Rh1BG019600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0018760
Physical Location & Seq
Forward (+)
2638379 .. 2639029
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG019600.1

Sequence Viewer

Length: 651 bp
ATGAATTCGAAAGAACGAAGAAGTAAGGAAATGAGACGACTCTTTCTTGAACTATATCATAAACAGATCTTCCCCTCCACACCAATCACGAGTTTTTCTCCATTCCTCTCGTATATCGTCGTAACGCCCTTAATGCTAGGTTTTGAAAAAGACTTTTCATGTCATTCCCATTTAGGTCCGATTCGGATCCCTCCGTTGTTTCCTTTTCCTCCCGCACCTTTTTCTCGAAATGAGAAAGAAGATGGTACACTCGAATTGTATTATTTAAGTGCTTATTGCTTGCCAAAGATCCTACTTCTACAATTGGTAGGTCACCGGGTTATTCAAATAAGTTGTGTTTTCTGTGGTTTTCCCATGTTACAACTTCTGTACCAATTCAGTCAATCCGGAATGGATCGGTTAAACATTCTATTATGGAGCCCGGTCTTGACTCTTCTATGTGGTATTCATTCTCGTTCGGCTCTTGGAATCACATCCAGCAGTGGTTGGAACAGCTCGCAAAATCCAACCACTTTACCTACTTCATTGCCCCCAACCGTTTCTCGTACGTCTATTGAAACAGAATGGTTTCATGTTCCTTCATCGATTGGTTATTCCTCTCCGTTCGTATCTCTTTTTCCAATTTCGGTCTCGATTAGTTTACAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016021 GO:0031224 GO:0032991 GO:0043190 GO:0044425 GO:0044459 GO:0044464 GO:0071944 GO:0098533 GO:0098796 GO:0098797 GO:1902494 GO:1902495 GO:1904949 GO:1990351
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

24.38

Weight (kDa)

8.63

Isoelectric Point (pI)

74.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018760)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00110
pyrus_communis pycom12401g00250
rosa_chinensis RchiOBHm_MTg0498291
rosa_laevigata RLG00000000353 RLG00000000380 RLG00000000396
rosa_roxburghii Rroxscaffold_2G00119410
rosa_samantha Rh1BG019600
rosa_wichuraiana Rw0G023290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 386
AciI CCGC 1 cut(s) 213
AclWI GGATC 4 cut(s) 181, 194, 283, 402
AcsI RAATTY 1 cut(s) 4
AfaI GTAC 3 cut(s) 247, 371, 547
AgsI TTSAA 4 cut(s) 50, 146, 326, 557
AluBI AGCT 1 cut(s) 495
AluI AGCT 1 cut(s) 495
Alw26I GTCTC 2 cut(s) 28, 634
AlwI GGATC 4 cut(s) 181, 194, 283, 402
Aor13HI TCCGGA 1 cut(s) 386
ApoI RAATTY 1 cut(s) 4
Asp700I GAANNNNTTC 1 cut(s) 567
AspS9I GGNCC 1 cut(s) 176
AsuC2I CCSGG 2 cut(s) 317, 422
AsuHPI GGTGA 1 cut(s) 305
AsuII TTCGAA 1 cut(s) 8
AvaII GGWCC 1 cut(s) 176
BaeI ACNNNNGTAYC 2 cut(s) 353, 386
BamHI GGATCC 1 cut(s) 186
BanII GRGCYC 1 cut(s) 422
BauI CACGAG 1 cut(s) 88
BccI CCATC 1 cut(s) 236
BcnI CCSGG 2 cut(s) 317, 422
BcoDI GTCTC 2 cut(s) 28, 634
BfaI CTAG 1 cut(s) 137
BglII AGATCT 1 cut(s) 66
Bme1390I CCNGG 2 cut(s) 317, 422
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 2 cut(s) 188, 419
BmrFI CCNGG 2 cut(s) 317, 422
BplI GAGNNNNNCTC 2 cut(s) 82, 114
Bpu14I TTCGAA 1 cut(s) 8
BpuMI CCSGG 2 cut(s) 317, 422
Bsa29I ATCGAT 1 cut(s) 584
BsaBI GATNNNNATC 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 634
BsaWI WCCGGW 1 cut(s) 386
Bse3DI GCAATG 1 cut(s) 524
Bse8I GATNNNNATC 1 cut(s) 185
BseAI TCCGGA 1 cut(s) 386
BseCI ATCGAT 1 cut(s) 584
BseGI GGATG 1 cut(s) 473
BseJI GATNNNNATC 1 cut(s) 185
BseMI GCAATG 1 cut(s) 524
BshVI ATCGAT 1 cut(s) 584
BsiSI CCGG 3 cut(s) 316, 387, 422
BsiWI CGTACG 1 cut(s) 545
BsmAI GTCTC 2 cut(s) 28, 634
BsmBI CGTCTC 1 cut(s) 28
Bso31I GGTCTC 1 cut(s) 634
Bsp119I TTCGAA 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 422
Bsp13I TCCGGA 1 cut(s) 386
Bsp143I GATC 4 cut(s) 66, 186, 288, 394
BspACI CCGC 1 cut(s) 213
BspDI ATCGAT 1 cut(s) 584
BspEI TCCGGA 1 cut(s) 386
BspLI GGNNCC 2 cut(s) 188, 419
BspPI GGATC 4 cut(s) 181, 194, 283, 402
BspT104I TTCGAA 1 cut(s) 8
BspTNI GGTCTC 1 cut(s) 634
BsrDI GCAATG 1 cut(s) 524
BssMI GATC 4 cut(s) 66, 186, 288, 394
BssSI CACGAG 1 cut(s) 88
Bst2BI CACGAG 1 cut(s) 88
Bst4CI ACNGT 1 cut(s) 538
Bst6I CTCTTC 1 cut(s) 438
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 281, 497
BstEII GGTNACC 1 cut(s) 311
BstF5I GGATG 1 cut(s) 473
BstKTI GATC 4 cut(s) 69, 189, 291, 397
BstMAI GTCTC 2 cut(s) 28, 634
BstMBI GATC 4 cut(s) 66, 186, 288, 394
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstPI GGTNACC 1 cut(s) 311
BstSCI CCNGG 2 cut(s) 315, 420
BstX2I RGATCY 3 cut(s) 66, 186, 288
BstYI RGATCY 3 cut(s) 66, 186, 288
Bsu15I ATCGAT 1 cut(s) 584
BsuTUI ATCGAT 1 cut(s) 584
BtsCI GGATG 1 cut(s) 473
BtsI GCAGTG 1 cut(s) 487
BtsIMutI CAGTG 1 cut(s) 487
Cac8I GCNNGC 2 cut(s) 281, 497
Cfr13I GGNCC 1 cut(s) 176
ClaI ATCGAT 1 cut(s) 584
Csp6I GTAC 3 cut(s) 246, 370, 546
CviAII CATG 3 cut(s) 159, 355, 572
CviJI RGCY 3 cut(s) 420, 461, 495
CviKI_1 RGCY 3 cut(s) 420, 461, 495
CviQI GTAC 3 cut(s) 246, 370, 546
DpnI GATC 4 cut(s) 68, 188, 290, 396
DpnII GATC 4 cut(s) 66, 186, 288, 394
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Eco24I GRGCYC 1 cut(s) 422
Eco31I GGTCTC 1 cut(s) 634
Eco47I GGWCC 1 cut(s) 176
Eco91I GGTNACC 1 cut(s) 311
EcoO65I GGTNACC 1 cut(s) 311
EcoRI GAATTC 1 cut(s) 4
EcoT38I GRGCYC 1 cut(s) 422
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 3 cut(s) 162, 358, 575
FaiI YATR 8 cut(s) 55, 60, 114, 160, 356, 415, 439, 573
FatI CATG 3 cut(s) 158, 354, 571
FauI CCCGC 1 cut(s) 220
FokI GGATG 1 cut(s) 460
FriOI GRGCYC 1 cut(s) 422
FspBI CTAG 1 cut(s) 137
HapII CCGG 3 cut(s) 316, 387, 422
Hin1II CATG 3 cut(s) 162, 358, 575
HinfI GANTC 4 cut(s) 39, 181, 430, 468
HpaII CCGG 3 cut(s) 316, 387, 422
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 2 cut(s) 248, 641
Hpy188I TCNGA 2 cut(s) 180, 186
Hpy188III TCNNGA 6 cut(s) 47, 88, 225, 387, 427, 631
Hpy8I GTNNAC 2 cut(s) 248, 641
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 588
HpyCH4III ACNGT 1 cut(s) 538
HpyCH4IV ACGT 1 cut(s) 548
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
HpySE526I ACGT 1 cut(s) 548
Hsp92II CATG 3 cut(s) 162, 358, 575
Kpn2I TCCGGA 1 cut(s) 386
Kzo9I GATC 4 cut(s) 66, 186, 288, 394
LmnI GCTCC 1 cut(s) 417
LpnPI CCDG 4 cut(s) 329, 400, 435, 490
MaeI CTAG 1 cut(s) 137
MaeII ACGT 1 cut(s) 548
MaeIII GTNAC 3 cut(s) 121, 311, 357
MalI GATC 4 cut(s) 68, 188, 290, 396
MboI GATC 4 cut(s) 66, 186, 288, 394
MboII GAAGA 4 cut(s) 30, 61, 251, 425
MfeI CAATTG 1 cut(s) 302
MflI RGATCY 3 cut(s) 66, 186, 288
MhlI GDGCHC 1 cut(s) 422
MluCI AATT 5 cut(s) 4, 254, 302, 374, 621
MlyI GAGTC 2 cut(s) 33, 424
MmeI TCCRAC 2 cut(s) 467, 530
MnlI CCTC 5 cut(s) 85, 116, 201, 219, 607
MroI TCCGGA 1 cut(s) 386
MroXI GAANNNNTTC 1 cut(s) 567
MseI TTAA 3 cut(s) 131, 266, 401
MspI CCGG 3 cut(s) 316, 387, 422
MspR9I CCNGG 2 cut(s) 317, 422
MunI CAATTG 1 cut(s) 302
MwoI GCNNNNNNNGC 1 cut(s) 133
NciI CCSGG 2 cut(s) 317, 422
NdeII GATC 4 cut(s) 66, 186, 288, 394
NlaIII CATG 3 cut(s) 162, 358, 575
NlaIV GGNNCC 2 cut(s) 188, 419
NmuCI GTSAC 1 cut(s) 311
NspV TTCGAA 1 cut(s) 8
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 2 cut(s) 181, 468
Pfl23II CGTACG 1 cut(s) 545
PleI GAGTC 2 cut(s) 33, 424
PpsI GAGTC 2 cut(s) 33, 424
PspEI GGTNACC 1 cut(s) 311
PspLI CGTACG 1 cut(s) 545
PspN4I GGNNCC 2 cut(s) 188, 419
PspPI GGNCC 1 cut(s) 176
PsuI RGATCY 3 cut(s) 66, 186, 288
RsaI GTAC 3 cut(s) 247, 371, 547
RsaNI GTAC 3 cut(s) 246, 370, 546
SaqAI TTAA 3 cut(s) 131, 266, 401
Sau3AI GATC 4 cut(s) 66, 186, 288, 394
Sau96I GGNCC 1 cut(s) 176
SchI GAGTC 2 cut(s) 33, 424
ScrFI CCNGG 2 cut(s) 317, 422
SduI GDGCHC 1 cut(s) 422
SetI ASST 7 cut(s) 142, 178, 220, 313, 497, 520, 551
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 1 cut(s) 176
Sse9I AATT 5 cut(s) 4, 254, 302, 374, 621
SsiI CCGC 1 cut(s) 213
SspMI CTAG 1 cut(s) 137
StyD4I CCNGG 2 cut(s) 315, 420
TaaI ACNGT 1 cut(s) 538
TaiI ACGT 1 cut(s) 551
TaqI TCGA 5 cut(s) 8, 226, 252, 584, 632
TaqII GACCGA 1 cut(s) 616
TasI AATT 5 cut(s) 4, 254, 302, 374, 621
TfiI GAWTC 2 cut(s) 181, 468
Tru1I TTAA 3 cut(s) 131, 266, 401
Tru9I TTAA 3 cut(s) 131, 266, 401
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 6 cut(s) 17, 147, 437, 513, 560, 570
TspGWI ACGGA 2 cut(s) 183, 591
TspRI CASTG 1 cut(s) 487
VpaK11BI GGWCC 1 cut(s) 176
XapI RAATTY 1 cut(s) 4
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.