Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0019160

Physical Location & Seq

Genomic Coordinates Forward (+)

157491 .. 158351

Gene Structure 861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATMG00570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

AATCCTTCACTTTTAGCTTTGAATTACTTATATATATCCTATGAATTTAATTTCGCATCGGAAACGATTCTAGGAGAAGTTCGAATCCGTTCCGTTCGGATATTGATCGGTCTTGGTTTGACATGGTTTACGTGTTACTGGTTCCCGGAAGAGTTAATATCTCCATTAGCGTCACCCTTTCTTACCCTGCCTTTTGACTCGTATTTTGTTTGTACACAATTAACGGAGGCCTTTTCGACATTTGTTGCAACGTCTTCAATAGCATGCTCTTATTTCGTCTTTCCTTTAATAAGTTATCAAATTTGGTGCTTTTTGATCCCCAGTTGCTATGGAGAACAAAGGACGAAATACAATCGATTCCTCCATTTAAGTGGTTCTCGCTTCTTCTTGTTCCTGTTCCTAACTCCTCCCCGGGTCGTTCCCAATGTTTGGCACTTTCCATACTTCGTGGGTGCAACATCAACAAATTCGCTCATGATCAAGTTACAACCTAAGATCTATGACCATATTATGTTAACTGTTCGTATTTCGTTCATTCCATCGGTATGCTCCCAGGTACCTGTAATTGTGATCTGTTTGCCAGAACCAAGGGGTCTTTCTTTGGAAACCTTCACGAACAATCGTCGTTTTTTGATGGTTTTTCCGCTTCTCACAGCTGCTCTTTCCACACCTCCGGATATCTGGTGCCAAATCGTCGCCCGTTTCCTTATTTCTTTGATAATAGAGTTGGCTATTTTTGTGGCATCGATTGTACAAGTTCGTGAAGAGGGCTGGACGAGTGGAATGAGGGAGAGCGGCTCGATCGAGAAAAAAAATAAGAGTAGCCCCCCCCCTAGAACCTGGCAAAGTAACTATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009977 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0022804 GO:0022857 GO:0022884 GO:0032991 GO:0033036 GO:0033281 GO:0034613 GO:0042886 GO:0042887 GO:0043953 GO:0044425 GO:0044459 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071944 GO:0098796 GO:0098797 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TatC

Protein Analysis

286

Amino Acids

32.82

Weight (kDa)

8.62

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TatC	PF00902	23 - 232	1.5e-26	Sec-independent protein translocase protein (TatC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00570
malus_domestica	MD15G1309600.v1.1
pyrus_communis	pycom12401g00100
rosa_chinensis	RchiOBHm_MTg0499111
rosa_laevigata	RLG00000000278 RLG00000000405 RLG00000000480
rosa_samantha	Rh3BG350200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	556
AccB1I	GGYRCC	2 cut(s)	556, 684
AccB7I	CCANNNNNTGG	1 cut(s)	429
AccBSI	CCGCTC	1 cut(s)	795
AccIII	TCCGGA	1 cut(s)	673
AciI	CCGC	2 cut(s)	644, 795
AclWI	GGATC	1 cut(s)	310
AcsI	RAATTY	3 cut(s)	44, 300, 466
AfaI	GTAC	3 cut(s)	214, 558, 753
AfiI	CCNNNNNNNGG	1 cut(s)	429
AflIII	ACRYGT	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	22, 258
AjnI	CCWGG	2 cut(s)	552, 839
AjuI	GAANNNNNNNTTGG	2 cut(s)	580, 612
AluBI	AGCT	2 cut(s)	17, 656
AluI	AGCT	2 cut(s)	17, 656
AlwI	GGATC	1 cut(s)	310
Ama87I	CYCGRG	1 cut(s)	411
Aor13HI	TCCGGA	1 cut(s)	673
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	1 cut(s)	656
ApoI	RAATTY	3 cut(s)	44, 300, 466
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
Asp700I	GAANNNNTTC	2 cut(s)	66, 88
Asp718I	GGTACC	1 cut(s)	556
AsuC2I	CCSGG	3 cut(s)	146, 412, 413
AsuHPI	GGTGA	1 cut(s)	165
AsuII	TTCGAA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	411
BanI	GGYRCC	2 cut(s)	556, 684
BbsI	GAAGAC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	643
BccI	CCATC	2 cut(s)	547, 628
BciT130I	CCWGG	2 cut(s)	554, 841
BclI	TGATCA	1 cut(s)	477
BcnI	CCSGG	3 cut(s)	146, 412, 413
BfaI	CTAG	2 cut(s)	71, 834
BglII	AGATCT	1 cut(s)	495
BisI	GCNGC	2 cut(s)	657, 796
BlsI	GCNGC	2 cut(s)	658, 797
Bme1390I	CCNGG	5 cut(s)	146, 412, 413, 554, 841
BmeT110I	CYCGRG	1 cut(s)	411
BmiI	GGNNCC	3 cut(s)	143, 558, 686
BmrFI	CCNGG	5 cut(s)	146, 412, 413, 554, 841
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	2 cut(s)	65, 752
BmuI	ACTGGG	1 cut(s)	315
BpiI	GAAGAC	1 cut(s)	246
BplI	GAGNNNNNCTC	2 cut(s)	782, 814
Bpu14I	TTCGAA	1 cut(s)	82
BpuMI	CCSGG	3 cut(s)	146, 412, 413
Bsa29I	ATCGAT	2 cut(s)	355, 746
BsaAI	YACGTR	1 cut(s)	132
BsaBI	GATNNNNATC	1 cut(s)	104
BsaJI	CCNNGG	4 cut(s)	410, 411, 552, 587
BsaWI	WCCGGW	1 cut(s)	673
Bsc4I	CCNNNNNNNGG	1 cut(s)	429
Bse1I	ACTGG	2 cut(s)	143, 321
Bse8I	GATNNNNATC	1 cut(s)	104
BseAI	TCCGGA	1 cut(s)	673
BseBI	CCWGG	2 cut(s)	554, 841
BseCI	ATCGAT	2 cut(s)	355, 746
BseDI	CCNNGG	4 cut(s)	410, 411, 552, 587
BseJI	GATNNNNATC	1 cut(s)	104
BseLI	CCNNNNNNNGG	1 cut(s)	429
BseNI	ACTGG	2 cut(s)	143, 321
BseRI	GAGGAG	1 cut(s)	396
BseXI	GCAGC	1 cut(s)	643
Bsh1285I	CGRYCG	1 cut(s)	804
BshFI	GGCC	1 cut(s)	230
BshNI	GGYRCC	2 cut(s)	556, 684
BshVI	ATCGAT	2 cut(s)	355, 746
BsiEI	CGRYCG	1 cut(s)	804
BsiHKCI	CYCGRG	1 cut(s)	411
BsiSI	CCGG	3 cut(s)	146, 412, 674
BslI	CCNNNNNNNGG	1 cut(s)	429
BsnI	GGCC	1 cut(s)	230
BsoBI	CYCGRG	1 cut(s)	411
Bsp119I	TTCGAA	1 cut(s)	82
Bsp13I	TCCGGA	1 cut(s)	673
Bsp1407I	TGTACA	2 cut(s)	212, 751
Bsp143I	GATC	6 cut(s)	105, 315, 477, 495, 570, 801
BspACI	CCGC	2 cut(s)	644, 795
BspANI	GGCC	1 cut(s)	230
BspDI	ATCGAT	2 cut(s)	355, 746
BspEI	TCCGGA	1 cut(s)	673
BspHI	TCATGA	1 cut(s)	474
BspLI	GGNNCC	3 cut(s)	143, 558, 686
BspPI	GGATC	1 cut(s)	310
BspT104I	TTCGAA	1 cut(s)	82
BspT107I	GGYRCC	2 cut(s)	556, 684
BsrBI	CCGCTC	1 cut(s)	795
BsrGI	TGTACA	2 cut(s)	212, 751
BsrI	ACTGG	2 cut(s)	143, 321
BssECI	CCNNGG	4 cut(s)	410, 411, 552, 587
BssMI	GATC	6 cut(s)	105, 315, 477, 495, 570, 801
BssT1I	CCWWGG	1 cut(s)	587
Bst2UI	CCWGG	2 cut(s)	554, 841
Bst4CI	ACNGT	1 cut(s)	520
Bst6I	CTCTTC	2 cut(s)	144, 759
BstAUI	TGTACA	2 cut(s)	212, 751
BstBAI	YACGTR	1 cut(s)	132
BstBI	TTCGAA	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	1 cut(s)	492
BstKTI	GATC	6 cut(s)	108, 318, 480, 498, 573, 804
BstMBI	GATC	6 cut(s)	105, 315, 477, 495, 570, 801
BstMCI	CGRYCG	1 cut(s)	804
BstNI	CCWGG	2 cut(s)	554, 841
BstNSI	RCATGY	1 cut(s)	267
BstSCI	CCNGG	5 cut(s)	144, 410, 411, 552, 839
BstV1I	GCAGC	1 cut(s)	643
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	495
BstXI	CCANNNNNNTGG	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	495
Bsu15I	ATCGAT	2 cut(s)	355, 746
BsuRI	GGCC	1 cut(s)	230
BsuTUI	ATCGAT	2 cut(s)	355, 746
Cac8I	GCNNGC	1 cut(s)	265
CciI	TCATGA	1 cut(s)	474
Cfr9I	CCCGGG	1 cut(s)	411
ClaI	ATCGAT	2 cut(s)	355, 746
CseI	GACGC	1 cut(s)	159
Csp6I	GTAC	3 cut(s)	213, 557, 752
CviAII	CATG	3 cut(s)	123, 264, 475
CviJI	RGCY	7 cut(s)	17, 230, 656, 731, 771, 798, 825
CviKI_1	RGCY	7 cut(s)	17, 230, 656, 731, 771, 798, 825
CviQI	GTAC	3 cut(s)	213, 557, 752
DdeI	CTNAG	1 cut(s)	492
DpnI	GATC	6 cut(s)	107, 317, 479, 497, 572, 803
DpnII	GATC	6 cut(s)	105, 315, 477, 495, 570, 801
Eam1104I	CTCTTC	2 cut(s)	144, 759
EarI	CTCTTC	2 cut(s)	144, 759
Eco130I	CCWWGG	1 cut(s)	587
Eco147I	AGGCCT	1 cut(s)	230
Eco32I	GATATC	1 cut(s)	679
Eco88I	CYCGRG	1 cut(s)	411
EcoRII	CCWGG	2 cut(s)	552, 839
EcoRV	GATATC	1 cut(s)	679
EcoT14I	CCWWGG	1 cut(s)	587
ErhI	CCWWGG	1 cut(s)	587
FaeI	CATG	3 cut(s)	126, 267, 478
FatI	CATG	3 cut(s)	122, 263, 474
FbaI	TGATCA	1 cut(s)	477
Fnu4HI	GCNGC	2 cut(s)	657, 796
Fsp4HI	GCNGC	2 cut(s)	657, 796
FspBI	CTAG	2 cut(s)	71, 834
GluI	GCNGC	2 cut(s)	657, 796
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	3 cut(s)	146, 412, 674
HgaI	GACGC	1 cut(s)	159
Hin1II	CATG	3 cut(s)	126, 267, 478
HincII	GTYRAC	1 cut(s)	516
HindII	GTYRAC	1 cut(s)	516
HinfI	GANTC	4 cut(s)	67, 84, 197, 357
HpaI	GTTAAC	1 cut(s)	516
HpaII	CCGG	3 cut(s)	146, 412, 674
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	3 cut(s)	129, 215, 516
Hpy188I	TCNGA	2 cut(s)	61, 99
Hpy188III	TCNNGA	5 cut(s)	475, 613, 674, 761, 805
Hpy8I	GTNNAC	3 cut(s)	129, 215, 516
Hpy99I	CGWCG	2 cut(s)	627, 698
HpyAV	CCTTC	2 cut(s)	15, 619
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4IV	ACGT	2 cut(s)	131, 251
HpyCH4V	TGCA	2 cut(s)	248, 455
HpyF3I	CTNAG	1 cut(s)	492
HpySE526I	ACGT	2 cut(s)	131, 251
Hsp92II	CATG	3 cut(s)	126, 267, 478
Kpn2I	TCCGGA	1 cut(s)	673
KpnI	GGTACC	1 cut(s)	560
Ksp22I	TGATCA	1 cut(s)	477
KspAI	GTTAAC	1 cut(s)	516
Kzo9I	GATC	6 cut(s)	105, 315, 477, 495, 570, 801
LmnI	GCTCC	1 cut(s)	554
Lsp1109I	GCAGC	1 cut(s)	643
LweI	GCATC	2 cut(s)	65, 752
MaeI	CTAG	2 cut(s)	71, 834
MaeII	ACGT	2 cut(s)	131, 251
MaeIII	GTNAC	4 cut(s)	134, 171, 483, 848
MalI	GATC	6 cut(s)	107, 317, 479, 497, 572, 803
MbiI	CCGCTC	1 cut(s)	795
MboI	GATC	6 cut(s)	105, 315, 477, 495, 570, 801
MboII	GAAGA	4 cut(s)	161, 246, 376, 776
MflI	RGATCY	1 cut(s)	495
MluCI	AATT	7 cut(s)	22, 44, 49, 218, 300, 466, 564
MlyI	GAGTC	1 cut(s)	191
MnlI	CCTC	6 cut(s)	220, 371, 417, 681, 760, 780
MroI	TCCGGA	1 cut(s)	673
MroXI	GAANNNNTTC	2 cut(s)	66, 88
MseI	TTAA	6 cut(s)	48, 155, 221, 287, 368, 515
MslI	CAYNNNNRTG	2 cut(s)	369, 544
MspA1I	CMGCKG	1 cut(s)	656
MspI	CCGG	3 cut(s)	146, 412, 674
MspR9I	CCNGG	5 cut(s)	146, 412, 413, 554, 841
MvaI	CCWGG	2 cut(s)	554, 841
NciI	CCSGG	3 cut(s)	146, 412, 413
NdeII	GATC	6 cut(s)	105, 315, 477, 495, 570, 801
NlaIII	CATG	3 cut(s)	126, 267, 478
NlaIV	GGNNCC	3 cut(s)	143, 558, 686
NmuCI	GTSAC	1 cut(s)	171
NspI	RCATGY	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	82
PaeI	GCATGC	1 cut(s)	267
PagI	TCATGA	1 cut(s)	474
PceI	AGGCCT	1 cut(s)	230
PdmI	GAANNNNTTC	2 cut(s)	66, 88
PfeI	GAWTC	3 cut(s)	67, 84, 357
PflMI	CCANNNNNTGG	1 cut(s)	429
PfoI	TCCNGGA	1 cut(s)	144
PkrI	GCNGC	2 cut(s)	658, 797
Ple19I	CGATCG	1 cut(s)	804
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
Ppu21I	YACGTR	1 cut(s)	132
Psp6I	CCWGG	2 cut(s)	552, 839
PspGI	CCWGG	2 cut(s)	552, 839
PspN4I	GGNNCC	3 cut(s)	143, 558, 686
PsuI	RGATCY	1 cut(s)	495
PvuI	CGATCG	1 cut(s)	804
PvuII	CAGCTG	1 cut(s)	656
RsaI	GTAC	3 cut(s)	214, 558, 753
RsaNI	GTAC	3 cut(s)	213, 557, 752
RseI	CAYNNNNRTG	2 cut(s)	369, 544
SaqAI	TTAA	6 cut(s)	48, 155, 221, 287, 368, 515
SatI	GCNGC	2 cut(s)	657, 796
Sau3AI	GATC	6 cut(s)	105, 315, 477, 495, 570, 801
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	5 cut(s)	146, 412, 413, 554, 841
SfaNI	GCATC	2 cut(s)	65, 752
SfuI	TTCGAA	1 cut(s)	82
SmaI	CCCGGG	1 cut(s)	413
SmiMI	CAYNNNNRTG	2 cut(s)	369, 544
SphI	GCATGC	1 cut(s)	267
Sse9I	AATT	7 cut(s)	22, 44, 49, 218, 300, 466, 564
SseBI	AGGCCT	1 cut(s)	230
SsiI	CCGC	2 cut(s)	644, 795
SspMI	CTAG	2 cut(s)	71, 834
StuI	AGGCCT	1 cut(s)	230
StyD4I	CCNGG	5 cut(s)	144, 410, 411, 552, 839
StyI	CCWWGG	1 cut(s)	587
TaaI	ACNGT	1 cut(s)	520
TaiI	ACGT	2 cut(s)	134, 254
TaqI	TCGA	6 cut(s)	82, 236, 355, 746, 800, 804
TaqII	GACCGA	1 cut(s)	98
TasI	AATT	7 cut(s)	22, 44, 49, 218, 300, 466, 564
TatI	WGTACW	2 cut(s)	212, 751
TauI	GCSGC	1 cut(s)	798
TfiI	GAWTC	3 cut(s)	67, 84, 357
Tru1I	TTAA	6 cut(s)	48, 155, 221, 287, 368, 515
Tru9I	TTAA	6 cut(s)	48, 155, 221, 287, 368, 515
TseFI	GTSAC	1 cut(s)	171
TseI	GCWGC	1 cut(s)	656
Tsp45I	GTSAC	1 cut(s)	171
TspDTI	ATGAA	2 cut(s)	57, 523
TspGWI	ACGGA	3 cut(s)	77, 82, 239
TspMI	CCCGGG	1 cut(s)	411
Van91I	CCANNNNNTGG	1 cut(s)	429
XapI	RAATTY	3 cut(s)	44, 300, 466
XceI	RCATGY	1 cut(s)	267
XmaI	CCCGGG	1 cut(s)	411
XmnI	GAANNNNTTC	2 cut(s)	66, 88
XspI	CTAG	2 cut(s)	71, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.