Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0019160

Physical Location & Seq

Genomic Coordinates Reverse (-)

31075484 .. 31076207

Gene Structure 724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1309600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGATCACGTACAGAAGTGCTAGCCTTCGGCTCGACAATATGGAACGTCTCAACAATTCTCGTTCCTTTATAAGTTGCTATGGAGAACAAAGGACGAAATACAATCAATTCCTCTATTTAAGTGGCTCTCGCTTATCTTTGTTTTGGTTTCTAACCTTTCCCTGGGTAATTCCCAATGTTTGGTACTTTCCATACTTCGTGGGTGCAACATCAACAAATTCGCTCATGATCAAGTTACAACCTAATATCTATGACCATATTATATTAACTGTTCGTATTTCATTCATTCCATCGATATGCTCCCAAGTACCTGTAATTATGCTTCGTTTGTCAGAACCAAGAGGTCTTTCTGTGGAAACCTTCACAAACAATCGTCGTTTTTTTTATGGTTTTTCTGCTTTTCACAGCTGCTCTTTCTACACCCTTGGATATCTGATGCCAAACCGTTGCCCGTTTCCTTATTTCTTCAATAATAGAATTTGCTATCTTTGTGGCGTCTATTGTACAAGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009977 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0022804 GO:0022857 GO:0022884 GO:0032991 GO:0033036 GO:0033281 GO:0034613 GO:0042886 GO:0042887 GO:0043953 GO:0044425 GO:0044459 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071944 GO:0098796 GO:0098797 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TatC

Protein Analysis

172

Amino Acids

20.18

Weight (kDa)

9.39

Isoelectric Point (pI)

50.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0019160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00570
malus_domestica	MD15G1309600.v1.1
pyrus_communis	pycom12401g00100
rosa_chinensis	RchiOBHm_MTg0499111
rosa_laevigata	RLG00000000278 RLG00000000405 RLG00000000480
rosa_samantha	Rh3BG350200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	71
AccB7I	CCANNNNNTGG	1 cut(s)	180
AcsI	RAATTY	2 cut(s)	217, 477
AcyI	GRCGYC	1 cut(s)	495
AfaI	GTAC	4 cut(s)	11, 185, 309, 505
AfiI	CCNNNNNNNGG	2 cut(s)	162, 180
AgsI	TTSAA	1 cut(s)	469
AjnI	CCWGG	1 cut(s)	161
AjuI	GAANNNNNNNTTGG	2 cut(s)	331, 363
AluBI	AGCT	1 cut(s)	408
AluI	AGCT	1 cut(s)	408
Alw26I	GTCTC	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	408
ApoI	RAATTY	2 cut(s)	217, 477
AsuNHI	GCTAGC	1 cut(s)	20
BarI	GAAGNNNNNNTAC	2 cut(s)	306, 338
BbvI	GCAGC	1 cut(s)	395
BccI	CCATC	1 cut(s)	298
BciT130I	CCWGG	1 cut(s)	163
BclI	TGATCA	2 cut(s)	3, 228
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	1 cut(s)	21
BisI	GCNGC	1 cut(s)	409
BlsI	GCNGC	1 cut(s)	410
Bme1390I	CCNGG	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	1 cut(s)	426
BmtI	GCTAGC	1 cut(s)	24
Bsa29I	ATCGAT	1 cut(s)	293
BsaAI	YACGTR	1 cut(s)	9
BsaHI	GRCGYC	1 cut(s)	495
BsaJI	CCNNGG	3 cut(s)	161, 162, 424
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 180
BseBI	CCWGG	1 cut(s)	163
BseCI	ATCGAT	1 cut(s)	293
BseDI	CCNNGG	3 cut(s)	161, 162, 424
BseLI	CCNNNNNNNGG	2 cut(s)	162, 180
BseXI	GCAGC	1 cut(s)	395
BshVI	ATCGAT	1 cut(s)	293
BslI	CCNNNNNNNGG	2 cut(s)	162, 180
BsmAI	GTCTC	1 cut(s)	53
BsmBI	CGTCTC	1 cut(s)	53
Bsp1407I	TGTACA	1 cut(s)	503
Bsp143I	GATC	2 cut(s)	3, 228
BspDI	ATCGAT	1 cut(s)	293
BspHI	TCATGA	2 cut(s)	225, 512
BspOI	GCTAGC	1 cut(s)	24
BsrGI	TGTACA	1 cut(s)	503
BssECI	CCNNGG	3 cut(s)	161, 162, 424
BssMI	GATC	2 cut(s)	3, 228
BssNI	GRCGYC	1 cut(s)	495
BssT1I	CCWWGG	1 cut(s)	424
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	2 cut(s)	271, 446
BstACI	GRCGYC	1 cut(s)	495
BstAUI	TGTACA	1 cut(s)	503
BstBAI	YACGTR	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	22
BstKTI	GATC	2 cut(s)	6, 231
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	2 cut(s)	3, 228
BstNI	CCWGG	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	395
Bsu15I	ATCGAT	1 cut(s)	293
BsuTUI	ATCGAT	1 cut(s)	293
Cac8I	GCNNGC	1 cut(s)	22
CciI	TCATGA	2 cut(s)	225, 512
ClaI	ATCGAT	1 cut(s)	293
CseI	GACGC	1 cut(s)	484
Csp6I	GTAC	4 cut(s)	10, 184, 308, 504
CviAII	CATG	2 cut(s)	226, 513
CviJI	RGCY	4 cut(s)	24, 31, 126, 408
CviKI_1	RGCY	4 cut(s)	24, 31, 126, 408
CviQI	GTAC	4 cut(s)	10, 184, 308, 504
DpnI	GATC	2 cut(s)	5, 230
DpnII	GATC	2 cut(s)	3, 228
Eco130I	CCWWGG	1 cut(s)	424
Eco32I	GATATC	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	161
EcoRV	GATATC	1 cut(s)	431
EcoT14I	CCWWGG	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	424
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	2 cut(s)	229, 516
FatI	CATG	2 cut(s)	225, 512
FbaI	TGATCA	2 cut(s)	3, 228
Fnu4HI	GCNGC	1 cut(s)	409
Fsp4HI	GCNGC	1 cut(s)	409
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	1 cut(s)	409
HgaI	GACGC	1 cut(s)	484
Hin1I	GRCGYC	1 cut(s)	495
Hin1II	CATG	2 cut(s)	229, 516
Hpy188I	TCNGA	2 cut(s)	334, 435
Hpy188III	TCNNGA	2 cut(s)	226, 513
Hpy99I	CGWCG	1 cut(s)	378
HpyAV	CCTTC	2 cut(s)	35, 370
HpyCH4III	ACNGT	2 cut(s)	271, 446
HpyCH4IV	ACGT	2 cut(s)	8, 46
HpyCH4V	TGCA	1 cut(s)	206
HpySE526I	ACGT	2 cut(s)	8, 46
Hsp92I	GRCGYC	1 cut(s)	495
Hsp92II	CATG	2 cut(s)	229, 516
Ksp22I	TGATCA	2 cut(s)	3, 228
Kzo9I	GATC	2 cut(s)	3, 228
LmnI	GCTCC	1 cut(s)	305
LpnPI	CCDG	3 cut(s)	148, 175, 324
Lsp1109I	GCAGC	1 cut(s)	395
LweI	GCATC	1 cut(s)	426
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	2 cut(s)	8, 46
MaeIII	GTNAC	1 cut(s)	234
MalI	GATC	2 cut(s)	5, 230
MboI	GATC	2 cut(s)	3, 228
MboII	GAAGA	1 cut(s)	457
MluCI	AATT	6 cut(s)	55, 107, 168, 217, 315, 477
MnlI	CCTC	2 cut(s)	122, 335
MseI	TTAA	2 cut(s)	119, 266
MslI	CAYNNNNRTG	1 cut(s)	295
MspA1I	CMGCKG	1 cut(s)	408
MspR9I	CCNGG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	163
NdeII	GATC	2 cut(s)	3, 228
NheI	GCTAGC	1 cut(s)	20
NlaIII	CATG	2 cut(s)	229, 516
PagI	TCATGA	2 cut(s)	225, 512
PasI	CCCWGGG	1 cut(s)	162
PflMI	CCANNNNNTGG	1 cut(s)	180
PkrI	GCNGC	1 cut(s)	410
Ppu21I	YACGTR	1 cut(s)	9
PsiI	TTATAA	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PvuII	CAGCTG	1 cut(s)	408
RsaI	GTAC	4 cut(s)	11, 185, 309, 505
RsaNI	GTAC	4 cut(s)	10, 184, 308, 504
RseI	CAYNNNNRTG	1 cut(s)	295
SaqAI	TTAA	2 cut(s)	119, 266
SatI	GCNGC	1 cut(s)	409
Sau3AI	GATC	2 cut(s)	3, 228
ScrFI	CCNGG	1 cut(s)	163
SetI	ASST	8 cut(s)	11, 49, 158, 244, 313, 346, 362, 410
SfaNI	GCATC	1 cut(s)	426
SmiMI	CAYNNNNRTG	1 cut(s)	295
Sse9I	AATT	6 cut(s)	55, 107, 168, 217, 315, 477
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	424
TaaI	ACNGT	2 cut(s)	271, 446
TaiI	ACGT	2 cut(s)	11, 49
TaqI	TCGA	2 cut(s)	33, 293
TasI	AATT	6 cut(s)	55, 107, 168, 217, 315, 477
TatI	WGTACW	1 cut(s)	503
Tru1I	TTAA	2 cut(s)	119, 266
Tru9I	TTAA	2 cut(s)	119, 266
TseI	GCWGC	1 cut(s)	408
TspDTI	ATGAA	3 cut(s)	270, 274, 501
Van91I	CCANNNNNTGG	1 cut(s)	180
XapI	RAATTY	2 cut(s)	217, 477
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.