGRYCG 1 cut(s) 352
BshVI ATCGAT 1 cut(s) 554
BsiEI CGRYCG 1 cut(s) 352
BsiSI CCGG 2 cut(s) 286, 357
BsmAI GTCTC 1 cut(s) 604
Bso31I GGTCTC 1 cut(s) 604
Bsp13I TCCGGA 1 cut(s) 356
Bsp143I GATC 5 cut(s) 36, 156, 258, 353, 364
BspDI ATCGAT 1 cut(s) 554
BspEI TCCGGA 1 cut(s) 356
BspLI GGNNCC 2 cut(s) 158, 389
BspPI GGATC 5 cut(s) 151, 164, 253, 348, 372
BspTNI GGTCTC 1 cut(s) 604
BssMI GATC 5 cut(s) 36, 156, 258, 353, 364
BssSI CACGAG 1 cut(s) 58
Bst2BI CACGAG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 392
Bst4CI ACNGT 1 cut(s) 508
Bst6I CTCTTC 1 cut(s) 408
BstC8I GCNNGC 2 cut(s) 251, 467
BstEII GGTNACC 1 cut(s) 281
BstF5I GGATG 1 cut(s) 443
BstKTI GATC 5 cut(s) 39, 159, 261, 356, 367
BstMAI GTCTC 1 cut(s) 604
BstMBI GATC 5 cut(s) 36, 156, 258, 353, 364
BstMCI CGRYCG 1 cut(s) 352
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNI CCWGG 1 cut(s) 392
BstPI GGTNACC 1 cut(s) 281
BstSCI CCNGG 2 cut(s) 285, 390
BstX2I RGATCY 2 cut(s) 156, 258
BstYI RGATCY 2 cut(s) 156, 258
Bsu15I ATCGAT 1 cut(s) 554
BsuTUI ATCGAT 1 cut(s) 554
BtsCI GGATG 1 cut(s) 443
BtsI GCAGTG 1 cut(s) 457
BtsIMutI CAGTG 1 cut(s) 457
Cac8I GCNNGC 2 cut(s) 251, 467
Cfr13I GGNCC 1 cut(s) 146
ClaI ATCGAT 1 cut(s) 554
Csp6I GTAC 4 cut(s) 216, 240, 340, 516
CviAII CATG 3 cut(s) 129, 325, 542
CviJI RGCY 3 cut(s) 390, 431, 465
CviKI_1 RGCY 3 cut(s) 390, 431, 465
CviQI GTAC 4 cut(s) 216, 240, 340, 516
DpnI GATC 5 cut(s) 38, 158, 260, 355, 366
DpnII GATC 5 cut(s) 36, 156, 258, 353, 364
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
Eco31I GGTCTC 1 cut(s) 604
Eco47I GGWCC 1 cut(s) 146
Eco91I GGTNACC 1 cut(s) 281
EcoO65I GGTNACC 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 390
FaeI CATG 3 cut(s) 132, 328, 545
FaiI YATR 6 cut(s) 25, 30, 84, 130, 326, 543
FatI CATG 3 cut(s) 128, 324, 541
FokI GGATG 1 cut(s) 430
FspBI CTAG 1 cut(s) 107
HapII CCGG 2 cut(s) 286, 357
Hin1II CATG 3 cut(s) 132, 328, 545
HinfI GANTC 3 cut(s) 151, 400, 438
HpaII CCGG 2 cut(s) 286, 357
HphI GGTGA 2 cut(s) 275, 477
Hpy166II GTNNAC 2 cut(s) 218, 611
Hpy188I TCNGA 2 cut(s) 150, 156
Hpy188III TCNNGA 5 cut(s) 17, 58, 357, 397, 601
Hpy8I GTNNAC 2 cut(s) 218, 611
Hpy99I CGWCG 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 508
HpyCH4V TGCA 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
Hsp92II CATG 3 cut(s) 132, 328, 545
Kpn2I TCCGGA 1 cut(s) 356
Kzo9I GATC 5 cut(s) 36, 156, 258, 353, 364
LmnI GCTCC 1 cut(s) 387
LpnPI CCDG 6 cut(s) 195, 299, 370, 377, 404, 460
MaeI CTAG 1 cut(s) 107
MaeIII GTNAC 3 cut(s) 91, 281, 327
MalI GATC 5 cut(s) 38, 158, 260, 355, 366
MboI GATC 5 cut(s) 36, 156, 258, 353, 364
MboII GAAGA 4 cut(s) 31, 60, 221, 395
MfeI CAATTG 1 cut(s) 272
MflI RGATCY 2 cut(s) 156, 258
MluCI AATT 4 cut(s) 224, 272, 344, 591
MlyI GAGTC 1 cut(s) 394
MmeI TCCRAC 2 cut(s) 437, 500
MnlI CCTC 7 cut(s) 55, 86, 171, 189, 204, 529, 577
MroI TCCGGA 1 cut(s) 356
MroXI GAANNNNTTC 1 cut(s) 537
MseI TTAA 4 cut(s) 101, 236, 371, 619
MspI CCGG 2 cut(s) 286, 357
MspR9I CCNGG 2 cut(s) 287, 392
MunI CAATTG 1 cut(s) 272
MvaI CCWGG 1 cut(s) 392
MwoI GCNNNNNNNGC 1 cut(s) 103
NciI CCSGG 1 cut(s) 287
NdeII GATC 5 cut(s) 36, 156, 258, 353, 364
NlaIII CATG 3 cut(s) 132, 328, 545
NlaIV GGNNCC 2 cut(s) 158, 389
NmuCI GTSAC 1 cut(s) 281
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 2 cut(s) 151, 438
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
Psp6I CCWGG 1 cut(s) 390
PspEI GGTNACC 1 cut(s) 281
PspGI CCWGG 1 cut(s) 390
PspN4I GGNNCC 2 cut(s) 158, 389
PspPI GGNCC 1 cut(s) 146
PsuI RGATCY 2 cut(s) 156, 258
RsaI GTAC 4 cut(s) 217, 241, 341, 517
RsaNI GTAC 4 cut(s) 216, 240, 340, 516
SaqAI TTAA 4 cut(s) 101, 236, 371, 619
Sau3AI GATC 5 cut(s) 36, 156, 258, 353, 364
Sau96I GGNCC 1 cut(s) 146
ScaI AGTACT 1 cut(s) 241
SchI GAGTC 1 cut(s) 394
ScrFI CCNGG 2 cut(s) 287, 392
SetI ASST 6 cut(s) 112, 148, 190, 467, 490, 521
SinI GGWCC 1 cut(s) 146
Sse9I AATT 4 cut(s) 224, 272, 344, 591
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 2 cut(s) 285, 390
TaaI ACNGT 1 cut(s) 508
TaqI TCGA 5 cut(s) 196, 222, 352, 554, 602
TaqII GACCGA 2 cut(s) 338, 586
TasI AATT 4 cut(s) 224, 272, 344, 591
TatI WGTACW 1 cut(s) 239
TfiI GAWTC 2 cut(s) 151, 438
Tru1I TTAA 4 cut(s) 101, 236, 371, 619
Tru9I TTAA 4 cut(s) 101, 236, 371, 619
TscAI CASTG 1 cut(s) 457
TseFI GTSAC 1 cut(s) 281
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 5 cut(s) 60, 117, 407, 530, 540
TspGWI ACGGA 1 cut(s) 153
TspRI CASTG 1 cut(s) 457
VpaK11BI GGWCC 1 cut(s) 146
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 1 cut(s) 107
ZrmI AGTACT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.