Rh3BG350200

MttB protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0019160
Physical Location & Seq
Forward (+)
40505516 .. 40505863
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG350200.1

Sequence Viewer

Length: 348 bp
ATGATCAAGTTACAACCTAAGATCTATGACCATATTATGTTAACTGTTCGTATTTCGTTCATTCCATCGGTATGCTCCCAGGTACCCGTAATTGTGATCCGTTTACTAGAACTAAAGGGTCTTTATGTCGAAACCTTCACGAACAATCGTCTTTTTTTGATGGTTTTTCCGCTTCTCACAGCTGCTCTTTCTACACCCCCGGATATCTGGTGCCAAATTGTCGCCCGTTTCCTTATTTCTTCGATAATAGAGTTGGCTATATTTGTGGCATCGATTGTACAAGTTCGTGAAGAAGGCTGGACGAGTGGAATGAGGGAAAGCGGCTCGATCGACAAAAAAGAAGAGTAG

Protein Analysis

115

Amino Acids

13.07

Weight (kDa)

6.58

Isoelectric Point (pI)

32.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TatC PF00902 4 - 74 8.7e-07 Sec-independent protein translocase protein (TatC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019160)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00570
malus_domestica MD15G1309600.v1.1
pyrus_communis pycom12401g00100
rosa_chinensis RchiOBHm_MTg0499111
rosa_laevigata RLG00000000278 RLG00000000405 RLG00000000480
rosa_samantha Rh3BG350200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 82
AccB1I GGYRCC 2 cut(s) 82, 210
AciI CCGC 2 cut(s) 170, 321
AclWI GGATC 1 cut(s) 91
AfaI GTAC 2 cut(s) 84, 279
AjnI CCWGG 1 cut(s) 78
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
AlwI GGATC 1 cut(s) 91
ApeKI GCWGC 1 cut(s) 182
Asp718I GGTACC 1 cut(s) 82
AsuC2I CCSGG 1 cut(s) 200
BanI GGYRCC 2 cut(s) 82, 210
BbvI GCAGC 1 cut(s) 169
BccI CCATC 2 cut(s) 73, 154
BciT130I CCWGG 1 cut(s) 80
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 200
BfaI CTAG 1 cut(s) 107
BglII AGATCT 1 cut(s) 21
BisI GCNGC 2 cut(s) 183, 322
BlsI GCNGC 2 cut(s) 184, 323
Bme1390I CCNGG 2 cut(s) 80, 200
BmiI GGNNCC 2 cut(s) 84, 212
BmrFI CCNGG 2 cut(s) 80, 200
BmsI GCATC 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 200
Bsa29I ATCGAT 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 78, 198
BseBI CCWGG 1 cut(s) 80
BseCI ATCGAT 1 cut(s) 272
BseDI CCNNGG 2 cut(s) 78, 198
BseXI GCAGC 1 cut(s) 169
Bsh1285I CGRYCG 1 cut(s) 330
BshNI GGYRCC 2 cut(s) 82, 210
BshVI ATCGAT 1 cut(s) 272
BsiEI CGRYCG 1 cut(s) 330
BsiSI CCGG 1 cut(s) 200
Bsp1407I TGTACA 1 cut(s) 277
Bsp143I GATC 4 cut(s) 3, 21, 96, 327
BspACI CCGC 2 cut(s) 170, 321
BspDI ATCGAT 1 cut(s) 272
BspLI GGNNCC 2 cut(s) 84, 212
BspPI GGATC 1 cut(s) 91
BspT107I GGYRCC 2 cut(s) 82, 210
BsrGI TGTACA 1 cut(s) 277
BssECI CCNNGG 2 cut(s) 78, 198
BssMI GATC 4 cut(s) 3, 21, 96, 327
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 1 cut(s) 336
BstAUI TGTACA 1 cut(s) 277
BstDEI CTNAG 1 cut(s) 18
BstKTI GATC 4 cut(s) 6, 24, 99, 330
BstMBI GATC 4 cut(s) 3, 21, 96, 327
BstMCI CGRYCG 1 cut(s) 330
BstNI CCWGG 1 cut(s) 80
BstSCI CCNGG 2 cut(s) 78, 198
BstV1I GCAGC 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 21
BstYI RGATCY 1 cut(s) 21
Bsu15I ATCGAT 1 cut(s) 272
BsuTUI ATCGAT 1 cut(s) 272
ClaI ATCGAT 1 cut(s) 272
Csp6I GTAC 2 cut(s) 83, 278
CviJI RGCY 4 cut(s) 182, 257, 297, 324
CviKI_1 RGCY 4 cut(s) 182, 257, 297, 324
CviQI GTAC 2 cut(s) 83, 278
DdeI CTNAG 1 cut(s) 18
DpnI GATC 4 cut(s) 5, 23, 98, 329
DpnII GATC 4 cut(s) 3, 21, 96, 327
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Eco32I GATATC 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 78
EcoRV GATATC 1 cut(s) 205
FaiI YATR 6 cut(s) 27, 33, 38, 73, 126, 260
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 183, 322
Fsp4HI GCNGC 2 cut(s) 183, 322
FspBI CTAG 1 cut(s) 107
GluI GCNGC 2 cut(s) 183, 322
HapII CCGG 1 cut(s) 200
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HpaI GTTAAC 1 cut(s) 42
HpaII CCGG 1 cut(s) 200
Hpy166II GTNNAC 2 cut(s) 42, 104
Hpy188III TCNNGA 2 cut(s) 139, 287
Hpy8I GTNNAC 2 cut(s) 42, 104
HpyAV CCTTC 2 cut(s) 145, 287
HpyCH4III ACNGT 1 cut(s) 46
HpyF3I CTNAG 1 cut(s) 18
KpnI GGTACC 1 cut(s) 86
Ksp22I TGATCA 1 cut(s) 3
KspAI GTTAAC 1 cut(s) 42
Kzo9I GATC 4 cut(s) 3, 21, 96, 327
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 5 cut(s) 65, 92, 193, 213, 283
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 278
MaeI CTAG 1 cut(s) 107
MaeIII GTNAC 1 cut(s) 9
MalI GATC 4 cut(s) 5, 23, 98, 329
MboI GATC 4 cut(s) 3, 21, 96, 327
MboII GAAGA 2 cut(s) 231, 302
MflI RGATCY 1 cut(s) 21
MluCI AATT 2 cut(s) 90, 216
MnlI CCTC 1 cut(s) 306
MseI TTAA 1 cut(s) 41
MslI CAYNNNNRTG 1 cut(s) 70
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 2 cut(s) 80, 200
MvaI CCWGG 1 cut(s) 80
NciI CCSGG 1 cut(s) 200
NdeII GATC 4 cut(s) 3, 21, 96, 327
NlaIV GGNNCC 2 cut(s) 84, 212
PkrI GCNGC 2 cut(s) 184, 323
Ple19I CGATCG 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 2 cut(s) 84, 212
PsuI RGATCY 1 cut(s) 21
PvuI CGATCG 1 cut(s) 330
PvuII CAGCTG 1 cut(s) 182
RsaI GTAC 2 cut(s) 84, 279
RsaNI GTAC 2 cut(s) 83, 278
RseI CAYNNNNRTG 1 cut(s) 70
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 2 cut(s) 183, 322
Sau3AI GATC 4 cut(s) 3, 21, 96, 327
ScrFI CCNGG 2 cut(s) 80, 200
SetI ASST 4 cut(s) 19, 84, 137, 184
SfaNI GCATC 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 70
Sse9I AATT 2 cut(s) 90, 216
SsiI CCGC 2 cut(s) 170, 321
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 2 cut(s) 78, 198
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 5 cut(s) 129, 242, 272, 326, 330
TasI AATT 2 cut(s) 90, 216
TatI WGTACW 1 cut(s) 277
TauI GCSGC 1 cut(s) 324
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 49
TspGWI ACGGA 1 cut(s) 89
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.