RLG00000000353

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0018760
Physical Location & Seq
Forward (+)
690173 .. 691828
1656 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000353

Sequence Viewer

Length: 924 bp
ATGAATTCGAAAGAACGAAGAAGTAAGGAAATGAGACGACTCTTTCTTGAACTATATCATAAACAGATCTTCCCCTCCACACCAATCACGAGTTTTTCTCCATTCCTCTCGTATATCGTCGTAACGCCCTTAATGCTAGGTTTTGAAAAAGACTTTTCATGTCATTCCCATTTAGGTCCGATTCGGATCCCTCCGTTGTTTCCTTTTCCTCCCGCACCTTTTTCTCGAAATGAGAAAGAAGATGGTACACTCGAATTGTATTATTTAAGTGCTTATTGCTTGCCAAAGATCCTACTTCTACAATTGGTAGGTCACCGGGTTATTCAAATAAGTTGTGTTTTCTGTGGTTTTCCCATGTTACAACTTCTGTACCAATTCAGTCAATCCGGAATGGATCGGTTAAACATTCTATTAGGGAGCCCGGTCTTGACTCTTCTATGTGGTATTCATTCTCGTTCGGCTCTTGGAATCACATCCAGCAGTGGTTGGAACAGCTCGCAAAATCCAACCACTTTACCTACTTCATTGCCCCCAACCGTTTCTCTTTACAAGATTGAATGGCCTCCGGACCCTCGATTCGATTGTTTTCCAAGAATGCTGCTGAGCCGGCATGCTCCTCGCTGCCCTATGGGGGGCAAGACTCTCTTTCTCAAAGGCTCTGTTCATGCGAACCCCAAAGAGTCACTTGTTTTCCACTATCTCTCATCTGGCATCTCGGTAAGAGGCTTTATCCGGGTTCAATTCCTTGATTCCGGATTAATTCCTTCGATGCGAGCGGGGTATATCGAGAGACTCACCCACCGAGGACCGCCGTTGGCGCCTTTATGTCTCCATCTCTCGAGTCGAGCTCAATCTCTGACAGGTATTGTTTGGTCGGTGCGGATGATGAACCCCCGTTTGAAGATGAGTGGATCGGGAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016021 GO:0031224 GO:0032991 GO:0043190 GO:0044425 GO:0044459 GO:0044464 GO:0071944 GO:0098533 GO:0098796 GO:0098797 GO:1902494 GO:1902495 GO:1904949 GO:1990351
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

308

Amino Acids

34.48

Weight (kDa)

9.82

Isoelectric Point (pI)

57.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018760)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00110
pyrus_communis pycom12401g00250
rosa_chinensis RchiOBHm_MTg0498291
rosa_laevigata RLG00000000353 RLG00000000380 RLG00000000396
rosa_roxburghii Rroxscaffold_2G00119410
rosa_samantha Rh1BG019600
rosa_wichuraiana Rw0G023290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 817
AccBSI CCGCTC 1 cut(s) 776
AccIII TCCGGA 3 cut(s) 386, 565, 752
AciI CCGC 4 cut(s) 213, 776, 809, 880
AclWI GGATC 5 cut(s) 181, 194, 283, 402, 919
AcsI RAATTY 1 cut(s) 4
AcyI GRCGYC 1 cut(s) 818
AfaI GTAC 2 cut(s) 247, 371
AfiI CCNNNNNNNGG 2 cut(s) 631, 632
AgsI TTSAA 6 cut(s) 50, 146, 326, 557, 740, 901
AluBI AGCT 2 cut(s) 495, 848
AluI AGCT 2 cut(s) 495, 848
Alw21I GWGCWC 1 cut(s) 850
Alw26I GTCTC 3 cut(s) 28, 784, 833
AlwI GGATC 5 cut(s) 181, 194, 283, 402, 919
Ama87I CYCGRG 1 cut(s) 838
Aor13HI TCCGGA 3 cut(s) 386, 565, 752
AoxI GGCC 1 cut(s) 560
ApeKI GCWGC 2 cut(s) 598, 621
ApoI RAATTY 1 cut(s) 4
ArsI GACNNNNNNTTYG 2 cut(s) 560, 592
AseI ATTAAT 1 cut(s) 758
AspLEI GCGC 1 cut(s) 820
AspS9I GGNCC 3 cut(s) 176, 568, 806
AsuC2I CCSGG 3 cut(s) 317, 422, 734
AsuHPI GGTGA 2 cut(s) 305, 787
AsuII TTCGAA 1 cut(s) 8
AvaI CYCGRG 1 cut(s) 838
AvaII GGWCC 3 cut(s) 176, 568, 806
BaeI ACNNNNGTAYC 2 cut(s) 353, 386
BamHI GGATCC 1 cut(s) 186
BanI GGYRCC 1 cut(s) 817
BanII GRGCYC 2 cut(s) 422, 850
BauI CACGAG 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 850
BbvI GCAGC 2 cut(s) 585, 608
BccI CCATC 2 cut(s) 236, 840
BceAI ACGGC 1 cut(s) 796
BcgI CGANNNNNNTGC 2 cut(s) 599, 633
BcnI CCSGG 3 cut(s) 317, 422, 734
BcoDI GTCTC 3 cut(s) 28, 784, 833
BfaI CTAG 1 cut(s) 137
BfoI RGCGCY 1 cut(s) 821
BglII AGATCT 1 cut(s) 66
BisI GCNGC 2 cut(s) 599, 622
BlpI GCTNAGC 1 cut(s) 602
BlsI GCNGC 2 cut(s) 600, 623
Bme1390I CCNGG 3 cut(s) 317, 422, 734
Bme18I GGWCC 3 cut(s) 176, 568, 806
BmeT110I CYCGRG 1 cut(s) 838
BmgT120I GGNCC 3 cut(s) 176, 568, 806
BmiI GGNNCC 4 cut(s) 188, 419, 570, 819
BmrFI CCNGG 3 cut(s) 317, 422, 734
BmsI GCATC 2 cut(s) 720, 759
BplI GAGNNNNNCTC 4 cut(s) 82, 114, 832, 864
Bpu1102I GCTNAGC 1 cut(s) 602
Bpu14I TTCGAA 1 cut(s) 8
BpuMI CCSGG 3 cut(s) 317, 422, 734
BsaBI GATNNNNATC 1 cut(s) 185
BsaHI GRCGYC 1 cut(s) 818
BsaJI CCNNGG 1 cut(s) 802
BsaWI WCCGGW 3 cut(s) 386, 565, 752
Bsc4I CCNNNNNNNGG 2 cut(s) 631, 632
Bse118I RCCGGY 1 cut(s) 606
Bse3DI GCAATG 1 cut(s) 524
Bse8I GATNNNNATC 1 cut(s) 185
BseAI TCCGGA 3 cut(s) 386, 565, 752
BseDI CCNNGG 1 cut(s) 802
BseGI GGATG 2 cut(s) 473, 888
BseJI GATNNNNATC 1 cut(s) 185
BseLI CCNNNNNNNGG 2 cut(s) 631, 632
BseMI GCAATG 1 cut(s) 524
BseMII CTCAG 1 cut(s) 593
BseRI GAGGAG 1 cut(s) 606
BseXI GCAGC 2 cut(s) 585, 608
BshFI GGCC 1 cut(s) 562
BshNI GGYRCC 1 cut(s) 817
BsiHKAI GWGCWC 1 cut(s) 850
BsiHKCI CYCGRG 1 cut(s) 838
BsiSI CCGG 7 cut(s) 316, 387, 422, 566, 607, 733, 753
BslI CCNNNNNNNGG 2 cut(s) 631, 632
BsmAI GTCTC 3 cut(s) 28, 784, 833
BsmBI CGTCTC 1 cut(s) 28
BsmI GAATGC 1 cut(s) 600
BsnI GGCC 1 cut(s) 562
BsoBI CYCGRG 1 cut(s) 838
Bsp119I TTCGAA 1 cut(s) 8
Bsp1286I GDGCHC 2 cut(s) 422, 850
Bsp13I TCCGGA 3 cut(s) 386, 565, 752
Bsp143I GATC 5 cut(s) 66, 186, 288, 394, 911
Bsp1720I GCTNAGC 1 cut(s) 602
BspACI CCGC 4 cut(s) 213, 776, 809, 880
BspANI GGCC 1 cut(s) 562
BspCNI CTCAG 1 cut(s) 594
BspEI TCCGGA 3 cut(s) 386, 565, 752
BspLI GGNNCC 4 cut(s) 188, 419, 570, 819
BspPI GGATC 5 cut(s) 181, 194, 283, 402, 919
BspT104I TTCGAA 1 cut(s) 8
BspT107I GGYRCC 1 cut(s) 817
BsrBI CCGCTC 1 cut(s) 776
BsrDI GCAATG 1 cut(s) 524
BsrFI RCCGGY 1 cut(s) 606
BssAI RCCGGY 1 cut(s) 606
BssECI CCNNGG 1 cut(s) 802
BssMI GATC 5 cut(s) 66, 186, 288, 394, 911
BssNI GRCGYC 1 cut(s) 818
BssSI CACGAG 1 cut(s) 88
Bst2BI CACGAG 1 cut(s) 88
Bst4CI ACNGT 1 cut(s) 538
Bst6I CTCTTC 1 cut(s) 438
BstACI GRCGYC 1 cut(s) 818
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 5 cut(s) 281, 497, 608, 612, 774
BstDEI CTNAG 1 cut(s) 602
BstEII GGTNACC 1 cut(s) 311
BstF5I GGATG 2 cut(s) 473, 888
BstH2I RGCGCY 1 cut(s) 821
BstHHI GCGC 1 cut(s) 820
BstKTI GATC 5 cut(s) 69, 189, 291, 397, 914
BstMAI GTCTC 3 cut(s) 28, 784, 833
BstMBI GATC 5 cut(s) 66, 186, 288, 394, 911
BstMWI GCNNNNNNNGC 3 cut(s) 133, 607, 817
BstNSI RCATGY 1 cut(s) 614
BstPI GGTNACC 1 cut(s) 311
BstSCI CCNGG 3 cut(s) 315, 420, 732
BstV1I GCAGC 2 cut(s) 585, 608
BstX2I RGATCY 3 cut(s) 66, 186, 288
BstYI RGATCY 3 cut(s) 66, 186, 288
BsuRI GGCC 1 cut(s) 562
BtsCI GGATG 2 cut(s) 473, 888
BtsI GCAGTG 1 cut(s) 487
BtsIMutI CAGTG 1 cut(s) 487
Cac8I GCNNGC 5 cut(s) 281, 497, 608, 612, 774
CfoI GCGC 1 cut(s) 820
Cfr10I RCCGGY 1 cut(s) 606
Cfr13I GGNCC 3 cut(s) 176, 568, 806
Csp6I GTAC 2 cut(s) 246, 370
CviAII CATG 4 cut(s) 159, 355, 611, 665
CviJI RGCY 8 cut(s) 420, 461, 495, 562, 606, 657, 726, 848
CviKI_1 RGCY 8 cut(s) 420, 461, 495, 562, 606, 657, 726, 848
CviQI GTAC 2 cut(s) 246, 370
DdeI CTNAG 1 cut(s) 602
DinI GGCGCC 1 cut(s) 819
DpnI GATC 5 cut(s) 68, 188, 290, 396, 913
DpnII GATC 5 cut(s) 66, 186, 288, 394, 911
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Ecl136II GAGCTC 1 cut(s) 848
Eco24I GRGCYC 2 cut(s) 422, 850
Eco47I GGWCC 3 cut(s) 176, 568, 806
Eco53kI GAGCTC 1 cut(s) 848
Eco88I CYCGRG 1 cut(s) 838
Eco91I GGTNACC 1 cut(s) 311
EcoICRI GAGCTC 1 cut(s) 848
EcoO65I GGTNACC 1 cut(s) 311
EcoRI GAATTC 1 cut(s) 4
EcoT38I GRGCYC 2 cut(s) 422, 850
EgeI GGCGCC 1 cut(s) 819
EheI GGCGCC 1 cut(s) 819
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 4 cut(s) 162, 358, 614, 668
FalI AAGNNNNNCTT 4 cut(s) 629, 661, 669, 701
FatI CATG 4 cut(s) 158, 354, 610, 664
FauI CCCGC 2 cut(s) 220, 769
Fnu4HI GCNGC 2 cut(s) 599, 622
FokI GGATG 2 cut(s) 460, 895
FriOI GRGCYC 2 cut(s) 422, 850
Fsp4HI GCNGC 2 cut(s) 599, 622
FspBI CTAG 1 cut(s) 137
GlaI GCGC 1 cut(s) 819
GluI GCNGC 2 cut(s) 599, 622
HaeII RGCGCY 1 cut(s) 821
HaeIII GGCC 1 cut(s) 562
HapII CCGG 7 cut(s) 316, 387, 422, 566, 607, 733, 753
HhaI GCGC 1 cut(s) 820
Hin1I GRCGYC 1 cut(s) 818
Hin1II CATG 4 cut(s) 162, 358, 614, 668
Hin6I GCGC 1 cut(s) 818
HinP1I GCGC 1 cut(s) 818
HpaII CCGG 7 cut(s) 316, 387, 422, 566, 607, 733, 753
HphI GGTGA 2 cut(s) 305, 787
Hpy166II GTNNAC 1 cut(s) 248
Hpy188I TCNGA 3 cut(s) 180, 186, 858
Hpy8I GTNNAC 1 cut(s) 248
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 774
HpyCH4III ACNGT 1 cut(s) 538
HpyF10VI GCNNNNNNNGC 3 cut(s) 133, 607, 817
HpyF3I CTNAG 1 cut(s) 602
Hsp92I GRCGYC 1 cut(s) 818
Hsp92II CATG 4 cut(s) 162, 358, 614, 668
HspAI GCGC 1 cut(s) 818
KasI GGCGCC 1 cut(s) 817
Kpn2I TCCGGA 3 cut(s) 386, 565, 752
KroI GCCGGC 1 cut(s) 606
KroNI GCCGGC 1 cut(s) 608
Kzo9I GATC 5 cut(s) 66, 186, 288, 394, 911
LmnI GCTCC 2 cut(s) 417, 619
Lsp1109I GCAGC 2 cut(s) 585, 608
LweI GCATC 2 cut(s) 720, 759
MaeI CTAG 1 cut(s) 137
MaeIII GTNAC 4 cut(s) 121, 311, 357, 681
MalI GATC 5 cut(s) 68, 188, 290, 396, 913
MbiI CCGCTC 1 cut(s) 776
MboI GATC 5 cut(s) 66, 186, 288, 394, 911
MboII GAAGA 5 cut(s) 30, 61, 251, 425, 913
MfeI CAATTG 1 cut(s) 302
MflI RGATCY 3 cut(s) 66, 186, 288
MhlI GDGCHC 2 cut(s) 422, 850
MluCI AATT 6 cut(s) 4, 254, 302, 374, 740, 759
Mly113I GGCGCC 1 cut(s) 818
MlyI GAGTC 6 cut(s) 33, 424, 634, 689, 786, 850
MmeI TCCRAC 2 cut(s) 467, 530
MnlI CCTC 9 cut(s) 85, 116, 201, 219, 573, 582, 627, 716, 797
MroI TCCGGA 3 cut(s) 386, 565, 752
MroNI GCCGGC 1 cut(s) 606
MseI TTAA 4 cut(s) 131, 266, 401, 758
MspI CCGG 7 cut(s) 316, 387, 422, 566, 607, 733, 753
MspR9I CCNGG 3 cut(s) 317, 422, 734
MunI CAATTG 1 cut(s) 302
Mva1269I GAATGC 1 cut(s) 600
MwoI GCNNNNNNNGC 3 cut(s) 133, 607, 817
NaeI GCCGGC 1 cut(s) 608
NarI GGCGCC 1 cut(s) 818
NciI CCSGG 3 cut(s) 317, 422, 734
NdeII GATC 5 cut(s) 66, 186, 288, 394, 911
NgoMIV GCCGGC 1 cut(s) 606
NlaIII CATG 4 cut(s) 162, 358, 614, 668
NlaIV GGNNCC 4 cut(s) 188, 419, 570, 819
NmuCI GTSAC 2 cut(s) 311, 681
NspI RCATGY 1 cut(s) 614
NspV TTCGAA 1 cut(s) 8
PaeI GCATGC 1 cut(s) 614
PaeR7I CTCGAG 1 cut(s) 838
PctI GAATGC 1 cut(s) 600
PdiI GCCGGC 1 cut(s) 608
PfeI GAWTC 5 cut(s) 181, 468, 576, 749, 918
PkrI GCNGC 2 cut(s) 600, 623
PleI GAGTC 6 cut(s) 33, 424, 634, 688, 786, 849
PluTI GGCGCC 1 cut(s) 821
PpsI GAGTC 6 cut(s) 33, 424, 634, 688, 786, 849
PshBI ATTAAT 1 cut(s) 758
Psp124BI GAGCTC 1 cut(s) 850
PspEI GGTNACC 1 cut(s) 311
PspN4I GGNNCC 4 cut(s) 188, 419, 570, 819
PspPI GGNCC 3 cut(s) 176, 568, 806
PsuI RGATCY 3 cut(s) 66, 186, 288
RsaI GTAC 2 cut(s) 247, 371
RsaNI GTAC 2 cut(s) 246, 370
SacI GAGCTC 1 cut(s) 850
SaqAI TTAA 4 cut(s) 131, 266, 401, 758
SatI GCNGC 2 cut(s) 599, 622
Sau3AI GATC 5 cut(s) 66, 186, 288, 394, 911
Sau96I GGNCC 3 cut(s) 176, 568, 806
SchI GAGTC 6 cut(s) 33, 424, 634, 689, 786, 850
ScrFI CCNGG 3 cut(s) 317, 422, 734
SduI GDGCHC 2 cut(s) 422, 850
SetI ASST 8 cut(s) 142, 178, 220, 313, 497, 520, 850, 865
SfaNI GCATC 2 cut(s) 720, 759
SfoI GGCGCC 1 cut(s) 819
Sfr274I CTCGAG 1 cut(s) 838
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 3 cut(s) 176, 568, 806
SlaI CTCGAG 1 cut(s) 838
SmlI CTYRAG 1 cut(s) 838
SmoI CTYRAG 1 cut(s) 838
SphI GCATGC 1 cut(s) 614
Sse9I AATT 6 cut(s) 4, 254, 302, 374, 740, 759
SsiI CCGC 4 cut(s) 213, 776, 809, 880
SspDI GGCGCC 1 cut(s) 817
SspMI CTAG 1 cut(s) 137
SstI GAGCTC 1 cut(s) 850
StyD4I CCNGG 3 cut(s) 315, 420, 732
TaaI ACNGT 1 cut(s) 538
TaqI TCGA 9 cut(s) 8, 226, 252, 574, 579, 767, 786, 839, 844
TasI AATT 6 cut(s) 4, 254, 302, 374, 740, 759
TfiI GAWTC 5 cut(s) 181, 468, 576, 749, 918
Tru1I TTAA 4 cut(s) 131, 266, 401, 758
Tru9I TTAA 4 cut(s) 131, 266, 401, 758
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 2 cut(s) 311, 681
TseI GCWGC 2 cut(s) 598, 621
Tsp45I GTSAC 2 cut(s) 311, 681
TspDTI ATGAA 6 cut(s) 17, 147, 437, 513, 653, 902
TspGWI ACGGA 1 cut(s) 183
TspRI CASTG 1 cut(s) 487
VpaK11BI GGWCC 3 cut(s) 176, 568, 806
VspI ATTAAT 1 cut(s) 758
XapI RAATTY 1 cut(s) 4
XceI RCATGY 1 cut(s) 614
XhoI CTCGAG 1 cut(s) 838
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.