RLG00000000396

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0018760
Physical Location & Seq
Reverse (-)
812357 .. 813328
972 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000396

Sequence Viewer

Length: 534 bp
ATGGATCGGTTAAACATTCTATTAGGGAGCCCGGTCTTGACTCTTCTATGTGGTATTCATTCTCGTTCGGCTCTTGGAATCACATCCAGCAGTGGTTGGAACAGCTCGCAAAATCCAACCACTTTACCTACTTCATTGCCCCCAACCGTTTCTCTTTACAAGATTGAATGGCCTCCGGACCCTCGATTCGATTGTTTTCCAAGAATGCTGCTGAGCCGGCATGCTCCTCGCTGCCCTATGGGGGGCAAGACTCTCTTTCTCAAAGGCTCTGTTCATGCGAACCCCAAAGAGTCACTTGTTTTCCACTATCTCTCATCTGGCATCTCGGTAAGAGGCTTTATCCGGGTTCAATTCCTTGATTCCGGATTAATTCCTTCGATGCGAGCGGGGTATATCGAGAGACTCACCCACCGAGGACCGCCGTTGGCGCCTTTATGTCTCCATCTCTCGAGTCGAGCTCAATCTCTGACAGGTATTGTTTGGTCGGTGCGGATGATGAACCCCCGTTTGAAGATGAGTGGATCGGGAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016021 GO:0031224 GO:0032991 GO:0043190 GO:0044425 GO:0044459 GO:0044464 GO:0071944 GO:0098533 GO:0098796 GO:0098797 GO:1902494 GO:1902495 GO:1904949 GO:1990351
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

19.42

Weight (kDa)

10.64

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018760)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00110
pyrus_communis pycom12401g00250
rosa_chinensis RchiOBHm_MTg0498291
rosa_laevigata RLG00000000353 RLG00000000380 RLG00000000396
rosa_roxburghii Rroxscaffold_2G00119410
rosa_samantha Rh1BG019600
rosa_wichuraiana Rw0G023290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 427
AccBSI CCGCTC 1 cut(s) 386
AccIII TCCGGA 2 cut(s) 175, 362
AciI CCGC 3 cut(s) 386, 419, 490
AclWI GGATC 2 cut(s) 12, 529
AcyI GRCGYC 1 cut(s) 428
AfiI CCNNNNNNNGG 2 cut(s) 241, 242
AgsI TTSAA 3 cut(s) 167, 350, 511
AluBI AGCT 2 cut(s) 105, 458
AluI AGCT 2 cut(s) 105, 458
Alw21I GWGCWC 1 cut(s) 460
Alw26I GTCTC 2 cut(s) 394, 443
AlwI GGATC 2 cut(s) 12, 529
Ama87I CYCGRG 1 cut(s) 448
Aor13HI TCCGGA 2 cut(s) 175, 362
AoxI GGCC 1 cut(s) 170
ApeKI GCWGC 2 cut(s) 208, 231
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AseI ATTAAT 1 cut(s) 368
AspLEI GCGC 1 cut(s) 430
AspS9I GGNCC 2 cut(s) 178, 416
AsuC2I CCSGG 2 cut(s) 32, 344
AsuHPI GGTGA 1 cut(s) 397
AvaI CYCGRG 1 cut(s) 448
AvaII GGWCC 2 cut(s) 178, 416
BanI GGYRCC 1 cut(s) 427
BanII GRGCYC 2 cut(s) 32, 460
Bbv12I GWGCWC 1 cut(s) 460
BbvI GCAGC 2 cut(s) 195, 218
BccI CCATC 1 cut(s) 450
BceAI ACGGC 1 cut(s) 406
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BcnI CCSGG 2 cut(s) 32, 344
BcoDI GTCTC 2 cut(s) 394, 443
BfoI RGCGCY 1 cut(s) 431
BisI GCNGC 2 cut(s) 209, 232
BlpI GCTNAGC 1 cut(s) 212
BlsI GCNGC 2 cut(s) 210, 233
Bme1390I CCNGG 2 cut(s) 32, 344
Bme18I GGWCC 2 cut(s) 178, 416
BmeT110I CYCGRG 1 cut(s) 448
BmgT120I GGNCC 2 cut(s) 178, 416
BmiI GGNNCC 3 cut(s) 29, 180, 429
BmrFI CCNGG 2 cut(s) 32, 344
BmsI GCATC 2 cut(s) 330, 369
BplI GAGNNNNNCTC 2 cut(s) 442, 474
Bpu1102I GCTNAGC 1 cut(s) 212
BpuMI CCSGG 2 cut(s) 32, 344
BsaHI GRCGYC 1 cut(s) 428
BsaJI CCNNGG 1 cut(s) 412
BsaWI WCCGGW 2 cut(s) 175, 362
Bsc4I CCNNNNNNNGG 2 cut(s) 241, 242
Bse118I RCCGGY 1 cut(s) 216
Bse3DI GCAATG 1 cut(s) 134
BseAI TCCGGA 2 cut(s) 175, 362
BseDI CCNNGG 1 cut(s) 412
BseGI GGATG 2 cut(s) 83, 498
BseLI CCNNNNNNNGG 2 cut(s) 241, 242
BseMI GCAATG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 203
BseRI GAGGAG 1 cut(s) 216
BseXI GCAGC 2 cut(s) 195, 218
BshFI GGCC 1 cut(s) 172
BshNI GGYRCC 1 cut(s) 427
BsiHKAI GWGCWC 1 cut(s) 460
BsiHKCI CYCGRG 1 cut(s) 448
BsiSI CCGG 5 cut(s) 32, 176, 217, 343, 363
BslI CCNNNNNNNGG 2 cut(s) 241, 242
BsmAI GTCTC 2 cut(s) 394, 443
BsmI GAATGC 1 cut(s) 210
BsnI GGCC 1 cut(s) 172
BsoBI CYCGRG 1 cut(s) 448
Bsp1286I GDGCHC 2 cut(s) 32, 460
Bsp13I TCCGGA 2 cut(s) 175, 362
Bsp143I GATC 2 cut(s) 4, 521
Bsp1720I GCTNAGC 1 cut(s) 212
BspACI CCGC 3 cut(s) 386, 419, 490
BspANI GGCC 1 cut(s) 172
BspCNI CTCAG 1 cut(s) 204
BspEI TCCGGA 2 cut(s) 175, 362
BspLI GGNNCC 3 cut(s) 29, 180, 429
BspPI GGATC 2 cut(s) 12, 529
BspT107I GGYRCC 1 cut(s) 427
BsrBI CCGCTC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 216
BssAI RCCGGY 1 cut(s) 216
BssECI CCNNGG 1 cut(s) 412
BssMI GATC 2 cut(s) 4, 521
BssNI GRCGYC 1 cut(s) 428
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 48
BstACI GRCGYC 1 cut(s) 428
BstC8I GCNNGC 4 cut(s) 107, 218, 222, 384
BstDEI CTNAG 1 cut(s) 212
BstF5I GGATG 2 cut(s) 83, 498
BstH2I RGCGCY 1 cut(s) 431
BstHHI GCGC 1 cut(s) 430
BstKTI GATC 2 cut(s) 7, 524
BstMAI GTCTC 2 cut(s) 394, 443
BstMBI GATC 2 cut(s) 4, 521
BstMWI GCNNNNNNNGC 2 cut(s) 217, 427
BstNSI RCATGY 1 cut(s) 224
BstSCI CCNGG 2 cut(s) 30, 342
BstV1I GCAGC 2 cut(s) 195, 218
BsuRI GGCC 1 cut(s) 172
BtsCI GGATG 2 cut(s) 83, 498
BtsI GCAGTG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 97
Cac8I GCNNGC 4 cut(s) 107, 218, 222, 384
CfoI GCGC 1 cut(s) 430
Cfr10I RCCGGY 1 cut(s) 216
Cfr13I GGNCC 2 cut(s) 178, 416
CviAII CATG 2 cut(s) 221, 275
CviJI RGCY 8 cut(s) 30, 71, 105, 172, 216, 267, 336, 458
CviKI_1 RGCY 8 cut(s) 30, 71, 105, 172, 216, 267, 336, 458
DdeI CTNAG 1 cut(s) 212
DinI GGCGCC 1 cut(s) 429
DpnI GATC 2 cut(s) 6, 523
DpnII GATC 2 cut(s) 4, 521
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Ecl136II GAGCTC 1 cut(s) 458
Eco24I GRGCYC 2 cut(s) 32, 460
Eco47I GGWCC 2 cut(s) 178, 416
Eco53kI GAGCTC 1 cut(s) 458
Eco88I CYCGRG 1 cut(s) 448
EcoICRI GAGCTC 1 cut(s) 458
EcoT38I GRGCYC 2 cut(s) 32, 460
EgeI GGCGCC 1 cut(s) 429
EheI GGCGCC 1 cut(s) 429
FaeI CATG 2 cut(s) 224, 278
FaiI YATR 6 cut(s) 49, 222, 239, 276, 393, 436
FalI AAGNNNNNCTT 4 cut(s) 239, 271, 279, 311
FatI CATG 2 cut(s) 220, 274
FauI CCCGC 1 cut(s) 379
Fnu4HI GCNGC 2 cut(s) 209, 232
FokI GGATG 2 cut(s) 70, 505
FriOI GRGCYC 2 cut(s) 32, 460
Fsp4HI GCNGC 2 cut(s) 209, 232
GlaI GCGC 1 cut(s) 429
GluI GCNGC 2 cut(s) 209, 232
HaeII RGCGCY 1 cut(s) 431
HaeIII GGCC 1 cut(s) 172
HapII CCGG 5 cut(s) 32, 176, 217, 343, 363
HhaI GCGC 1 cut(s) 430
Hin1I GRCGYC 1 cut(s) 428
Hin1II CATG 2 cut(s) 224, 278
Hin6I GCGC 1 cut(s) 428
HinP1I GCGC 1 cut(s) 428
HinfI GANTC 9 cut(s) 40, 78, 186, 250, 290, 359, 402, 451, 528
HpaII CCGG 5 cut(s) 32, 176, 217, 343, 363
HphI GGTGA 1 cut(s) 397
Hpy188I TCNGA 1 cut(s) 468
Hpy188III TCNNGA 6 cut(s) 37, 176, 363, 397, 448, 525
HpyAV CCTTC 1 cut(s) 384
HpyCH4III ACNGT 1 cut(s) 148
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 427
HpyF3I CTNAG 1 cut(s) 212
Hsp92I GRCGYC 1 cut(s) 428
Hsp92II CATG 2 cut(s) 224, 278
HspAI GCGC 1 cut(s) 428
KasI GGCGCC 1 cut(s) 427
Kpn2I TCCGGA 2 cut(s) 175, 362
KroI GCCGGC 1 cut(s) 216
KroNI GCCGGC 1 cut(s) 218
Kzo9I GATC 2 cut(s) 4, 521
LmnI GCTCC 2 cut(s) 27, 229
LpnPI CCDG 8 cut(s) 45, 100, 189, 230, 303, 356, 376, 456
Lsp1109I GCAGC 2 cut(s) 195, 218
LweI GCATC 2 cut(s) 330, 369
MaeIII GTNAC 1 cut(s) 291
MalI GATC 2 cut(s) 6, 523
MbiI CCGCTC 1 cut(s) 386
MboI GATC 2 cut(s) 4, 521
MboII GAAGA 2 cut(s) 35, 523
MhlI GDGCHC 2 cut(s) 32, 460
MluCI AATT 2 cut(s) 350, 369
Mly113I GGCGCC 1 cut(s) 428
MlyI GAGTC 5 cut(s) 34, 244, 299, 396, 460
MmeI TCCRAC 2 cut(s) 77, 140
MnlI CCTC 5 cut(s) 183, 192, 237, 326, 407
MroI TCCGGA 2 cut(s) 175, 362
MroNI GCCGGC 1 cut(s) 216
MseI TTAA 2 cut(s) 11, 368
MspI CCGG 5 cut(s) 32, 176, 217, 343, 363
MspR9I CCNGG 2 cut(s) 32, 344
Mva1269I GAATGC 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 217, 427
NaeI GCCGGC 1 cut(s) 218
NarI GGCGCC 1 cut(s) 428
NciI CCSGG 2 cut(s) 32, 344
NdeII GATC 2 cut(s) 4, 521
NgoMIV GCCGGC 1 cut(s) 216
NlaIII CATG 2 cut(s) 224, 278
NlaIV GGNNCC 3 cut(s) 29, 180, 429
NmuCI GTSAC 1 cut(s) 291
NspI RCATGY 1 cut(s) 224
PaeI GCATGC 1 cut(s) 224
PaeR7I CTCGAG 1 cut(s) 448
PctI GAATGC 1 cut(s) 210
PdiI GCCGGC 1 cut(s) 218
PfeI GAWTC 4 cut(s) 78, 186, 359, 528
PkrI GCNGC 2 cut(s) 210, 233
PleI GAGTC 5 cut(s) 34, 244, 298, 396, 459
PluTI GGCGCC 1 cut(s) 431
PpsI GAGTC 5 cut(s) 34, 244, 298, 396, 459
PshBI ATTAAT 1 cut(s) 368
Psp124BI GAGCTC 1 cut(s) 460
PspN4I GGNNCC 3 cut(s) 29, 180, 429
PspPI GGNCC 2 cut(s) 178, 416
SacI GAGCTC 1 cut(s) 460
SaqAI TTAA 2 cut(s) 11, 368
SatI GCNGC 2 cut(s) 209, 232
Sau3AI GATC 2 cut(s) 4, 521
Sau96I GGNCC 2 cut(s) 178, 416
SchI GAGTC 5 cut(s) 34, 244, 299, 396, 460
ScrFI CCNGG 2 cut(s) 32, 344
SduI GDGCHC 2 cut(s) 32, 460
SetI ASST 4 cut(s) 107, 130, 460, 475
SfaNI GCATC 2 cut(s) 330, 369
SfoI GGCGCC 1 cut(s) 429
Sfr274I CTCGAG 1 cut(s) 448
SinI GGWCC 2 cut(s) 178, 416
SlaI CTCGAG 1 cut(s) 448
SmlI CTYRAG 1 cut(s) 448
SmoI CTYRAG 1 cut(s) 448
SphI GCATGC 1 cut(s) 224
Sse9I AATT 2 cut(s) 350, 369
SsiI CCGC 3 cut(s) 386, 419, 490
SspDI GGCGCC 1 cut(s) 427
SstI GAGCTC 1 cut(s) 460
StyD4I CCNGG 2 cut(s) 30, 342
TaaI ACNGT 1 cut(s) 148
TaqI TCGA 6 cut(s) 184, 189, 377, 396, 449, 454
TasI AATT 2 cut(s) 350, 369
TfiI GAWTC 4 cut(s) 78, 186, 359, 528
Tru1I TTAA 2 cut(s) 11, 368
Tru9I TTAA 2 cut(s) 11, 368
TscAI CASTG 1 cut(s) 97
TseFI GTSAC 1 cut(s) 291
TseI GCWGC 2 cut(s) 208, 231
Tsp45I GTSAC 1 cut(s) 291
TspDTI ATGAA 4 cut(s) 47, 123, 263, 512
TspRI CASTG 1 cut(s) 97
VpaK11BI GGWCC 2 cut(s) 178, 416
VspI ATTAAT 1 cut(s) 368
XceI RCATGY 1 cut(s) 224
XhoI CTCGAG 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.